Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h08
         (597 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ970247-1|CAI96719.1|  132|Anopheles gambiae putative reverse t...    26   1.1  
AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse t...    26   1.1  
AJ970248-1|CAI96720.1|  132|Anopheles gambiae putative reverse t...    25   1.4  
AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.            25   1.9  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    23   5.7  
AJ821850-1|CAH25390.1|  426|Anopheles gambiae alpha-2,6-sialyltr...    23   9.9  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   9.9  

>AJ970247-1|CAI96719.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 123 PMAFIRNYLNCTFDLLDDAVLMNYFNYLQSMQLKHLVG-STSTNIFKFVKPQFRFVCNRT 299
           P+A I   L     L+ + +L +  NY+   Q   +   ST+TN+ +FV    + +  R 
Sbjct: 7   PLAAIAKVLEL---LVYEPLLASARNYISPNQHGFVPNRSTTTNLMQFVSSCHKSIDARL 63

Query: 300 TVDILEFDTRMYIKPGTHV 356
            VD++  D +      +HV
Sbjct: 64  QVDVIYTDLKAAFDRISHV 82


>AJ970246-1|CAI96718.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 123 PMAFIRNYLNCTFDLLDDAVLMNYFNYLQSMQLKHLVG-STSTNIFKFVKPQFRFVCNRT 299
           P+A I   L     L+ + +L +  NY+   Q   +   ST+TN+ +FV    + +  R 
Sbjct: 7   PLAAIAKVLEL---LVYEPLLASARNYISPNQHGFVPNRSTTTNLMQFVSSCHKSIDARL 63

Query: 300 TVDILEFDTRMYIKPGTHV 356
            VD++  D +      +HV
Sbjct: 64  QVDVIYTDLKAAFDRISHV 82


>AJ970248-1|CAI96720.1|  132|Anopheles gambiae putative reverse
           transcriptase protein.
          Length = 132

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = +3

Query: 165 LLDDAVLMNYFNYLQSMQLKHLVG-STSTNIFKFVKPQFRFVCNRTTVDILEFDTRMYIK 341
           L+ + +L +  NY+   Q   +   ST+TN+ +FV    + +  R  VD++  D +    
Sbjct: 18  LVYEPLLASARNYISPNQHGFVPNRSTTTNLMQFVSSCHKSIDARLQVDVIYTDLKAAFD 77

Query: 342 PGTHV 356
             +HV
Sbjct: 78  RISHV 82


>AY753541-1|AAV28544.1| 3398|Anopheles gambiae SGS4 protein.
          Length = 3398

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 19/86 (22%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
 Frame = +3

Query: 204  LQSMQLKHLVGSTSTNIFKFVKPQFRF--------VCNRTTVDILEFDTRMYIKPGTHVY 359
            L+ + + H      T + K + P+F          +C+ +++D+     +   + G+   
Sbjct: 814  LRVLTINHKGNLNDTEVQKSLPPKFLIHTFGNGFLMCSASSIDVWTMGIKNEWQKGSTQA 873

Query: 360  ATNLFTSNPRKMMAF-LYAEFGKVFK 434
             TN+FT   + + AF L AEF    +
Sbjct: 874  PTNIFTDIDKLLNAFVLDAEFSTALR 899


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -1

Query: 153 NSNSCE*MPSALKEHVHYLLNQNSWSKINI*NDLFPESTS 34
           N   CE   SALK+   Y L    W   N   D +PE T+
Sbjct: 436 NLRDCE---SALKQIDVYTLALVLWELANRCEDFYPEGTT 472


>AJ821850-1|CAH25390.1|  426|Anopheles gambiae
           alpha-2,6-sialyltransferase protein.
          Length = 426

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 402 FLYAEFGKVFKNK-IFVNINNYGCVLAGSAGFL 497
           F + E G       +F ++ N  CV+  SAG L
Sbjct: 180 FTWNEIGSYLPTSPLFGDVTNGSCVIVASAGSL 212


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 22.6 bits (46), Expect = 9.9
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
 Frame = +2

Query: 200 LLAKHAVETFGGQHVDKHFQVC--KATISICVQSHNC 304
           LL     +T  GQ  +     C  K T S C+Q+ NC
Sbjct: 15  LLVALVADTTLGQLSNYQLTTCPGKTTCSQCIQTTNC 51


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 675,248
Number of Sequences: 2352
Number of extensions: 15472
Number of successful extensions: 30
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57609459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)