Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h08
         (597 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061131-1|AAL28679.1|  358|Drosophila melanogaster LD11455p pro...    32   0.68 
AE013599-2837|AAF57594.1|  358|Drosophila melanogaster CG7137-PA...    32   0.68 
AY118353-1|AAM48382.1|  488|Drosophila melanogaster RE01052p pro...    29   3.6  
BT004872-1|AAO45228.1|  709|Drosophila melanogaster LD24482p pro...    28   8.4  
AE014134-1744|AAF52841.1|  709|Drosophila melanogaster CG5838-PA...    28   8.4  
AB019510-1|BAA34362.1|  709|Drosophila melanogaster DREF transcr...    28   8.4  
AB010823-1|BAA24827.1|  709|Drosophila melanogaster DREF protein.      28   8.4  

>AY061131-1|AAL28679.1|  358|Drosophila melanogaster LD11455p
           protein.
          Length = 358

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 132 FIRNYLNCTFDLLDDAVLMNYFNYLQSMQLKHLVGSTSTNIFKFVKP 272
           F+R    C FDL    V +NYF + Q  +++H+  +T    F  +KP
Sbjct: 307 FVRCLNACGFDLNKKDVAVNYFYFFQFKKMRHVPKNTKMKAFS-LKP 352


>AE013599-2837|AAF57594.1|  358|Drosophila melanogaster CG7137-PA
           protein.
          Length = 358

 Score = 31.9 bits (69), Expect = 0.68
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 132 FIRNYLNCTFDLLDDAVLMNYFNYLQSMQLKHLVGSTSTNIFKFVKP 272
           F+R    C FDL    V +NYF + Q  +++H+  +T    F  +KP
Sbjct: 307 FVRCLNACGFDLNKKDVAVNYFYFFQFKKMRHVPKNTKMKAFS-LKP 352


>AY118353-1|AAM48382.1|  488|Drosophila melanogaster RE01052p
           protein.
          Length = 488

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -3

Query: 595 SPSRYNRNGCMLLSNRGAAHIRTPFQSTYASSNKK---PALPANT 470
           S +RY+ N CMLL +R    I  PF     S + K   P LP+ T
Sbjct: 436 SSNRYSSNRCMLLLHRQPLAILVPFPMAMISLSPKMPRPPLPSCT 480


>BT004872-1|AAO45228.1|  709|Drosophila melanogaster LD24482p
           protein.
          Length = 709

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 171 DDAVLMNYFNYLQSMQLKHLVGSTSTNIFKFVKPQFRFVCNRTTVDILEFDTRMYIKPGT 350
           DD ++MN    + S+   H++ + +      + P+F      TT+D LE   RM     T
Sbjct: 508 DDPLMMNLKRTISSVLQAHVISNDNLTAAALLDPRFH---RLTTIDNLERTVRML----T 560

Query: 351 HVYATN 368
           H Y  N
Sbjct: 561 HKYNIN 566


>AE014134-1744|AAF52841.1|  709|Drosophila melanogaster CG5838-PA
           protein.
          Length = 709

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 171 DDAVLMNYFNYLQSMQLKHLVGSTSTNIFKFVKPQFRFVCNRTTVDILEFDTRMYIKPGT 350
           DD ++MN    + S+   H++ + +      + P+F      TT+D LE   RM     T
Sbjct: 508 DDPLMMNLKRTISSVLQAHVISNDNLTAAALLDPRFH---RLTTIDNLERTVRML----T 560

Query: 351 HVYATN 368
           H Y  N
Sbjct: 561 HKYNIN 566


>AB019510-1|BAA34362.1|  709|Drosophila melanogaster DREF
           transcription factor protein.
          Length = 709

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 171 DDAVLMNYFNYLQSMQLKHLVGSTSTNIFKFVKPQFRFVCNRTTVDILEFDTRMYIKPGT 350
           DD ++MN    + S+   H++ + +      + P+F      TT+D LE   RM     T
Sbjct: 508 DDPLMMNLKRTISSVLQAHVISNDNLTAAALLDPRFH---RLTTIDNLERTVRML----T 560

Query: 351 HVYATN 368
           H Y  N
Sbjct: 561 HKYNIN 566


>AB010823-1|BAA24827.1|  709|Drosophila melanogaster DREF protein.
          Length = 709

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 19/66 (28%), Positives = 30/66 (45%)
 Frame = +3

Query: 171 DDAVLMNYFNYLQSMQLKHLVGSTSTNIFKFVKPQFRFVCNRTTVDILEFDTRMYIKPGT 350
           DD ++MN    + S+   H++ + +      + P+F      TT+D LE   RM     T
Sbjct: 508 DDPLMMNLKRTISSVLQAHVISNDNLTAAALLDPRFH---RLTTIDNLERTVRML----T 560

Query: 351 HVYATN 368
           H Y  N
Sbjct: 561 HKYNIN 566


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,571,951
Number of Sequences: 53049
Number of extensions: 611245
Number of successful extensions: 1449
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1449
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2420893683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)