Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28h03
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC31F10.06c |sar1||ADP-ribosylation factor Sar1|Schizosaccharo... 244 9e-66
SPAC22F3.05c |alp41||ADP-ribosylation factor Alp41|Schizosacchar... 102 4e-23
SPBC1539.08 |||ADP-ribosylation factor, Arf family|Schizosacchar... 101 1e-22
SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomy... 97 3e-21
SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit... 40 3e-04
SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr 2||... 35 0.013
SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces ... 33 0.029
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 32 0.089
SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces p... 31 0.16
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase... 29 0.63
SPAC23H4.07c |srp102||signal recognition particle receptor beta ... 29 0.83
SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyce... 29 0.83
SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces... 27 1.9
SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit Caf16|Schizos... 27 2.5
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 27 3.3
SPCC11E10.04 |||mitochondrial ATPase expression protein homolog|... 26 4.4
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 4.4
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr... 26 4.4
SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr... 26 5.8
SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130 |S... 26 5.8
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 5.8
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ... 26 5.8
>SPBC31F10.06c |sar1||ADP-ribosylation factor
Sar1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 190
Score = 244 bits (597), Expect = 9e-66
Identities = 123/175 (70%), Positives = 140/175 (80%), Gaps = 1/175 (0%)
Frame = +3
Query: 162 MFILDWFTGVLGFLGLWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELS 341
MFI++WF L LGL K K+LFLGLDNAGKTTLLHMLK+DRLA PTLHPTSEEL+
Sbjct: 1 MFIINWFYDALAMLGLVNKHAKMLFLGLDNAGKTTLLHMLKNDRLAVMQPTLHPTSEELA 60
Query: 342 IGSMRFTTFDLGGHQQARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLS 521
IG++RFTTFDLGGHQQARR+WRDYFP V+ IV+LVD CD RL ESKAELD+LL E L+
Sbjct: 61 IGNVRFTTFDLGGHQQARRLWRDYFPEVNGIVYLVDCCDFERLSESKAELDALLAMEELA 120
Query: 522 NCPVLILGNKIDKPGAASEDELRHFFNLYQQTTGKGKVSRSELPG-RPLELFMCS 683
P LILGNKID PGA SEDEL+ LY QTTGKG VS+ +PG RP+E+FMCS
Sbjct: 121 RVPFLILGNKIDAPGAISEDELKAALGLY-QTTGKG-VSK-PVPGIRPIEVFMCS 172
>SPAC22F3.05c |alp41||ADP-ribosylation factor
Alp41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 186
Score = 102 bits (245), Expect = 4e-23
Identities = 54/151 (35%), Positives = 87/151 (57%), Gaps = 1/151 (0%)
Frame = +3
Query: 207 LWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQ 386
L ++ ++L LGLDNAGKTT+L L ++ + + PT L + +RFT +D+GG +
Sbjct: 12 LKEREVRVLLLGLDNAGKTTILKCLLNEDVNEVSPTFGFQIRTLEVEGLRFTIWDIGGQK 71
Query: 387 QARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLSNCPVLILGNKIDKPG 566
R W++YF + +AI+++VD+ D RL E + L LL +E L +L+L NK D G
Sbjct: 72 TLRNFWKNYFESTEAIIWVVDSLDDLRLEECRNTLQELLVEEKLLFTSILVLANKSDVSG 131
Query: 567 AASEDELRHFFNLYQQTTGKGKV-SRSELPG 656
A S +E+ N+ + + ++ S S L G
Sbjct: 132 ALSSEEISKILNISKYKSSHWRIFSVSALTG 162
>SPBC1539.08 |||ADP-ribosylation factor, Arf
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 184
Score = 101 bits (242), Expect = 1e-22
Identities = 46/130 (35%), Positives = 79/130 (60%)
Frame = +3
Query: 216 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQAR 395
K ++L LGLD AGKTT+L+ LK ++ +PT+ E ++ +++F +D+GG + R
Sbjct: 20 KEMRILMLGLDAAGKTTILYKLKLNQSVVTIPTVGFNVETVTYKNIKFNVWDVGGQDKIR 79
Query: 396 RVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLSNCPVLILGNKIDKPGAAS 575
+WR YF ++F+VD+ D R+ E++ EL +++D + +C +L+L NK D PGA S
Sbjct: 80 PLWRHYFTGTKGLIFVVDSADSNRISEARQELHRIISDREMRDCLLLVLANKQDLPGALS 139
Query: 576 EDELRHFFNL 605
++ L
Sbjct: 140 PAQITDVLQL 149
>SPBC4F6.18c |arf1||ADP-ribosylation factor Arf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 180
Score = 96.7 bits (230), Expect = 3e-21
Identities = 46/132 (34%), Positives = 76/132 (57%)
Frame = +3
Query: 213 KKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQA 392
K+ ++L +GLD AGKTT+L+ LK + +PT+ E + ++ FT +D+GG +
Sbjct: 15 KREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKI 74
Query: 393 RRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLSNCPVLILGNKIDKPGAA 572
R +WR YF I+F+VD+ DR R+ E+ EL +L ++ L + +L+ NK D P A
Sbjct: 75 RPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAM 134
Query: 573 SEDELRHFFNLY 608
+ E+ L+
Sbjct: 135 NAAEITDKLGLH 146
>SPAC23H3.13c |gpa2|git8|heterotrimeric G protein alpha-2 subunit
Gpa2 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 354
Score = 39.9 bits (89), Expect = 3e-04
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 14/131 (10%)
Frame = +3
Query: 285 DDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVWRDYFPAVDAIVFLVD----- 449
DD L TL + ++ ++ FD+GG + RR W F V++I+F V
Sbjct: 170 DDILRSRNSTLGISEISFTLDHLQIRMFDVGGQRTERRKWIYCFENVNSIIFCVSLNDYD 229
Query: 450 -------ACDRPRLPESKAELDSLLTDETLSNCPVLILGNKIDKPGAASEDELRH--FFN 602
A +R RL ES + DS++ + + +++ NK D +L H F +
Sbjct: 230 KKLYERAAPERNRLVESISLFDSIINSQWFMHSSIILFLNKFD----LFRKKLEHVPFQD 285
Query: 603 LYQQTTGKGKV 635
+ Q GK V
Sbjct: 286 YFPQYEGKNSV 296
>SPBC1703.10 |ypt1||GTPase Ypt1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 203
Score = 34.7 bits (76), Expect = 0.013
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
Frame = +3
Query: 225 KLLFLGLDNAGKTTLLHMLKDDRLAQ-HVPTLHPTSE----ELSIGSMRFTTFDLGGHQQ 389
KLL +G GK+ LL DD + ++ T+ + EL +++ +D G ++
Sbjct: 10 KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQER 69
Query: 390 ARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLSNCPVLILGNKID 557
R + Y+ I+ + D D+ K L + + L++GNK D
Sbjct: 70 FRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQE-IDRYAVEGVNRLLVGNKSD 124
>SPBC24C6.06 |gpa1||G-protein alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 33.5 bits (73), Expect = 0.029
Identities = 26/100 (26%), Positives = 42/100 (42%), Gaps = 10/100 (10%)
Frame = +3
Query: 288 DRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQARRVWRDYFPAVDAIVFLV-----DA 452
D L + T + E + + FD+GG + RR W F V A++FLV D
Sbjct: 213 DILHCRIKTTGISEETFLLNRHHYRFFDVGGQRSERRKWIHCFENVTALLFLVSLAGYDQ 272
Query: 453 C-----DRPRLPESKAELDSLLTDETLSNCPVLILGNKID 557
C ++ E+ DS+ S +++ NK+D
Sbjct: 273 CLVEDNSGNQMQEALLLWDSICNSSWFSESAMILFLNKLD 312
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 31.9 bits (69), Expect = 0.089
Identities = 26/116 (22%), Positives = 47/116 (40%), Gaps = 5/116 (4%)
Frame = +3
Query: 225 KLLFLGLDNAGKTTLLHM-LKDDRLAQHVPTL----HPTSEELSIGSMRFTTFDLGGHQQ 389
KL+ +G GKTT + L + +++ TL HP + G + F +D G ++
Sbjct: 11 KLVLVGDGGTGKTTFVKRHLTGEFEKKYIATLGVEVHPLHFHTNFGEICFNVWDTAGQEK 70
Query: 390 ARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLSNCPVLILGNKID 557
+ Y+ + + D R L+ N P+++ GNK+D
Sbjct: 71 LGGLRDGYYIQGQCGIIMFDVTSRITYKNVPHWWRDLV--RVCENIPIVLCGNKVD 124
>SPAC20H4.11c |rho5||Rho family GTPase Rho5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 200
Score = 31.1 bits (67), Expect = 0.16
Identities = 32/118 (27%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Frame = +3
Query: 225 KLLFLGLDNAGKTTLLHMLKDDRLAQ-HVPTL---HPTSEELSIGSMRFTTFDLGGHQQA 392
KL+ +G GKT LL + + +VPT+ + E+ + +D G +
Sbjct: 8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTVFENYVADVEVDGRHIELALWDTAGQEDY 67
Query: 393 RRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETL---SNCPVLILGNKID 557
R+ +P D+ V L+ C PES + E L SN P+L++G K+D
Sbjct: 68 DRLRPLSYP--DSHVVLI--CFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVD 121
>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1448
Score = 29.1 bits (62), Expect = 0.63
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 79 ILQISAKTRDTLPLGLVINIVQFNYIQKCLSSTGSLECWDFLVYGKSRASSCFW 240
IL+ ++ TR+ L + ++ I++ L + GSL D L+ G S A FW
Sbjct: 633 ILRDASLTRNPLVYPSAKSSIKSIDIKRVLENVGSLNHEDILLIGSSNAKYSFW 686
>SPAC23H4.07c |srp102||signal recognition particle receptor beta
subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 227
Score = 28.7 bits (61), Expect = 0.83
Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Frame = +3
Query: 213 KKSGKLLFLGLDNAGKTTLLHMLKDDRLAQHVPTLHPTSEELSIGSMRFTTFDLGGHQQA 392
KK + +G ++GKT+L L VP++ P G+ DL GH +A
Sbjct: 35 KKLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKYGAW---LVDLPGHPRA 91
Query: 393 RRVWRDYFPA---VDAIVFLVDA 452
+R F V A+VF++++
Sbjct: 92 KRWITTKFSGNYNVKAVVFVLNS 114
>SPBC1271.12 |kes1||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 388
Score = 28.7 bits (61), Expect = 0.83
Identities = 11/38 (28%), Positives = 24/38 (63%)
Frame = +3
Query: 378 GHQQARRVWRDYFPAVDAIVFLVDACDRPRLPESKAEL 491
G ++RRVW+++ A+DA + + ++ ++ E + EL
Sbjct: 306 GEYESRRVWKNFAVALDAGDYAAASQEKSKIEEGQREL 343
>SPCC70.07c |tmp1|tmp|thymidylate kinase Tmp1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 27.5 bits (58), Expect = 1.9
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Frame = +3
Query: 222 GKLLFL-GLDNAGKTTLLHMLKDDRLAQH 305
G+L+ + GLD +GK+T +L D ++QH
Sbjct: 7 GRLIVIEGLDRSGKSTQCQLLVDKLISQH 35
>SPAC20G4.01 ||SPAC22F8.13|CCR4-Not complex subunit
Caf16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +3
Query: 216 KSGKLLFLGLDNAGKTTLLHMLKDDRLAQ 302
K + L +G + AGK+TLL +L LA+
Sbjct: 29 KGSRTLLVGANGAGKSTLLKLLSGKSLAK 57
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.6 bits (56), Expect = 3.3
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = -2
Query: 346 PIDSSSDVGCKVGTC*ASLSSFNICKSVVFPALSSPRNKSLPDFFHRPRNP 194
P SD G T +SLS+FN C S+ F + +S S H PRNP
Sbjct: 436 PSTPLSDNGPTYSTPHSSLSNFNTCDSLSFSSNNSLYGYS--TLLH-PRNP 483
>SPCC11E10.04 |||mitochondrial ATPase expression protein
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 443
Score = 26.2 bits (55), Expect = 4.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +1
Query: 82 LQISAKTRDTLPLGLVINIVQFNYIQKCLSSTGSLECWDFLV 207
LQI +D LG+ NIV + +I + TG+ +++V
Sbjct: 113 LQIKLILQDADRLGIQFNIVDYTHILRVAMYTGNKHILEYIV 154
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 4.4
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -2
Query: 271 KSVVFPALSSPRNKSLPDFFHRPRNPNTPVN 179
+S +PAL++P S+ D + P P +P+N
Sbjct: 256 QSTYWPALAAPVYPSMKDVPNNPFTPFSPIN 286
>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
1|||Manual
Length = 208
Score = 26.2 bits (55), Expect = 4.4
Identities = 22/119 (18%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Frame = +3
Query: 225 KLLFLGLDNAGKTTLLHMLKDDRLA-QHVPTLHPT--SEELSIGSMRFTT--FDLGGHQQ 389
K++ LG GKT L++ + + + ++ T+ ++++ + T +D G ++
Sbjct: 10 KVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVTLQLWDTAGQER 69
Query: 390 ARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLSNC--PVLILGNKIDK 560
+ + ++ D V + + + + L + C P +I+GN+IDK
Sbjct: 70 FQSLGMAFYRGADCCVIVYNVNNSKSFDSVENWRQEFLYQTSQDECAFPFIIVGNQIDK 128
>SPAC4C5.02c |ryh1|hos1|GTPase Ryh1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 201
Score = 25.8 bits (54), Expect = 5.8
Identities = 24/116 (20%), Positives = 52/116 (44%), Gaps = 5/116 (4%)
Frame = +3
Query: 225 KLLFLGLDNAGKTTLL-HMLKD--DRLAQHVPTLHPTSEELSI--GSMRFTTFDLGGHQQ 389
KL+FLG + GKT+L+ + D D Q + S+ + + ++R +D G ++
Sbjct: 13 KLVFLGEQSVGKTSLITRFMYDQFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER 72
Query: 390 ARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLSNCPVLILGNKID 557
R + Y + + D + ++ ++ + E + ++++GNK D
Sbjct: 73 FRSLIPSYIRDSSVAIIVYDITNHNSFVNTEKWIEDVRA-ERGDDVIIVLVGNKTD 127
>SPAPJ698.03c |prp12|sap130|U2 snRNP-associated protein Sap130
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1206
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/29 (31%), Positives = 20/29 (68%)
Frame = +1
Query: 70 QRNILQISAKTRDTLPLGLVINIVQFNYI 156
Q N++++ K DT+PL + +NI++ ++
Sbjct: 338 QGNVVELRLKYFDTVPLAVQLNILKTGFL 366
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 480 KAELDSLLTDETLSNCPVLILGNKIDKPGAASEDEL 587
K E+D + ET S+ +L I K G+A +DEL
Sbjct: 556 KMEVDYTSSSETESDASILSPSAAIPKSGSAIKDEL 591
>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 2|||Manual
Length = 827
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 253 ALSSPRNKSLPDFFHRPRNPNTPVNQS 173
A S N LP F P + ++PVNQS
Sbjct: 73 AEESDPNLKLPSFLAPPNDKDSPVNQS 99
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,691,771
Number of Sequences: 5004
Number of extensions: 53214
Number of successful extensions: 187
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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