Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28h03
         (683 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    27   0.22 
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    24   1.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    24   1.2  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    24   1.6  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    22   4.7  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 26.6 bits (56), Expect = 0.22
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
 Frame = +3

Query: 207 LWKKSGKLLFLGLDNAGKTTLLHMLKDDRLAQH-----VPTLHPTSEELSIGSMRFTTFD 371
           L K+   +  +G  + GKTTLL  L++  +A+         +      L  G  R T  D
Sbjct: 141 LIKRHPIVTIMGHVDHGKTTLLDALRNTSIAKSEFGGITQCIGAFDVTLESGE-RVTFLD 199

Query: 372 LGGHQQARRVWRDYFPAVDAIVFLVDACDRPRLPESKAELDSLLTDETLSNCPVLILGNK 551
             GH     +        D +V +V A D  +  E   +   +  D   +  P+++  NK
Sbjct: 200 TPGHAAFISMRHRGAHITDIVVLVVAADDGVK--EQTLQSIEMAKD---AKVPIIVAINK 254

Query: 552 IDKP 563
           IDKP
Sbjct: 255 IDKP 258


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 447  DACDRPRLPESKAELDSL 500
            D  DRP L E++ ++DSL
Sbjct: 1877 DRSDRPELSEAECDIDSL 1894


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 447  DACDRPRLPESKAELDSL 500
            D  DRP L E++ ++DSL
Sbjct: 1873 DRSDRPELSEAECDIDSL 1890


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +1

Query: 559 NPVLPVKTNYVTFSICIS 612
           NP +   TNY  FS+ IS
Sbjct: 68  NPAMQTATNYYLFSLAIS 85


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 5/23 (21%), Positives = 17/23 (73%)
 Frame = -2

Query: 91  LFVICYVVKWIISLANDYCDETV 23
           +F+IC++  ++++L + +C + +
Sbjct: 343 VFIICWLPFFVVNLWSGFCSQCI 365


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -2

Query: 91  LFVICYVVKWIISLANDYCDETVN 20
           +F+IC+V  + +++   YC   ++
Sbjct: 280 VFLICWVPFFCVNIVTSYCKTCIS 303


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,758
Number of Sequences: 438
Number of extensions: 3862
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)