Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28g21
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...   170   1e-43
SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces po...    37   0.003
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    30   0.36 
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    28   1.1  
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar...    26   4.5  
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    26   5.9  
SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomy...    25   7.9  
SPBC1718.05 |trs31||TRAPP complex subunit Trs31 |Schizosaccharom...    25   7.9  
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    25   7.9  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    25   7.9  

>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score =  170 bits (414), Expect = 1e-43
 Identities = 78/175 (44%), Positives = 110/175 (62%), Gaps = 1/175 (0%)
 Frame = +2

Query: 155 TLPEIFKYVDQNKDSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWMQDKLKEVGATTELR 334
           +L ++++ +D+ KD +   L  AV+IPSVS DV  R   + M  ++  +  ++GA  E R
Sbjct: 2   SLDKLYEVIDKKKDEFVTRLSRAVSIPSVSADVTLRPKVVEMADFVVSEFTKLGAKMEKR 61

Query: 335 DVGFQTIDGKDVQXXXXXXXXXXNDPKKNTVCIYGHLDVQPALKSDGWETEPFEL-VERN 511
           D+G+  +DG+DV           NDP K TV IY H DVQPA   DGW T+PF L V+  
Sbjct: 62  DIGYHQMDGQDVPLPPIVLGQYGNDPSKKTVLIYNHFDVQPASLEDGWSTDPFTLTVDNK 121

Query: 512 EKLYGRGSTDDKGPVLGWLHTINAYKGTGAELPVNLKFIFECMEESGSEGLDSLL 676
            +++GRG+TDDKGP++GW+  I A+K  G + PVNL   FE MEE GSEGL+ L+
Sbjct: 122 GRMFGRGATDDKGPLIGWISAIEAHKELGIDFPVNLLMCFEGMEEYGSEGLEDLI 176


>SPAC24C9.08 |||vacuolar carboxypeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 596

 Score = 36.7 bits (81), Expect = 0.003
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +2

Query: 431 IYGHLDVQPALKS--DGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHTI 577
           + GH DV P  ++  D W   PF     N  +Y RG+ DDK  V+  L  +
Sbjct: 194 LMGHQDVVPVNQASLDRWYFPPFSATYHNGHVYSRGAADDKNSVVAILEAL 244


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 31/120 (25%), Positives = 50/120 (41%), Gaps = 3/120 (2%)
 Frame = -1

Query: 567 SQPSTGPLSSVEPRPYNFSLRSTSSKGSVSHPSDFKAGCTSK*P*IQTVFFFGSLPNTPT 388
           S  ST   SS+       +  S+SS  S    S   +  +S       +    S  ++PT
Sbjct: 225 SSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPT 284

Query: 387 KTGGS*TSLPSIV*KPTSLNSVVAPTSFNLSCIQ*TI---RMQSARYFTSHETDGMATAS 217
            T  + +S  S    PTS +S ++ +S + S    T+    M S+  F+S  T   +T S
Sbjct: 285 STSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSSSTIS 344


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1136

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 22/93 (23%), Positives = 40/93 (43%), Gaps = 1/93 (1%)
 Frame = +2

Query: 17   INRATCIFNTLIKLPATKQLVPFFPAYHQHYSVSSKQVSAKMATE-KTLPEIFKYVDQNK 193
            ++   C  NT+  L +    + FF A +     S  Q+S   AT   +L  IF   D   
Sbjct: 750  VDSTNCNLNTMEALASVNTALQFFSALNYSECFSESQISPLHATVISSLSAIFIRDDTEN 809

Query: 194  DSYKQLLKEAVAIPSVSCDVKYRADCIRMVHWM 292
            D   +L+++           +Y A C++++ W+
Sbjct: 810  DLVTELVEKLFLFK------QYNA-CMQLIGWL 835


>SPBC19C7.08c |||leucine carboxyl
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 681

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 458 QVVHPNDHRYKLYFFLDHYPIR 393
           ++V P D   + YFFL HY I+
Sbjct: 295 EMVEPFDEWEEFYFFLQHYSIQ 316


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
 Frame = +2

Query: 548 GPVLGWL-HTINAYKGTGAELPVNLKFIFECMEES 649
           GP L ++  TIN Y+GTG  L  +LK + +  E+S
Sbjct: 401 GPYLVFMASTINGYEGTGRSL--SLKLLQQLREQS 433


>SPCC18.18c |fum1|SPCC290.01c|fumarate hydratase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -2

Query: 464 SKQVVHPNDHRYKLYFFLDHYPIRLLKLAAVERL-CHLLFESQH 336
           SK+ VHPNDH        D +P  ++ +A+V ++  HLL   +H
Sbjct: 141 SKKPVHPNDHVNMSQSSNDTFP-TVMHIASVLQIHTHLLPAMKH 183


>SPBC1718.05 |trs31||TRAPP complex subunit Trs31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 533 NLVHIIFHCAQLVQKVQSPIHQISKQVVHPNDHRYKL 423
           NL    F  ++L+Q++QS +  I +     N+H Y++
Sbjct: 42  NLSSFAFIFSELIQRIQSQVSGIQEFEEKLNEHGYRV 78


>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 503 QLVQKVQSPIHQISKQVVHPNDHRYKLYFFLDHYPIRLLKLAA 375
           ++VQK  S +H+++K++     H  +L  F   Y + LL++ A
Sbjct: 538 EIVQKSLSVLHKVTKKIDKKAQHLQQLNAFQLLYSLVLLQVYA 580


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +2

Query: 410 PKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKL 520
           P    + I    DV+P LKS   +  P E   R EKL
Sbjct: 311 PLLEFIAIMDIKDVRPVLKSYQGKNIPLEYARREEKL 347


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,339
Number of Sequences: 5004
Number of extensions: 62877
Number of successful extensions: 195
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)