Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28g21
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0374 + 28381456-28381785,28382302-28382555,28382665-283827...    36   0.023
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016           31   0.87 
06_03_0054 - 16038103-16038251,16038256-16038619                       29   2.6  
01_01_0050 - 382451-382864,382950-383020,383131-383176,383302-38...    29   4.6  
03_02_0310 + 7315185-7316820,7318332-7318879                           28   6.1  
09_06_0257 + 21891523-21891578,21891911-21892421,21893021-218930...    28   8.1  
04_04_1261 - 32186769-32186909,32188493-32188612,32188742-32189065     28   8.1  

>02_05_0374 +
           28381456-28381785,28382302-28382555,28382665-28382773,
           28383272-28383410,28383525-28383582,28384179-28384196,
           28384301-28384423,28384483-28384681,28384763-28384796,
           28385044-28385153
          Length = 457

 Score = 36.3 bits (80), Expect = 0.023
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = +2

Query: 440 HLDVQPALKSDGWETEPFELV---ERNEKLYGRGSTDDKGPV 556
           H+DV PA   D W+ +PF L    E  +KL GRG+TD  G V
Sbjct: 99  HMDVVPA-NPDEWDFDPFSLTFDSEDKDKLRGRGTTDCLGHV 139


>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
          Length = 441

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
 Frame = +2

Query: 407 DPKKNTVCIYGHLDVQPALKSDGWETEPFELVE--RNEKLYGRGSTDDKGPVLGWLHTIN 580
           DP   ++ +  HLD  PA + + W   PF         ++Y RG+ DDK   + +L  I 
Sbjct: 99  DPSLPSLLLNSHLDSVPA-EPEQWLHPPFAAHRDAATGRVYARGAQDDKCLPIQYLEAIR 157

Query: 581 AYKGTG 598
             +  G
Sbjct: 158 GLRDAG 163


>06_03_0054 - 16038103-16038251,16038256-16038619
          Length = 170

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 203 KQLLKEAVAIPSVSCDVKYRADCIRMV-HWMQDKLKEVGATTELRDVGFQTID 358
           K +L     +P+    VK   +C   + HW+Q+K K+ G  T    +G Q  D
Sbjct: 11  KDILDNKRPLPTTKV-VKLTEECSNAILHWLQEKKKDPGCPTITCSIGRQHFD 62


>01_01_0050 -
           382451-382864,382950-383020,383131-383176,383302-383333,
           383409-383558,383666-383849,383934-384109,384580-384628,
           384724-384923,385515-385548
          Length = 451

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 18/78 (23%), Positives = 31/78 (39%), Gaps = 3/78 (3%)
 Frame = +2

Query: 407 DPKKNTVCIYGHLDVQPALKSDGWETEPFELVERNEKLYGRGSTDDKGPVLGWLHT---I 577
           DP+ N+  +      Q  + +     +P+E V+  + +          P L W  T   +
Sbjct: 79  DPQPNSTDVAAVASQQAGIANQSAGVQPYETVQAPQAINTGPIVPHAQPQLSWSRTLIGV 138

Query: 578 NAYKGTGAELPVNLKFIF 631
             + G GA   V LK +F
Sbjct: 139 GVFLGVGASAAVILKKLF 156


>03_02_0310 + 7315185-7316820,7318332-7318879
          Length = 727

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +1

Query: 550 TCTWLAAHHQCL*GHWC*AACQFE 621
           TCTW+     C  GHWC  AC  E
Sbjct: 421 TCTWVGCD-VC--GHWCHVACALE 441


>09_06_0257 +
           21891523-21891578,21891911-21892421,21893021-21893092,
           21893571-21893875,21894085-21894196,21894514-21894750,
           21894933-21895640
          Length = 666

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/25 (52%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = -1

Query: 543 SSVEPRPYNFSLRSTS-SKGSVSHP 472
           SS  P P+N+ + ST+ SKG+VS P
Sbjct: 274 SSANPPPFNYGMFSTALSKGAVSAP 298


>04_04_1261 - 32186769-32186909,32188493-32188612,32188742-32189065
          Length = 194

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 17/66 (25%), Positives = 29/66 (43%)
 Frame = -3

Query: 463 QSRLYIQMTIDTNCIFFWIITQYAY*NWRQLNVFAIYCLKANIP*LCSSSDFLQFVLHPV 284
           Q+R +   +      F W+ T+Y   NW+ L +     L A +    SS D      H +
Sbjct: 80  QARTHTHFSAKRASAFSWLFTKYFVANWQLLPLQPFLALAATVAAAASSID------HTL 133

Query: 283 NHTDAI 266
           N ++A+
Sbjct: 134 NSSNAV 139


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,564,257
Number of Sequences: 37544
Number of extensions: 381303
Number of successful extensions: 900
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)