Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28g18
         (479 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0598 - 25391923-25393197                                         30   0.85 
09_06_0002 + 20121846-20123308,20123420-20123426                       28   4.5  
03_05_0776 + 27625122-27625415,27627226-27627273,27627455-276275...    27   7.9  

>11_06_0598 - 25391923-25393197
          Length = 424

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 15/30 (50%), Positives = 21/30 (70%)
 Frame = +3

Query: 312 MTLRERGVTKPPKKSEKLQQYKKAIAAEQT 401
           ++LR +GVT+ PKK EKL QY + +   QT
Sbjct: 95  LSLRNKGVTQLPKKIEKL-QYLETLDIRQT 123


>09_06_0002 + 20121846-20123308,20123420-20123426
          Length = 489

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 176 LTKPTDKNWTSCTLWLTISKIYSRE 250
           L  P+  + T+C+LW+T S I+ +E
Sbjct: 238 LAHPSPSSSTNCSLWMTKSAIFPKE 262


>03_05_0776 +
           27625122-27625415,27627226-27627273,27627455-27627514,
           27627633-27627802,27627901-27627973,27628096-27628161,
           27628262-27628345,27628681-27628758,27629009-27629092,
           27629835-27630137,27630227-27630397,27630971-27631161,
           27631284-27631686,27632246-27632497,27632577-27633077,
           27633181-27633278,27633400-27633499,27633722-27633867,
           27633973-27634138
          Length = 1095

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 255 DNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAE 395
           D K    ++   K     A  L+ +  +  PKKSEK +Q KKA+  E
Sbjct: 112 DQKAKEKEEKRLKAKAKEAARLQAQAASDGPKKSEK-KQRKKAVEDE 157


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,402,903
Number of Sequences: 37544
Number of extensions: 198440
Number of successful extensions: 658
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)