Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28g18
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical p...    31   0.43 
AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical...    31   0.57 
AC024201-3|AAK93866.1|  238|Caenorhabditis elegans Dnaj domain (...    29   1.3  
Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical pr...    29   2.3  
L25598-1|AAA27942.1|  129|Caenorhabditis elegans Hypothetical pr...    29   2.3  
Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical pr...    27   5.3  
Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical pr...    27   5.3  
U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.        27   5.3  
AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine r...    27   5.3  
AL034488-13|CAA22460.2|  345|Caenorhabditis elegans Hypothetical...    27   7.0  
U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical ...    27   9.3  
AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z81058-11|CAH60760.1|  201|Caenorhabditis elegans Hypothetical
           protein F11E6.11 protein.
          Length = 201

 Score = 31.1 bits (67), Expect = 0.43
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 364 NFSDFFGGFVTPRSRNVMAWPPLFFVGVLSDMLILLSTFP*VYF 233
           +FS FF G + P    ++ WP      VLS +++LLS F  +Y+
Sbjct: 144 SFSVFFNGSIMPDCSYLVIWPTF----VLSFLILLLSIFVIIYY 183


>AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.1 protein.
          Length = 421

 Score = 30.7 bits (66), Expect = 0.57
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = +2

Query: 383 YRCRANAAHHSRCFFFAEPRGECRFSR 463
           + CRA AA   RC F  E R  CR S+
Sbjct: 49  FSCRACAAFFRRCHFLKENRRRCRLSK 75


>AC024201-3|AAK93866.1|  238|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 30 protein.
          Length = 238

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/42 (26%), Positives = 28/42 (66%)
 Frame = +2

Query: 215 LWLTISKIYSRER*QQNKHVRQNADKKKRRPCHDVTRARRNK 340
           LW+T++K+++ +R ++ K + + A+++KRR    + +A   +
Sbjct: 146 LWITVTKVFA-DREKKRKMLEERANEEKRRSTEALVQAAEKR 186


>Z30317-2|CAA82968.2| 1142|Caenorhabditis elegans Hypothetical
           protein T16G12.5 protein.
          Length = 1142

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 273 TCLFCCQRSREYIFDIVNQSVHEVQFLSVGFV 178
           TCLF C     YI DI+  ++  V  LS+G++
Sbjct: 574 TCLFACVEQIPYIKDILKSALDSV--LSIGYI 603


>L25598-1|AAA27942.1|  129|Caenorhabditis elegans Hypothetical
           protein C06G4.4 protein.
          Length = 129

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 333 VTKPPKKSEKLQQYKKAIAAEQTLRTTADVSSLQNHGESAV 455
           +++ PK+SEK   YKKA+A ++ ++    +      G+  V
Sbjct: 1   MSEAPKRSEKSADYKKAVAKQRRIKKLRKMKIKDRAGDVVV 41


>Z92834-8|CAB07394.2| 1589|Caenorhabditis elegans Hypothetical protein
            F39B2.4b protein.
          Length = 1589

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 30   QRVEQHQLYFDQFSVEHHKHQ 92
            Q+ +QHQ Y  Q    HH+HQ
Sbjct: 1565 QQHQQHQQYMQQQQQHHHQHQ 1585


>Z92834-7|CAB07385.2| 1587|Caenorhabditis elegans Hypothetical protein
            F39B2.4a protein.
          Length = 1587

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 30   QRVEQHQLYFDQFSVEHHKHQ 92
            Q+ +QHQ Y  Q    HH+HQ
Sbjct: 1563 QQHQQHQQYMQQQQQHHHQHQ 1583


>U33051-1|AAA85507.1| 1587|Caenorhabditis elegans sur-2 protein.
          Length = 1587

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 30   QRVEQHQLYFDQFSVEHHKHQ 92
            Q+ +QHQ Y  Q    HH+HQ
Sbjct: 1563 QQHQQHQQYMQQQQQHHHQHQ 1583


>AF038608-10|AAC25814.2|  327|Caenorhabditis elegans Serpentine
           receptor, class z protein78 protein.
          Length = 327

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 278 VGHAYFVVNVPVSIFLISLTKVC 210
           V H Y +VN+  S+F++ +T +C
Sbjct: 62  VNHFYHMVNISYSLFVLLITVIC 84


>AL034488-13|CAA22460.2|  345|Caenorhabditis elegans Hypothetical
           protein Y54G11A.12 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 328 RSRNVMAWPPLFFVGVLSDMLILL 257
           R RNV+ WPP   +G ++  LI L
Sbjct: 97  RERNVILWPPFAVLGGMAACLITL 120


>U29097-9|AAA68416.2|  343|Caenorhabditis elegans Hypothetical
           protein F18C5.7 protein.
          Length = 343

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = +3

Query: 216 FG*RYQKYTHGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAE 395
           FG     +    V ++ S   + PT K GG ++ +     +       ++Q        E
Sbjct: 164 FGGDGNSWVRRPVGSRYSPKYQCPTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYE 223

Query: 396 QTLRTTADVSSLQNHGESAVFQ 461
             L TT    +LQN G   VFQ
Sbjct: 224 NILETTMRPWALQNVGRGFVFQ 245


>AF067947-2|AAC19229.2|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.9 protein.
          Length = 273

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = +3

Query: 216 FG*RYQKYTHGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAE 395
           FG     +    V ++ S   + PT K GG ++ +     +       ++Q        E
Sbjct: 94  FGSDGNSWVRRPVGSRYSPKYQCPTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYE 153

Query: 396 QTLRTTADVSSLQNHGESAVFQ 461
             L TT    +LQN G   VFQ
Sbjct: 154 NILETTMRPWALQNVGRGFVFQ 175


>AF067947-1|AAC19233.1|  273|Caenorhabditis elegans Hypothetical
           protein T10B5.1 protein.
          Length = 273

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 21/82 (25%), Positives = 32/82 (39%)
 Frame = +3

Query: 216 FG*RYQKYTHGNVDNKISMSDKTPTKKSGGHAMTLRERGVTKPPKKSEKLQQYKKAIAAE 395
           FG     +    V ++ S   + PT K GG ++ +     +       ++Q        E
Sbjct: 94  FGSDGNSWVRRPVGSRYSPKYQCPTVKHGGGSVMVWGCFTSTSMGPLRRIQSIMDRFQYE 153

Query: 396 QTLRTTADVSSLQNHGESAVFQ 461
             L TT    +LQN G   VFQ
Sbjct: 154 NILETTMRPWALQNVGRGFVFQ 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,849,031
Number of Sequences: 27780
Number of extensions: 177823
Number of successful extensions: 705
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)