Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28g17
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal pro...   249   1e-66
AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal pro...   142   2e-34
AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl t...    29   2.8  
AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical ...    29   3.7  
Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical pr...    28   4.9  
AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical...    27   8.6  

>AC025721-4|AAK29902.1|  187|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform a protein.
          Length = 187

 Score =  249 bits (610), Expect = 1e-66
 Identities = 117/163 (71%), Positives = 136/163 (83%)
 Frame = +2

Query: 53  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRSVRYLKNVIEKKECIPFRRF 232
           YSR P+N  KSCKARGS+LRVHFKNT+E AMA+R MPLRR+  +L +V E KE +PFRRF
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAAMALRGMPLRRAQAFLNHVKEHKEIVPFRRF 65

Query: 233 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 412
           +GG+GR AQ KQ+ TTQGRWP KSA+FLL LL+NAESNA+ K LDVD LVI+HI V RA 
Sbjct: 66  HGGIGRAAQTKQWNTTQGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 125

Query: 413 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 541
            LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++  PTDDA
Sbjct: 126 KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 166


>AC025721-5|AAL32251.1|  159|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 17, isoform b protein.
          Length = 159

 Score =  142 bits (344), Expect = 2e-34
 Identities = 86/163 (52%), Positives = 101/163 (61%)
 Frame = +2

Query: 53  YSREPDNPAKSCKARGSNLRVHFKNTYETAMAIRKMPLRRSVRYLKNVIEKKECIPFRRF 232
           YSR P+N  KSCKARGS+LRVHFKNT+E A     M LR               +P RR 
Sbjct: 6   YSRAPENSTKSCKARGSDLRVHFKNTHEAA-----MALRG--------------MPLRRA 46

Query: 233 NGGVGRCAQAKQFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAP 412
              +    + K+    +           L LL+NAESNA+ K LDVD LVI+HI V RA 
Sbjct: 47  QAFLNHVKEHKEIVPFRR---------FLDLLKNAESNAEYKGLDVDHLVIEHINVQRAA 97

Query: 413 CLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDA 541
            LRRRTYRAHGRINPYMSSPCHIEV L+E+ED V++  PTDDA
Sbjct: 98  KLRRRTYRAHGRINPYMSSPCHIEVILAEKEDVVSK--PTDDA 138


>AF022973-3|AAC25799.1|  551|Caenorhabditis elegans Asparaginyl trna
           synthetase protein2 protein.
          Length = 551

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 18/54 (33%), Positives = 28/54 (51%)
 Frame = -2

Query: 614 LMSIPSSSSPFDAQAFSWKAFSLLGHHQ*GLPWRQHLRVR*DILRCGRETTCRG 453
           L+S   +   F + A+  +A + L  H+  L    HL  + D+LRC R T+C G
Sbjct: 334 LLSGEGADELFGSYAYMQRAPNALHLHKEILRRMHHLH-QYDVLRCDRSTSCHG 386


>AC006770-1|AAF60594.1| 1365|Caenorhabditis elegans Hypothetical
           protein Y46B2A.2 protein.
          Length = 1365

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 6/77 (7%)
 Frame = +2

Query: 290 WPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHI-QVNRAPCLRR-----RTYRAHGRI 451
           W K+    +  LL  AE++    + D+D++V   I   +  P L R       +R +G  
Sbjct: 488 WQKRGLPHVHMLLTMAENSKPRTSEDIDKIVQAEIPNPDNEPELHRIVTTAMMHRPYGAQ 547

Query: 452 NPYMSSPCHIEVCLSER 502
           NP+  SPC ++   S+R
Sbjct: 548 NPH--SPCMVDGHCSKR 562


>Z81041-7|CAE17709.1|   95|Caenorhabditis elegans Hypothetical
           protein C27A7.9 protein.
          Length = 95

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -2

Query: 479 CGRETTCRG*CDREHGMYVCVGRARDLPECGR*LACQRPKFCC 351
           CG +T  R  C  +    +C G   +L  C   +     K CC
Sbjct: 40  CGNQTRARS-CSSQTASCICTGNTTELQTCNNDVCIFPRKSCC 81


>AL132948-36|CAD57707.2|  186|Caenorhabditis elegans Hypothetical
           protein Y39B6A.48 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 24/95 (25%), Positives = 41/95 (43%), Gaps = 4/95 (4%)
 Frame = -3

Query: 316 EEFGGFLGPATLCCAKLLCLSTATNAAVEATEW-NTLFLFNHVFEVTNR--TTERHLSDC 146
           E FG   G       ++ C S  + +   + ++  T +++  VF    R   +ER +   
Sbjct: 30  ESFGRSSGAGAPIPRQVECYSCMSLSYQTSWKYLQTTYIYPKVFTDRCRDPNSERGMPTV 89

Query: 145 HCGLICVLKVNTEV*TTSFAGFRRVIR-LPRVTTH 44
            CG +CV  +  +V    F GF+ +   L RV  H
Sbjct: 90  MCGSVCVSLMEPDVEAGVFIGFKHIRGCLDRVLRH 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,550,322
Number of Sequences: 27780
Number of extensions: 306293
Number of successful extensions: 852
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)