Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28g16
(695 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence recepto... 205 1e-52
BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence recepto... 205 1e-52
AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated p... 205 1e-52
AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein. 205 1e-52
AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isofo... 33 1.3
AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 33 1.3
AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (auto... 33 1.3
AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (auto... 33 1.3
AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (auto... 33 1.3
AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (auto... 33 1.3
D79999-1|BAA11494.2| 1725|Homo sapiens KIAA0177 protein protein. 32 2.2
AF158255-1|AAD47250.1| 1724|Homo sapiens vault protein protein. 32 2.2
AF057160-1|AAC62491.1| 1724|Homo sapiens putative poly(ADP-ribos... 32 2.2
>BT006669-1|AAP35315.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 205 bits (500), Expect = 1e-52
Identities = 97/164 (59%), Positives = 125/164 (76%), Gaps = 2/164 (1%)
Frame = +1
Query: 139 MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAII 318
M+ K + EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+WR+ +++ + +
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAV 60
Query: 319 WFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--ADDKKMSRKEKDER 492
+ ++T ST+L+A AY+N KF LKH ++RKL AD++KMSRKEKDER
Sbjct: 61 LYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDER 120
Query: 493 ILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTV 624
ILWKKNEVADYEATT+SIFYNN LFL +VI++SF+IL+ F PTV
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTV 164
>BC017203-1|AAH17203.1| 185|Homo sapiens signal sequence receptor,
gamma (translocon-associated protein gamma) protein.
Length = 185
Score = 205 bits (500), Expect = 1e-52
Identities = 97/164 (59%), Positives = 125/164 (76%), Gaps = 2/164 (1%)
Frame = +1
Query: 139 MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAII 318
M+ K + EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+WR+ +++ + +
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAV 60
Query: 319 WFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--ADDKKMSRKEKDER 492
+ ++T ST+L+A AY+N KF LKH ++RKL AD++KMSRKEKDER
Sbjct: 61 LYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDER 120
Query: 493 ILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTV 624
ILWKKNEVADYEATT+SIFYNN LFL +VI++SF+IL+ F PTV
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTV 164
>AF110647-1|AAD48587.1| 185|Homo sapiens translocon-associated
protein gamma subunit protein.
Length = 185
Score = 205 bits (500), Expect = 1e-52
Identities = 97/164 (59%), Positives = 125/164 (76%), Gaps = 2/164 (1%)
Frame = +1
Query: 139 MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAII 318
M+ K + EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+WR+ +++ + +
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAV 60
Query: 319 WFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--ADDKKMSRKEKDER 492
+ ++T ST+L+A AY+N KF LKH ++RKL AD++KMSRKEKDER
Sbjct: 61 LYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDER 120
Query: 493 ILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTV 624
ILWKKNEVADYEATT+SIFYNN LFL +VI++SF+IL+ F PTV
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTV 164
>AF087907-1|AAP97205.1| 185|Homo sapiens SSR gamma protein.
Length = 185
Score = 205 bits (500), Expect = 1e-52
Identities = 97/164 (59%), Positives = 125/164 (76%), Gaps = 2/164 (1%)
Frame = +1
Query: 139 MSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAII 318
M+ K + EE+LLLQDFSRN+S KSSALF+GNAFIVSAIPIWL+WR+ +++ + +
Sbjct: 1 MAPKGSSKQQSEEDLLLQDFSRNLSAKSSALFFGNAFIVSAIPIWLYWRIWHMDLIQSAV 60
Query: 319 WFILVTAASTWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKL--ADDKKMSRKEKDER 492
+ ++T ST+L+A AY+N KF LKH ++RKL AD++KMSRKEKDER
Sbjct: 61 LYSVMTLVSTYLVAFAYKNVKFVLKHKVAQKREDAVSKEVTRKLSEADNRKMSRKEKDER 120
Query: 493 ILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTPTV 624
ILWKKNEVADYEATT+SIFYNN LFL +VI++SF+IL+ F PTV
Sbjct: 121 ILWKKNEVADYEATTFSIFYNNTLFLVVVIVASFFILKNFNPTV 164
>AY481573-1|AAS47698.1| 5202|Homo sapiens Usher syndrome 2A isoform B
protein.
Length = 5202
Score = 32.7 bits (71), Expect = 1.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 490 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTP-TVY 627
R++W + T YSI+ NN L+ T + + +ILR +P T+Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL513305-1|CAH73621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 32.7 bits (71), Expect = 1.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 490 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTP-TVY 627
R++W + T YSI+ NN L+ T + + +ILR +P T+Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL445650-4|CAH70621.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 32.7 bits (71), Expect = 1.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 490 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTP-TVY 627
R++W + T YSI+ NN L+ T + + +ILR +P T+Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL358858-2|CAH71588.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 32.7 bits (71), Expect = 1.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 490 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTP-TVY 627
R++W + T YSI+ NN L+ T + + +ILR +P T+Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL358452-1|CAI19189.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 32.7 bits (71), Expect = 1.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 490 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTP-TVY 627
R++W + T YSI+ NN L+ T + + +ILR +P T+Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>AL139259-1|CAI23041.1| 5202|Homo sapiens Usher syndrome 2A (autosomal
recessive, mild) protein.
Length = 5202
Score = 32.7 bits (71), Expect = 1.3
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +1
Query: 490 RILWKKNEVADYEATTYSIFYNNALFLTIVILSSFYILRTFTP-TVY 627
R++W + T YSI+ NN L+ T + + +ILR +P T+Y
Sbjct: 3037 RVIWTSPSNPNGVVTEYSIYVNNKLYKTGMNVPGSFILRDLSPFTIY 3083
>D79999-1|BAA11494.2| 1725|Homo sapiens KIAA0177 protein protein.
Length = 1725
Score = 31.9 bits (69), Expect = 2.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 159 SFYKRRRVIVARF*PECVHKIVCSLLRERFYC--FSNSNLVVLEGTFI 296
S ++ R++V F P C +C+L++E+ +C S + L GT I
Sbjct: 1078 SLFRNDRLLVYGFIPHCTQATLCALIQEKEFCTMVSTTELQKTTGTMI 1125
>AF158255-1|AAD47250.1| 1724|Homo sapiens vault protein protein.
Length = 1724
Score = 31.9 bits (69), Expect = 2.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 159 SFYKRRRVIVARF*PECVHKIVCSLLRERFYC--FSNSNLVVLEGTFI 296
S ++ R++V F P C +C+L++E+ +C S + L GT I
Sbjct: 1077 SLFRNDRLLVYGFIPHCTQATLCALIQEKEFCTMVSTTELQKTTGTMI 1124
>AF057160-1|AAC62491.1| 1724|Homo sapiens putative poly(ADP-ribosyl)
transferase protein.
Length = 1724
Score = 31.9 bits (69), Expect = 2.2
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = +3
Query: 159 SFYKRRRVIVARF*PECVHKIVCSLLRERFYC--FSNSNLVVLEGTFI 296
S ++ R++V F P C +C+L++E+ +C S + L GT I
Sbjct: 1077 SLFRNDRLLVYGFIPHCTQATLCALIQEKEFCTMVSTTELQKTTGTMI 1124
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,748,342
Number of Sequences: 237096
Number of extensions: 2062049
Number of successful extensions: 7169
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7165
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8007229802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -