Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28g16
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC025715-7|AAK68443.1| 178|Caenorhabditis elegans Hypothetical ... 135 2e-32
Z81571-5|CAB04615.1| 419|Caenorhabditis elegans Hypothetical pr... 31 1.0
AF016445-1|AAC69057.2| 367|Caenorhabditis elegans Serpentine re... 30 1.4
Z81571-3|CAB04613.1| 352|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z35604-3|CAA84679.1| 352|Caenorhabditis elegans Hypothetical pr... 29 2.4
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF039049-7|AAB94243.2| 300|Caenorhabditis elegans Serpentine re... 29 2.4
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 29 4.2
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 29 4.2
AL117195-20|CAB60768.1| 388|Caenorhabditis elegans Hypothetical... 28 5.5
U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical pr... 28 7.3
AL034364-2|CAA22252.1| 630|Caenorhabditis elegans Hypothetical ... 28 7.3
Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z48795-5|CAA88729.1| 337|Caenorhabditis elegans Hypothetical pr... 27 9.7
>AC025715-7|AAK68443.1| 178|Caenorhabditis elegans Hypothetical
protein Y38F2AR.2 protein.
Length = 178
Score = 135 bits (327), Expect = 2e-32
Identities = 67/151 (44%), Positives = 98/151 (64%)
Frame = +1
Query: 166 TKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAIIWFILVTAAS 345
TKEEELLL +S STK + FY NA I+S P++LF+ VH +EI +++ + L +
Sbjct: 5 TKEEELLLSSYSATSSTKGNLFFYLNALIISIAPLYLFYGVHQMEIQDSLVVWGLSAVGT 64
Query: 346 TWLLALAYRNTKFQLKHXXXXXXXXXXXXXMSRKLADDKKMSRKEKDERILWKKNEVADY 525
+LL+LA +N K LKH +S + A DKKM+ KEK+ER L++KNEVAD
Sbjct: 65 AYLLSLACKNQKCLLKHQIVMKRGSAVEREISGQYAADKKMTVKEKEERALFRKNEVADT 124
Query: 526 EATTYSIFYNNALFLTIVILSSFYILRTFTP 618
E+T S+FY N+L+LTI+++S+F++L P
Sbjct: 125 ESTYLSVFYTNSLYLTIMLVSAFFLLANVAP 155
>Z81571-5|CAB04615.1| 419|Caenorhabditis elegans Hypothetical
protein M01G12.6 protein.
Length = 419
Score = 30.7 bits (66), Expect = 1.0
Identities = 46/211 (21%), Positives = 83/211 (39%), Gaps = 10/211 (4%)
Frame = +1
Query: 46 LTYRILRVVLPLNSTQLLFVFVKVKVTYLVKMSGKNNKAFTKEEELLLQDFSRNVSTKSS 225
+T+ L V L + L+ +K LV+ +N TK + + S ++ S
Sbjct: 165 VTFDFLEVFLYFFNVILMICLLKRWKMNLVEKFPQN---ITKHMDYTPVNISIFLNCFVS 221
Query: 226 ALFYGN----AFIVSAIPIWLFWRVHSLEISTAIIWFILVTAASTWLLALAYRNTKFQLK 393
FYG +FI++ I L + +I+ + TW + ++Y N +L
Sbjct: 222 IAFYGLFQLLSFILALITYHPNLETSPLNLYRSILNLYYMPFIWTWAVTISYSNRVQKLL 281
Query: 394 HXXXXXXXXXXXXXMSRKLAD--DKKMSRKEKDERILWKKNEVADYEATTYSIFYNNALF 567
+ A K+M + +++R L + DY TT +FYN F
Sbjct: 282 EEYKNGLEIIIPCLLFPIFAGLLVKEMHKATENQRRLTSSKKTIDYNKTTRLVFYNTLFF 341
Query: 568 LTIVI---LSSFYILRTFTPTVYP-FIKCKS 648
+ +S +L + T ++P FI +S
Sbjct: 342 FISLFPLGVSRTLLLLSSTEFLWPMFIDLES 372
>AF016445-1|AAC69057.2| 367|Caenorhabditis elegans Serpentine
receptor, class w protein132 protein.
Length = 367
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 460 KKMSRKEKDERILWKKNEVADYEATTYSIFYNNALF 567
K++ + EK ++ N+ DY TT +FYN F
Sbjct: 246 KEIRKAEKRRKVSTSFNKTKDYRRTTQLVFYNTIFF 281
>Z81571-3|CAB04613.1| 352|Caenorhabditis elegans Hypothetical
protein M01G12.4 protein.
Length = 352
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
Frame = +1
Query: 460 KKMSRKEKDERILWKKNEVADYEATTYSIFYNNALFLTIVI---LSSFYILRTFTPTVYP 630
K+M + +++R L + DY TT +FYN F + +S +L + T ++P
Sbjct: 239 KEMHKATENQRRLTSSKKTIDYNKTTRLVFYNTLFFFISLFPLGVSRTLLLLSSTEFLWP 298
Query: 631 -FIKCKS 648
FI +S
Sbjct: 299 MFIDLES 305
>Z35604-3|CAA84679.1| 352|Caenorhabditis elegans Hypothetical
protein ZK1058.3 protein.
Length = 352
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/53 (24%), Positives = 21/53 (39%)
Frame = +1
Query: 124 TYLVKMSGKNNKAFTKEEELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFW 282
T +K K F K +++L D+ + K + N +P W FW
Sbjct: 178 TLPMKKHESQKKHFEKHGKVMLMDYLEQETLKKERIIMRNEHWTWLVPYWAFW 230
>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical
protein F48E3.3 protein.
Length = 1493
Score = 29.5 bits (63), Expect = 2.4
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Frame = -1
Query: 197 KSCNNNS-SSFVKALL-FFPDIFTK*VTLTFTNTNKSCVLFSGKTTLKILYVSFL---AF 33
K+C +NS SS+++A L F P K + L +N + SGK T L V + F
Sbjct: 757 KACESNSISSYIRAALDFLPMDQAKRLILKLSNEEYAADFISGKITFDDLSVGGMDTAKF 816
Query: 32 FAGERKLN 9
A ++KL+
Sbjct: 817 LADKKKLD 824
>AF039049-7|AAB94243.2| 300|Caenorhabditis elegans Serpentine
receptor, class x protein63 protein.
Length = 300
Score = 29.5 bits (63), Expect = 2.4
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 7/81 (8%)
Frame = -3
Query: 573 SQEKCIIVEN*V-----CGSFI--ICHLILFPQDSFVLFFSAHFFIISKFPGHFTGNSIL 415
SQ KC+I+ + + G F ICH Q F+ F ++ +I + G F NS++
Sbjct: 118 SQTKCLILVSWMYSLTYAGLFYLRICHFRFDEQVQFLTFSNSRICMIVGWNGDFIKNSVI 177
Query: 414 PAHSNTVLQLELSVTVGKSQQ 352
A ++ L +VT+ KS+Q
Sbjct: 178 VA----IIMLLDTVTIMKSRQ 194
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 415 PCAQQHGASTGT*CY-GRQEPATRC*LPLPG*TK*LRCLFPMNVPSRTTKLE 263
PCA G TG+ C+ G Q T C P P RC P+NV + L+
Sbjct: 336 PCAPGQGCGTGSYCHVGAQTQTTVC-CPKPAAVD--RCQQPLNVGIGNSNLQ 384
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 28.7 bits (61), Expect = 4.2
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -2
Query: 415 PCAQQHGASTGT*CY-GRQEPATRC*LPLPG*TK*LRCLFPMNVPSRTTKLE 263
PCA G TG+ C+ G Q T C P P RC P+NV + L+
Sbjct: 336 PCAPGQGCGTGSYCHVGAQTQTTVC-CPKPAAVD--RCQQPLNVGIGNSNLQ 384
>AL117195-20|CAB60768.1| 388|Caenorhabditis elegans Hypothetical
protein Y57A10A.27 protein.
Length = 388
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/42 (40%), Positives = 25/42 (59%)
Frame = +1
Query: 106 FVKVKVTYLVKMSGKNNKAFTKEEELLLQDFSRNVSTKSSAL 231
F+KV +T L + + K+ K ELL++ R STK+SAL
Sbjct: 10 FLKVDLTRLAEDDETHQKSTKKHTELLIELIDRK-STKASAL 50
>U00032-9|AAA50631.1| 229|Caenorhabditis elegans Hypothetical
protein F37A4.3 protein.
Length = 229
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/38 (26%), Positives = 24/38 (63%)
Frame = +1
Query: 463 KMSRKEKDERILWKKNEVADYEATTYSIFYNNALFLTI 576
++ + +++++ W A+YEA + ++N +LFLT+
Sbjct: 15 RVGKLMRNDKLAWS----AEYEAKKFKFYHNTSLFLTL 48
>AL034364-2|CAA22252.1| 630|Caenorhabditis elegans Hypothetical
protein W06D4.4 protein.
Length = 630
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 178 ELLLQDFSRNVSTKSSALFYGNAFIVSAIPIWLFWRVHSLEISTAII 318
E+L VS++ + N +AIP+W+ W + +ST ++
Sbjct: 530 EILRFPIDGRVSSQKCVVNIDNMSSSNAIPMWMEWEFGGINLSTGLL 576
>Z73970-2|CAA98243.2| 1560|Caenorhabditis elegans Hypothetical
protein C29A12.4 protein.
Length = 1560
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 261 NSNLVVLEGTFIGNKHRNYLVYPGN 335
++NL++ + FIGN N LVYP +
Sbjct: 581 SANLIIDDPIFIGNVPNNSLVYPSS 605
>Z48795-5|CAA88729.1| 337|Caenorhabditis elegans Hypothetical
protein R05H5.6 protein.
Length = 337
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Frame = +1
Query: 70 VLPLNSTQLLFVFVKVKVTYLVKMSGKNNKA--FTKEEELLLQDFSRNVS 213
+L +NS L+F + VK+ ++K +N+ + + EE ++ FS +S
Sbjct: 188 LLAINSVNLVFNYFLVKINTILKEKWRNSLSTRYQMEENIITTKFSTFIS 237
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,594,429
Number of Sequences: 27780
Number of extensions: 330835
Number of successful extensions: 897
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 864
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 896
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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