Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28g10
(703 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 185 6e-48
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 116 2e-27
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 105 6e-24
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 84 2e-17
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 76 4e-15
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 76 6e-15
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 75 1e-14
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 71 2e-13
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 71 2e-13
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 70 4e-13
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 69 5e-13
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 63 4e-11
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 62 1e-10
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 62 1e-10
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 60 2e-10
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 58 9e-10
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 58 9e-10
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 58 1e-09
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 56 6e-09
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 54 2e-08
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 50 3e-07
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 37 0.002
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 37 0.002
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 36 0.004
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 31 0.21
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 29 0.85
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 27 2.0
SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces pom... 27 2.6
SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 27 3.4
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 26 4.5
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 26 4.5
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 6.0
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 25 7.9
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.9
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 185 bits (450), Expect = 6e-48
Identities = 85/146 (58%), Positives = 107/146 (73%)
Frame = +1
Query: 253 NMRRPDWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEA 432
N+ + DW + +L PF K+FY H V RS EV EYR + E+ V G+ V P+ FEEA
Sbjct: 68 NLVKKDWKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEA 127
Query: 433 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ 612
FP+YV + VK +G++ PTPIQ Q WP+AMSG+++VG++ TGSGKTL+Y LPAIVHIN Q
Sbjct: 128 GFPNYVLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQ 187
Query: 613 PPIRRGDGPIALVLAPTRELAQQIQQ 690
P + GDGPI LVLAPTRELA QIQQ
Sbjct: 188 PLLSPGDGPIVLVLAPTRELAVQIQQ 213
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 116 bits (280), Expect = 2e-27
Identities = 53/140 (37%), Positives = 87/140 (62%), Gaps = 1/140 (0%)
Frame = +1
Query: 268 DWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNKHE-VTVSGVEVHNPIQYFEEANFPD 444
D ++ + F K+FY + SP EV+E R + + + G++ P+ + +
Sbjct: 368 DHSKINYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSA 427
Query: 445 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 624
+ ++GY++PT IQAQ P SG++++GVA+TGSGKT+A++LP HI +Q P++
Sbjct: 428 QTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLK 487
Query: 625 RGDGPIALVLAPTRELAQQI 684
G+GPIA+++ PTRELA QI
Sbjct: 488 TGEGPIAIIMTPTRELAVQI 507
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 105 bits (252), Expect = 6e-24
Identities = 48/111 (43%), Positives = 76/111 (68%), Gaps = 3/111 (2%)
Frame = +1
Query: 364 RNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVG 543
+ + +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ + K+L+G
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIG 291
Query: 544 VAQTGSGKTLAYILPAIVHINNQPPIRRGD---GPIALVLAPTRELAQQIQ 687
+A+TGSGKT A+I+P I+ I+ PP+ + GP A+VLAPTRELAQQIQ
Sbjct: 292 IAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLAPTRELAQQIQ 342
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 83.8 bits (198), Expect = 2e-17
Identities = 44/112 (39%), Positives = 71/112 (63%), Gaps = 3/112 (2%)
Frame = +1
Query: 355 EEYRNKHEVTVSGVEVHN---PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMS 525
+ Y KH ++ + + PI F+E + +++G+K YKEPTPIQA WP ++
Sbjct: 144 DRYIKKHNISFADPKSSENLLPILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLA 201
Query: 526 GKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 681
G+++VG+A+TGSGKT+A+ +PA+ ++N + P LV++PTRELA Q
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLNGLSDNK--SVPRVLVVSPTRELAIQ 251
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 76.2 bits (179), Expect = 4e-15
Identities = 38/102 (37%), Positives = 61/102 (59%), Gaps = 1/102 (0%)
Frame = +1
Query: 391 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKT 570
G+ + + F + N +Q+ + +++PT +Q++ P+A+ GK+LV A+TGSGKT
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKT 65
Query: 571 LAYILPAIVHINNQPPIRRGD-GPIALVLAPTRELAQQIQQV 693
AY++P + + Q I G AL+L PTRELAQQ+ V
Sbjct: 66 AAYLIPILELLLKQKQIDENQRGIFALLLVPTRELAQQVYNV 107
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 75.8 bits (178), Expect = 6e-15
Identities = 39/91 (42%), Positives = 58/91 (63%), Gaps = 1/91 (1%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 600
F+E D + + + +G+K PTPIQ + P+ ++ ++++G+AQTGSGKT A+ LP I
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQE 107
Query: 601 I-NNQPPIRRGDGPIALVLAPTRELAQQIQQ 690
+ NN P A+VLAPTRELA QI +
Sbjct: 108 LWNNPSPF------FAVVLAPTRELAYQISE 132
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 74.9 bits (176), Expect = 1e-14
Identities = 39/94 (41%), Positives = 55/94 (58%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 600
F+ N +++ V G+K+ TP+QA P+ + K+LV A TGSGKTLAY+LP
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFDK 62
Query: 601 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 702
+ + G G AL++APTRELA QI V +
Sbjct: 63 VTRRDTDETGLG--ALIVAPTRELATQIFNVTKE 94
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 70.9 bits (166), Expect = 2e-13
Identities = 36/92 (39%), Positives = 56/92 (60%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 600
F+ N + +G+ +G++ PT IQ + P+A+ GK++VG A TGSGKT A+I+P +
Sbjct: 261 FQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPILER 320
Query: 601 INNQPPIRRGDGPIALVLAPTRELAQQIQQVA 696
+ +P ++ L+L PTRELA Q VA
Sbjct: 321 LLYRP--KKVPTTRVLILCPTRELAMQCHSVA 350
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 70.5 bits (165), Expect = 2e-13
Identities = 41/120 (34%), Positives = 72/120 (60%), Gaps = 2/120 (1%)
Frame = +1
Query: 349 EVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG 528
E E+ R + V ++ + I+ F + + +Q+ +K MG++ T IQ + P ++G
Sbjct: 68 ENEDERVQKSVNLNASSTSD-IEKFSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAG 126
Query: 529 KNLVGVAQTGSGKTLAYILPAI--VHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 702
++++G A+TGSGKTLA+++P I ++ P R G G ++++PTRELA QI VA +
Sbjct: 127 RDVLGAAKTGSGKTLAFLIPTIEMLYALKFKP-RNGTG--VIIISPTRELALQIFGVAKE 183
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 69.7 bits (163), Expect = 4e-13
Identities = 42/117 (35%), Positives = 62/117 (52%), Gaps = 13/117 (11%)
Frame = +1
Query: 379 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 558
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI SG++L+ AQTG
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTG 216
Query: 559 SGKTLAYILPAI-VHINNQP---PIRRGDG---------PIALVLAPTRELAQQIQQ 690
SGKT ++ P + + + P P+ + G P L+LAPTREL QI +
Sbjct: 217 SGKTAGFLFPILSLAFDKGPAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHE 273
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 69.3 bits (162), Expect = 5e-13
Identities = 34/94 (36%), Positives = 55/94 (58%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 600
F+ + + + G+K PTPIQ + P+ + G+++VG+A+TGSGKT A+++P I H
Sbjct: 71 FQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMIEH 130
Query: 601 INNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 702
+ + AL+L+P RELA Q +V D
Sbjct: 131 LKS---TLANSNTRALILSPNRELALQTVKVVKD 161
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 62.9 bits (146), Expect = 4e-11
Identities = 31/91 (34%), Positives = 55/91 (60%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 600
FE+ + G+ G++ P+PIQ + PIA+SG++++ A+ G+GKT A+++P++
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEK 105
Query: 601 INNQPPIRRGDGPIALVLAPTRELAQQIQQV 693
++ + + L+L PTRELA Q QV
Sbjct: 106 VDTKKSKIQ-----TLILVPTRELALQTSQV 131
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 61.7 bits (143), Expect = 1e-10
Identities = 32/99 (32%), Positives = 59/99 (59%), Gaps = 2/99 (2%)
Frame = +1
Query: 412 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSG--KNLVGVAQTGSGKTLAYIL 585
++ FEE + +G+ +M +++P+ IQ + P+ +S +N++G +Q+G+GKT A+ L
Sbjct: 113 VKSFEELELKPELLKGIYSMKFQKPSKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFAL 172
Query: 586 PAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVAAD 702
+ ++ P P A+ LAP+RELA+QI V +
Sbjct: 173 TMLSRVDASVP-----KPQAICLAPSRELARQIMDVVTE 206
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 61.7 bits (143), Expect = 1e-10
Identities = 38/109 (34%), Positives = 58/109 (53%)
Frame = +1
Query: 355 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 534
EE E+ + + +F E + +K + T IQ Q P A+ G++
Sbjct: 19 EEEEEIEELNSQIEALSETVDHFAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRD 78
Query: 535 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQ 681
++G A+TGSGKTLA+I+P I ++ + DG ALV++PTRELA Q
Sbjct: 79 ILGAAKTGSGKTLAFIVPLIENLYRKKWTSL-DGLGALVISPTRELAIQ 126
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 60.5 bits (140), Expect = 2e-10
Identities = 45/144 (31%), Positives = 75/144 (52%), Gaps = 3/144 (2%)
Frame = +1
Query: 274 DSVSLQPFNKNFYD--PHPTVLKRSPYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDY 447
D++ L N F + P P++ ++ +++ K + V+G +NP+ EE FP+
Sbjct: 2 DALKLLTTNVKFKNKVPQPSIKEKEAKKLQGI-TKGKAKVTG---NNPVDPIEE--FPEG 55
Query: 448 VQ-QGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIR 624
+ + +K E T IQ P S ++L+ A TGSGKT+AY+ P + + P
Sbjct: 56 ILCENLKKQNITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP-- 113
Query: 625 RGDGPIALVLAPTRELAQQIQQVA 696
G A+++APTREL +QI + A
Sbjct: 114 --GGYRAIIVAPTRELCEQIYRQA 135
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 58.4 bits (135), Expect = 9e-10
Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +1
Query: 421 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVH 600
F + ++ +K + EPT IQ + G+N +G A+TGSGKT A+ LP I
Sbjct: 9 FSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIEK 68
Query: 601 INNQPPIRRGDGPIALVLAPTRELAQQI-QQVAA 699
+ P G AL+L PTRELA QI +Q AA
Sbjct: 69 WSKDP-----SGIFALILTPTRELAIQIDEQFAA 97
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 58.4 bits (135), Expect = 9e-10
Identities = 37/113 (32%), Positives = 62/113 (54%)
Frame = +1
Query: 355 EEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKN 534
+E E+T S E N + FEE N + + +G+ GY+ P+ +Q++ G++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRD 60
Query: 535 LVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 693
++ AQ+G+GKT + + + I+ +R AL+L+PTRELA QIQ V
Sbjct: 61 VIAQAQSGTGKTATFSIGILQSIDLS--VRDTQ---ALILSPTRELAVQIQNV 108
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 58.0 bits (134), Expect = 1e-09
Identities = 35/75 (46%), Positives = 46/75 (61%), Gaps = 2/75 (2%)
Frame = +1
Query: 472 GYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPI--A 645
G+ +P PIQ+ P A G +++G A TGSGKTLA+ +P + H +R D A
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHC-----LRNVDAKYVQA 195
Query: 646 LVLAPTRELAQQIQQ 690
LV+APTRELA QI Q
Sbjct: 196 LVVAPTRELAHQICQ 210
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 55.6 bits (128), Expect = 6e-09
Identities = 35/80 (43%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Frame = +1
Query: 469 MGYKEPTPIQAQGWPIAMS--GKNLVGVAQTGSGKTLAYILPAIVHINNQPP--IRRGDG 636
M PT IQ+ P ++ K+ AQTGSGKTLAY+LP + + P R G
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 637 PIALVLAPTRELAQQIQQVA 696
A+++APTREL QQI VA
Sbjct: 217 IYAVIMAPTRELCQQIYNVA 236
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 54.0 bits (124), Expect = 2e-08
Identities = 30/94 (31%), Positives = 55/94 (58%)
Frame = +1
Query: 412 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTGSGKTLAYILPA 591
I F++ N + +G+ G++ P+ IQ + + ++++ AQ+G+GKT + +
Sbjct: 18 IDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATFSISV 77
Query: 592 IVHINNQPPIRRGDGPIALVLAPTRELAQQIQQV 693
+ I+ +++ AL+LAPTRELAQQIQ+V
Sbjct: 78 LQKIDTS--LKQCQ---ALILAPTRELAQQIQKV 106
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 50.0 bits (114), Expect = 3e-07
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 1/104 (0%)
Frame = +1
Query: 388 SGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW-PIAMSGKNLVGVAQTGSG 564
S ++ P + E A+ + + G+++ TP+Q + + + +N V A+TG+G
Sbjct: 29 STMKSQQPTLFSEVASLSSTFKNSLSRAGFEKMTPVQQRVLNEVFPNEENAVVQAKTGTG 88
Query: 565 KTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQIQQVA 696
KTLA++L A + P +++L+PTRELA QI + A
Sbjct: 89 KTLAFLLVAFKDVLKGKPRLNSSKIHSVILSPTRELALQIFEEA 132
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 532 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 684
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 37.1 bits (82), Expect = 0.002
Identities = 18/51 (35%), Positives = 29/51 (56%)
Frame = +1
Query: 532 NLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQQI 684
NL+ V TG GK+L++++PA++ Q P + + LVL P L Q +
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP-GKVMNMVTLVLVPMMSLRQDM 1257
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 36.3 bits (80), Expect = 0.004
Identities = 21/60 (35%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Frame = +1
Query: 511 PIAMSGKNLVGVAQTGSGKTLAYILPAIVHINNQ--PPIRRGDGPIALVLAPTRELAQQI 684
P+ G ++ A TGSGKTL+Y++P + ++++ P +R +V+ PTREL Q+
Sbjct: 168 PMYSYGGDVCVSAATGSGKTLSYVIPIVQCLSHRTVPRLR------CVVIVPTRELTVQV 221
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 30.7 bits (66), Expect = 0.21
Identities = 19/53 (35%), Positives = 30/53 (56%)
Frame = +1
Query: 520 MSGKNLVGVAQTGSGKTLAYILPAIVHINNQPPIRRGDGPIALVLAPTRELAQ 678
+SGK++ + TG GK+L Y LPA++ + RG + LV++P L Q
Sbjct: 532 LSGKDVFILMPTGGGKSLCYQLPAVI----EGGASRG---VTLVISPLLSLMQ 577
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 28.7 bits (61), Expect = 0.85
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 273 PIWASHVLPSREFFFPTKASRSSKSIATVAKPRRIIAEFVASSKFGTTVSTAIIPV--TR 100
P S V PS F ++ S +S AT+AK + +S KF + V T
Sbjct: 143 PFLKSTVPPSSLQFSRSQPPESKESDATLAKCWKE-KSLTSSCKFLFEAKERLTSVVETE 201
Query: 99 HDYFSDLVEDVYLNYGFFLTQG 34
H+Y+++LV+ ++ F +QG
Sbjct: 202 HEYYTELVKVKEASWPLFNSQG 223
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 27.5 bits (58), Expect = 2.0
Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = +1
Query: 469 MGYKEPTPIQAQGWPIAM-SGKNLVGVAQTGSGKTLAYILPAIVHINN 609
+ Y+ IQ+ +PIA + +N++ A TG+GKT +L + I+N
Sbjct: 273 LSYQTLNRIQSLVYPIAYKTNENMLICAPTGAGKTDVALLAMLQTISN 320
>SPBC359.02 |alr2||alanine racemase Alr2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 370
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/85 (28%), Positives = 36/85 (42%)
Frame = +1
Query: 379 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAQTG 558
V V VE PI Y GV +GY + P G P+ ++GK + V
Sbjct: 253 VCVKHVEKDQPIGYGGAYVTTRDSLIGVVAIGYGDGFPQVRNGCPVIINGKRVPTV---- 308
Query: 559 SGKTLAYILPAIVHINNQPPIRRGD 633
GK +L + + + P ++RGD
Sbjct: 309 -GKVCMDML--AIDVTDVPDVKRGD 330
>SPAC17H9.18c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 105
Score = 26.6 bits (56), Expect = 3.4
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 483 FFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISIL 358
FF Y ++ I+ CFF +NR T+S +VF ++
Sbjct: 16 FFWKQSKYQSIYAIQIRCFFLTVNRTPIPKQTFSLIVFYILI 57
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 26.6 bits (56), Expect = 3.4
Identities = 25/140 (17%), Positives = 55/140 (39%), Gaps = 4/140 (2%)
Frame = -2
Query: 519 SYRPALSLNGRRFFVTHCLYTLLHIIRKICFFKVLNRIMNLNATYSYLVFISILFDFIW* 340
+Y L +G H L ++ + F K ++ + + SY++ + + +W
Sbjct: 686 AYTANLERDGVFVIADHTLSENPEALKALLFSKDISNLETIQQNCSYVLILCPVHPIVWK 745
Query: 339 SFENCRMWIIKVFVERLE*NRIPIWAS----HVLPSREFFFPTKASRSSKSIATVAKPRR 172
+ F L+ NR+ I AS H+ ++ F + ++ + R
Sbjct: 746 G--RIEKVDVPDFSVDLKTNRVRIIASNKREHLQAAKSVFQSISGDLVTLAVECRSSITR 803
Query: 171 IIAEFVASSKFGTTVSTAII 112
+ EF+ SK +S+ ++
Sbjct: 804 VYKEFIRLSKLCMRISSTVV 823
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 343 PYEVEEYRNKHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 474
P+E + + KH++ ++ V +Q +E+ F + ++ VK G
Sbjct: 256 PFEPPKPKTKHKLDITSVSEFEALQAYEKEKFQEMIKH-VKDAG 298
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.2 bits (55), Expect = 4.5
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +1
Query: 343 PYEVEEYRNKHEVTVS 390
PYE++ YRNKH +S
Sbjct: 253 PYEIQVYRNKHWFPIS 268
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 318 WIIKVFVERLE*NRIPIWASHVLPSREF 235
W K+F ++ N+I +W +H P R F
Sbjct: 1165 WNDKIFGQQPNGNKILLWQNHERPPRPF 1192
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = -2
Query: 117 IIPVTR-HDYFSDLVEDVYLNYGFFLTQ 37
++PVT+ + D++ED++ NY F +T+
Sbjct: 221 VVPVTQVKNAPDDVLEDLFKNYDFIVTE 248
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.9
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -1
Query: 472 PLSLHLVAHNQENL--LLQSIE 413
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.405
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,829,399
Number of Sequences: 5004
Number of extensions: 61058
Number of successful extensions: 217
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 325165428
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -