Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28g07
         (669 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur...    38   0.001
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    29   0.61 
SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   4.3  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    26   4.3  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   4.3  
SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomy...    25   7.5  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   7.5  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    25   7.5  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    25   9.9  

>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
           deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 398

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
 Frame = +1

Query: 265 NLPASNPLGSPLGFAPPPDDRTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNT 444
           N P       P+   PP DD T  +Q +T    + S+     I+G+ G  +  LR+ TN 
Sbjct: 67  NQPEPTSQVPPISAKPPMDDATYATQQLT-LRALLSTREAGIIIGKAGKNVAELRSTTNV 125

Query: 445 ---YIKTPVRGEEPVFVVTGRKEDVARAKREIL 534
                K      + V  ++G  E+V RA R I+
Sbjct: 126 KAGVTKAVPNVHDRVLTISGPLENVVRAYRFII 158


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1151

 Score = 29.1 bits (62), Expect = 0.61
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +2

Query: 5    SSARCDANTRALHEQTRTLKRSNAPRLLFFYSVP 106
            S+A     TRA+ EQ +TLK++    +LF + +P
Sbjct: 1090 STALTPEETRAIQEQAKTLKKAGMDFMLFSFWLP 1123


>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 32  RALHEQTRTLKRSNAPRLLFFYSVPVTERETSP 130
           R  +   R  +RSN+P      S+PV +R++SP
Sbjct: 255 RERYSYHRRRERSNSPSYTKNESIPVVDRDSSP 287


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +1

Query: 271 PASNPLGSPLGFAPPPDDRTKKSQNMTECVPVPSSEHVAEIVGRQ 405
           P S+ L SP+  + PP   T   Q+    VPV   E  A+ + +Q
Sbjct: 357 PVSHHLKSPVRTSFPPASTTASKQDSPSTVPVDKQE-TAKPINKQ 400


>SPAC29B12.07 |sec16||multidomain vesicle coat component
            Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 8    SARCDANTRALHEQTRTLKRSNAPR 82
            SA  D++  +LH+++  L R+N+PR
Sbjct: 1029 SATLDSDKSSLHKRSAELSRNNSPR 1053


>SPBC115.02c |||AFG1 family mitochondrial ATPase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 454

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = +1

Query: 262 DNLPASNPLGSPLGFAPPPDDR--TKKSQNMTECVPVPSSEHVAEIVGRQGCKIKAL 426
           D++PA    GS L +  P       KKS  +T  +PVP       + G  GC   AL
Sbjct: 80  DSMPAEK--GSILSWISPLKKMFSRKKSPTLTSSLPVPGMPKGIYLYGDVGCGKTAL 134


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -2

Query: 509 TSSLRPVTTNTGSSPLTG 456
           T+  +P  +NTGS+P TG
Sbjct: 252 TNDSKPAASNTGSAPTTG 269


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 477 GLLAPHRCLDVSVSLRSQSFNLAPLSSDDLGDVLGG 370
           G+ AP   +D S S  ++ F    LSS+ L   LGG
Sbjct: 491 GISAPSASVDSSASRLARDFGSLSLSSNSLLGSLGG 526


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = -2

Query: 323 SSGGGANPSGLPSGLLAG 270
           +S G +NP+ +P+G L+G
Sbjct: 197 TSNGNSNPAAVPAGFLSG 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,039,087
Number of Sequences: 5004
Number of extensions: 33941
Number of successful extensions: 122
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)