Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28g07
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_08_0048 - 28022335-28022520,28022607-28022699,28022804-280228...    31   0.63 
11_06_0377 - 22900042-22900452,22900527-22902236                       31   0.83 
05_01_0426 + 3364341-3364713,3364823-3364963,3365389-3365510,336...    30   1.5  
03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648     30   1.5  
04_03_1030 + 21838282-21838593                                         30   1.9  
09_04_0436 - 17558603-17559265,17559322-17559384                       29   3.3  
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580...    29   3.3  
07_03_1439 - 26556398-26556418,26556700-26557743                       29   3.3  
08_01_1068 + 10899965-10900129,10900408-10900562,10900688-109009...    29   4.4  
02_05_0551 + 29907768-29907909,29907995-29909280                       29   4.4  
01_05_0092 - 18058555-18060084                                         29   4.4  
03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131     28   7.7  

>11_08_0048 -
           28022335-28022520,28022607-28022699,28022804-28022882,
           28022951-28023061,28023133-28023390,28023468-28023970,
           28024094-28024729,28024778-28025116
          Length = 734

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +1

Query: 271 PASNPLGSPLGFAPPPDDRTKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTY- 447
           P ++P GS    A PP ++  + Q++    P PS    ++    +G  +  +  +T+T+ 
Sbjct: 301 PVASPPGSEPPVASPPTEKDAEEQSLVPDQPEPSQLEPSQPEELKGADVPVM-VRTHTHK 359

Query: 448 IKTPVRGEEPVFVVTGRKEDVARAK 522
            K+  + +  V    GR +D+  A+
Sbjct: 360 AKSASKKKYMVTAFRGRDKDIINAE 384


>11_06_0377 - 22900042-22900452,22900527-22902236
          Length = 706

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +3

Query: 237 GAEHAEPGRQLAGEQPAGEPARVR 308
           GA H   GR+L G +P GE ARVR
Sbjct: 404 GANHNGEGRRLRGPRPDGEEARVR 427


>05_01_0426 +
           3364341-3364713,3364823-3364963,3365389-3365510,
           3365939-3366202,3366289-3366419,3366819-3367026,
           3367121-3367186,3367276-3367353,3368038-3368079
          Length = 474

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 282 PAGEPARVRASSGRPDQEVAEHD 350
           P   PAR   S  +PD ++AEHD
Sbjct: 15  PKSSPARSTRSKSKPDSDIAEHD 37


>03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648
          Length = 587

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -2

Query: 413 LHPCRPTISATCSEDGTGTHSVMFCDFLVRSSG-GGANPSGLPSG 282
           LHP    +  TCS+  +G  +V+F  F     G  G  P  +P G
Sbjct: 135 LHPAECGVGETCSKATSGQFAVLFMSFAFLVLGSAGIRPCSMPFG 179


>04_03_1030 + 21838282-21838593
          Length = 103

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 340 ATSWSGRPEEARTRAGSPAGCSPASCRPGSACSA 239
           +T+W+GR    R  A    GC+PA+ R   A  A
Sbjct: 14  STAWTGRSPATRPGATESTGCNPATRRGAEASMA 47


>09_04_0436 - 17558603-17559265,17559322-17559384
          Length = 241

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 538 PRGSHAWRARRPPCGR*PQTRAPR 467
           P  S +WR   PPC R P +RA R
Sbjct: 179 PTPSLSWRTTPPPCQRHPSSRASR 202


>08_01_0673 -
           5805218-5805349,5805936-5806026,5806416-5806471,
           5806571-5806852,5806924-5807057,5807088-5807163,
           5807247-5807747,5808454-5809037,5809579-5809597
          Length = 624

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/42 (33%), Positives = 25/42 (59%)
 Frame = +1

Query: 328 TKKSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIK 453
           T+ S +    + VP+S+  A ++G+ G  IK LR+ +  +IK
Sbjct: 139 TRDSDDEEANILVPASQS-ASVIGKSGAVIKRLRSTSKAFIK 179


>07_03_1439 - 26556398-26556418,26556700-26557743
          Length = 354

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = +1

Query: 232 ALELSMLSLGDNLPASNPLGSPLGFAPPPDD 324
           AL L++LSLG  L A+NPL +P   A   DD
Sbjct: 101 ALSLAVLSLGAVLSAANPLLTPDELARQADD 131


>08_01_1068 +
           10899965-10900129,10900408-10900562,10900688-10900996,
           10901870-10901939,10902504-10902802,10904305-10904724,
           10906063-10906324
          Length = 559

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 122 FPSRSLVLNKKIIDGVRSIVLRCAFVHVGRVCSRRSALR 6
           F   ++V N   +DG  S V RC+ V   R CS  S L+
Sbjct: 256 FKGCTVVGNHSDVDGAASTVRRCSSVANSRCCSAHSRLQ 294


>02_05_0551 + 29907768-29907909,29907995-29909280
          Length = 475

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +3

Query: 234 SGAEHAEPGRQLAGEQPAGEPARVRASSG 320
           SGA  A PG QLAG + A  PA +  S G
Sbjct: 110 SGAAAAAPGMQLAGSKAATVPANLGFSIG 138


>01_05_0092 - 18058555-18060084
          Length = 509

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 228 AGSGAEHAEPGRQLAGEQPAGEPARVRASSGRPDQEVAEHDG 353
           A SG E  +PG+      P G+ A  R+ SG      A  DG
Sbjct: 21  AESGEEGGDPGKDEVAAPPKGDSALPRSGSGFGSGNAAAPDG 62


>03_02_0645 + 10133658-10134140,10134280-10134627,10134787-10135131
          Length = 391

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 349 SCSATSWSGRPEEARTRAGSPAGCSPASCRP 257
           SC A S S  PE     A SPA  +P +  P
Sbjct: 21  SCKAASASASPESVSVAASSPAQAAPPAGSP 51


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,591,077
Number of Sequences: 37544
Number of extensions: 305494
Number of successful extensions: 1467
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1465
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)