Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28g07
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein. 139 1e-33
AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess... 139 1e-33
AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess... 139 1e-33
Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical pr... 37 0.011
U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical pr... 33 0.14
U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical pr... 33 0.14
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n... 32 0.42
U41991-9|AAA83349.1| 297|Caenorhabditis elegans Hypothetical pr... 29 3.0
U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical... 29 3.9
Z82083-2|CAB04970.1| 263|Caenorhabditis elegans Hypothetical pr... 28 6.9
>U67864-1|AAC47313.1| 415|Caenorhabditis elegans MEX-3 protein.
Length = 415
Score = 139 bits (337), Expect = 1e-33
Identities = 76/124 (61%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Frame = +1
Query: 208 EDQRAFKLALELSMLSLGDNLPASNPLGSPLGFAPPPDDRTKKS-QNMTECVPVPSSEHV 384
E+Q A+KL ++ + +P+ P A + RT QN+TE V VP+SEHV
Sbjct: 3 EEQIAYKLP---GAWYYEEDTASCSPVSDPEDIAQFLNYRTSIGVQNVTESVEVPTSEHV 59
Query: 385 AEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAEHFSQIR 564
AEIVGRQGCKIKALRAKTNTYIKTPVRGE+P+FVVTGR EDV AKREI AAEHF+QIR
Sbjct: 60 AEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREIDCAAEHFTQIR 119
Query: 565 ASRK 576
ASR+
Sbjct: 120 ASRR 123
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = +1
Query: 346 MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKR 525
+T V VP V +VG +G IK ++ T+TYI TP R EPVF VTG +V A++
Sbjct: 137 ITSYVRVPLRV-VGLVVGPKGATIKRIQQDTHTYIITPSREREPVFEVTGLPHNVEAARK 195
Query: 526 EI 531
EI
Sbjct: 196 EI 197
>AF003139-9|AAK73872.1| 415|Caenorhabditis elegans Muscle excess
protein 3, isoform a protein.
Length = 415
Score = 139 bits (337), Expect = 1e-33
Identities = 76/124 (61%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Frame = +1
Query: 208 EDQRAFKLALELSMLSLGDNLPASNPLGSPLGFAPPPDDRTKKS-QNMTECVPVPSSEHV 384
E+Q A+KL ++ + +P+ P A + RT QN+TE V VP+SEHV
Sbjct: 3 EEQIAYKLP---GAWYYEEDTASCSPVSDPEDIAQFLNYRTSIGVQNVTESVEVPTSEHV 59
Query: 385 AEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAEHFSQIR 564
AEIVGRQGCKIKALRAKTNTYIKTPVRGE+P+FVVTGR EDV AKREI AAEHF+QIR
Sbjct: 60 AEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREIDCAAEHFTQIR 119
Query: 565 ASRK 576
ASR+
Sbjct: 120 ASRR 123
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = +1
Query: 346 MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKR 525
+T V VP V +VG +G IK ++ T+TYI TP R EPVF VTG +V A++
Sbjct: 137 ITSYVRVPLRV-VGLVVGPKGATIKRIQQDTHTYIITPSREREPVFEVTGLPHNVEAARK 195
Query: 526 EI 531
EI
Sbjct: 196 EI 197
>AF003139-8|AAK73873.2| 443|Caenorhabditis elegans Muscle excess
protein 3, isoform b protein.
Length = 443
Score = 139 bits (337), Expect = 1e-33
Identities = 76/124 (61%), Positives = 90/124 (72%), Gaps = 1/124 (0%)
Frame = +1
Query: 208 EDQRAFKLALELSMLSLGDNLPASNPLGSPLGFAPPPDDRTKKS-QNMTECVPVPSSEHV 384
E+Q A+KL ++ + +P+ P A + RT QN+TE V VP+SEHV
Sbjct: 34 EEQIAYKLP---GAWYYEEDTASCSPVSDPEDIAQFLNYRTSIGVQNVTESVEVPTSEHV 90
Query: 385 AEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKREILSAAEHFSQIR 564
AEIVGRQGCKIKALRAKTNTYIKTPVRGE+P+FVVTGR EDV AKREI AAEHF+QIR
Sbjct: 91 AEIVGRQGCKIKALRAKTNTYIKTPVRGEDPIFVVTGRLEDVNEAKREIDCAAEHFTQIR 150
Query: 565 ASRK 576
ASR+
Sbjct: 151 ASRR 154
Score = 49.2 bits (112), Expect = 3e-06
Identities = 28/62 (45%), Positives = 37/62 (59%)
Frame = +1
Query: 346 MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRKEDVARAKR 525
+T V VP V +VG +G IK ++ T+TYI TP R EPVF VTG +V A++
Sbjct: 165 ITSYVRVPLRV-VGLVVGPKGATIKRIQQDTHTYIITPSREREPVFEVTGLPHNVEAARK 223
Query: 526 EI 531
EI
Sbjct: 224 EI 225
>Z54342-2|CAA91144.2| 1220|Caenorhabditis elegans Hypothetical
protein C08H9.2 protein.
Length = 1220
Score = 37.1 bits (82), Expect = 0.011
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 2/77 (2%)
Frame = +1
Query: 334 KSQNMTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRG--EEPVFVVTGRKED 507
K +N E E ++G+ G KI LR N + P G E+ + G+KED
Sbjct: 706 KEENYVEDTVKAKPEFHRFLIGKGGSKIAKLRDTLNVRVMFPKEGDAEKETIHLLGKKED 765
Query: 508 VARAKREILSAAEHFSQ 558
V +AK + A + S+
Sbjct: 766 VPKAKAALEDAIKQLSE 782
>U80444-7|AAO12447.1| 380|Caenorhabditis elegans Hypothetical
protein F26B1.2c protein.
Length = 380
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 370 SSEHVAEIVGRQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRKEDVARAKREILSAAE 546
SS+ I+G+ G IK LRA+ N +++ P E V VT ++ V +++L E
Sbjct: 40 SSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKDVLPRLE 99
Query: 547 -HFSQ 558
+FS+
Sbjct: 100 DNFSE 104
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 379 HVAEIVGRQGCKIKALRAKTNTYIK 453
H ++GR G KIK LR K + +K
Sbjct: 118 HAGALIGRNGSKIKELREKCSARLK 142
>U80444-5|AAB37791.1| 397|Caenorhabditis elegans Hypothetical
protein F26B1.2a protein.
Length = 397
Score = 33.5 bits (73), Expect = 0.14
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +1
Query: 370 SSEHVAEIVGRQGCKIKALRAKTNTYIKTP-VRGEEPVFVVTGRKEDVARAKREILSAAE 546
SS+ I+G+ G IK LRA+ N +++ P E V VT ++ V +++L E
Sbjct: 57 SSKSAGAIIGKGGENIKRLRAEFNAHVQVPDSNTPERVCTVTADEKTVLNILKDVLPRLE 116
Query: 547 -HFSQ 558
+FS+
Sbjct: 117 DNFSE 121
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +1
Query: 379 HVAEIVGRQGCKIKALRAKTNTYIK 453
H ++GR G KIK LR K + +K
Sbjct: 135 HAGALIGRNGSKIKELREKCSARLK 159
>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 62
protein.
Length = 1256
Score = 31.9 bits (69), Expect = 0.42
Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Frame = +1
Query: 310 PPPDDRTKKSQN--MTECVPVPSSEHVAEIVGRQGCKIKALRAKTNTYIKTPV 462
PPP++ + QN MTE +P S+EHV++ +Q + + + I+TPV
Sbjct: 613 PPPENSQLQFQNFGMTETIPQQSNEHVSQ-QQQQIAQSRPMNLNQQQVIETPV 664
>U41991-9|AAA83349.1| 297|Caenorhabditis elegans Hypothetical
protein C42D4.11 protein.
Length = 297
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 152 WEAILSIKERFPSRSLVLNKKIIDGVRSI 66
W+ S+ ER+PS+ + + IDGVR +
Sbjct: 180 WKTAYSLVERYPSQPKITERIWIDGVRKV 208
>U80444-6|AAO12449.1| 93|Caenorhabditis elegans Hypothetical
protein F26B1.2e protein.
Length = 93
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 370 SSEHVAEIVGRQGCKIKALRAKTNTYIKTP 459
SS+ I+G+ G IK LRA+ N +++ P
Sbjct: 57 SSKSAGAIIGKGGENIKRLRAEFNAHVQVP 86
>AL110500-12|CAB60432.1| 362|Caenorhabditis elegans Hypothetical
protein Y87G2A.11 protein.
Length = 362
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Frame = -2
Query: 425 KALILHPCRPTISATCSEDGT---GTHSV 348
+A+ HP + TI ATC+ D + GTHS+
Sbjct: 67 RAIAAHPTKSTILATCTADFSSLGGTHSI 95
>Z82083-2|CAB04970.1| 263|Caenorhabditis elegans Hypothetical
protein ZK1010.4 protein.
Length = 263
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Frame = -3
Query: 298 AGSPA-GCSPASCRPGSAC 245
A PA CSP+SC+PG +C
Sbjct: 33 AAPPAVSCSPSSCQPGYSC 51
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,992,693
Number of Sequences: 27780
Number of extensions: 219440
Number of successful extensions: 838
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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