Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28g05
         (196 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    24   2.4  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   5.6  
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    23   5.6  
SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomy...    23   7.4  
SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein S23|Schizosac...    23   7.4  

>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
 Frame = +1

Query: 82  CCFIIIYF-LFVLNVTPSNCCIRLVC 156
           C  I IY  +F L  TP  C  RLVC
Sbjct: 32  CLTINIYLKIFTLISTPDLCNCRLVC 57


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +3

Query: 57  KRNTDDLRVLFYYNLFSFRFECYTVELLY*ARMLVHTNNKEV 182
           KR+T+ L +L +       +E Y  +LL  A  +  +  KEV
Sbjct: 153 KRSTNRLSLLAFMRNQQLNYEAYETKLLEDASTIEKSLEKEV 194


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 7/9 (77%), Positives = 9/9 (100%)
 Frame = +1

Query: 82  CCFIIIYFL 108
           CCFIII+F+
Sbjct: 626 CCFIIIFFM 634


>SPAC23C11.02c |rps23||40S ribosomal protein S23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 4/24 (16%)
 Frame = -2

Query: 159 QAYEPNTAIRRC----NIQNEKKI 100
           +A +PN+AIR+C     I+N KK+
Sbjct: 58  EAKQPNSAIRKCVRVQLIKNGKKV 81


>SPBP4H10.13 |rps2302|rps23-2|40S ribosomal protein
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 143

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 4/24 (16%)
 Frame = -2

Query: 159 QAYEPNTAIRRC----NIQNEKKI 100
           +A +PN+AIR+C     I+N KK+
Sbjct: 58  EAKQPNSAIRKCVRVQLIKNGKKV 81


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 727,682
Number of Sequences: 5004
Number of extensions: 10671
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 44
effective length of database: 2,142,302
effective search space used: 42846040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)