Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28g05
         (196 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical ...    32   0.065
U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical pr...    28   0.80 
AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical...    27   1.4  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    26   3.2  
Z83233-3|CAB05762.1|   83|Caenorhabditis elegans Hypothetical pr...    25   7.4  
U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical pr...    25   7.4  
AL132865-3|CAB60603.1|  310|Caenorhabditis elegans Hypothetical ...    25   9.8  
AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical ...    25   9.8  

>AF078782-1|AAC26913.1|  361|Caenorhabditis elegans Hypothetical
           protein H34P18.1 protein.
          Length = 361

 Score = 31.9 bits (69), Expect = 0.065
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +1

Query: 4   FVLFIVIFSNN**EMYNL--KEIPTTSECCFIIIYFLFVLNVTPSNCCIRLVCLCIRTIK 177
           F+LF+ +  N   E  +L   ++   SEC F+ IYF+    + P   C+ ++ L    +K
Sbjct: 175 FILFMNVVKNTEEEGIHLDISDLSLFSECLFLKIYFIARNTIFPIAPCVLMLILSFTLLK 234

Query: 178 K 180
           K
Sbjct: 235 K 235


>U00036-9|AAK29852.1|  377|Caenorhabditis elegans Hypothetical
           protein R151.1 protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 0.80
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = +1

Query: 79  ECCFIIIYFLFVLNVTPSNCCIRLVCLCIRTIKKLLKKK 195
           E   ++I+ + V  ++P   C  +V LC+R  KK +KK+
Sbjct: 272 ESSILVIFLIVVACMSP--ICTMIVLLCLRRRKKEIKKR 308


>AF003141-13|AAK21490.1|  549|Caenorhabditis elegans Hypothetical
           protein W02D3.11a protein.
          Length = 549

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 36  LIRDVQFKRNTDDLRVLFY 92
           L+RD QF+R + D RV+FY
Sbjct: 501 LLRDHQFQRPSGDARVIFY 519


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 76  SECCFIIIYFLFVLNVTPSNCCIRL 150
           S C ++ I F+ +   TP+NCC  +
Sbjct: 172 SSCFYLCIKFVEIGTWTPANCCTNI 196


>Z83233-3|CAB05762.1|   83|Caenorhabditis elegans Hypothetical
           protein K06B4.3 protein.
          Length = 83

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 73  TSECCFIIIYFLFVLNVTPSNCCIRLVCLCI 165
           T+ECC  +  ++++L      CC    C C+
Sbjct: 31  TNECCIALEIWVYILMGVFIVCCCCCCCGCL 61


>U41034-2|AAA82379.1|  915|Caenorhabditis elegans Hypothetical
           protein M02D8.3 protein.
          Length = 915

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 69  DDLRVLFYYNLFSFRFECYTVEL 137
           ++L  L+   L S R ECY+V L
Sbjct: 797 EELEALYRLQLASLRLECYSVTL 819


>AL132865-3|CAB60603.1|  310|Caenorhabditis elegans Hypothetical
           protein Y62E10A.4 protein.
          Length = 310

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 70  TTSECCFIIIYFLFVLNVTPSNCCI 144
           T+++C  +  Y LF LN+  S C I
Sbjct: 77  TSTQCFLLSAYGLFALNMQSSLCLI 101


>AF125446-2|AAD12805.1|  379|Caenorhabditis elegans Hypothetical
           protein R05C11.2 protein.
          Length = 379

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 63  NTDDLRVLFYYNLFSFRF 116
           +TDDL++ +Y NL  F F
Sbjct: 342 DTDDLQIRYYQNLKKFMF 359


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,014,097
Number of Sequences: 27780
Number of extensions: 61646
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 44
effective length of database: 11,517,878
effective search space used: 230357560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)