Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28g04
(610 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha ... 134 4e-32
AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alph... 134 4e-32
U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha ... 113 7e-26
AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta... 113 7e-26
AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alph... 113 7e-26
AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alph... 97 7e-21
Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical pr... 34 0.069
AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alph... 34 0.069
Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical pr... 33 0.16
Z70205-1|CAA94117.2| 460|Caenorhabditis elegans Hypothetical pr... 30 1.1
AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin ... 29 2.0
AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin ... 29 2.0
X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogen... 29 3.4
U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin st... 29 3.4
AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ... 29 3.4
Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical pr... 28 4.5
AF036692-5|AAS47681.1| 319|Caenorhabditis elegans Serpentine re... 28 6.0
AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical ... 27 7.9
Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical p... 23 8.3
>U41992-1|AAA83354.2| 514|Caenorhabditis elegans Importin alpha
family protein 3 protein.
Length = 514
Score = 134 bits (325), Expect = 4e-32
Identities = 80/179 (44%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Frame = +1
Query: 76 MSGGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGAASQED 255
MS + YKN + +R EE V +RK KRE+ + KRRN+N T +
Sbjct: 1 MSSNRQAYYKN-NAKEQIGKEKRNEEVVSIRKDKREEAISKRRNIN---TQIEDDSETST 56
Query: 256 INISPSDC-ITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEF 432
P D + V A +P EQ+ A Q+ RK+LS + NPPID +I SGI+P ++
Sbjct: 57 TPPGPFDANLLRLTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQC 116
Query: 433 LTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWAL 609
L++ +P LQFEAAWALTNIASG+S QT+ VV+ GAV + + LLS NVCEQ+VWAL
Sbjct: 117 LSS-TDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWAL 174
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/76 (32%), Positives = 43/76 (56%)
Frame = +1
Query: 376 NPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLV 555
N I VI++ +V + L H + +Q A A+ NI +G+ QT++V+D G + +
Sbjct: 267 NEHIQMVIEAQVVTHLVPLL-GHVDVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMP 325
Query: 556 GLLSGSTENVCEQAVW 603
GLL+ E + ++AVW
Sbjct: 326 GLLAHYKEKINKEAVW 341
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 385 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIA-SGSSGQTRIVVDYGAVNVLVGL 561
+ V +GI+P I L PT Q EAAWA++N+ SG Q +V G + +
Sbjct: 354 VQDVFDAGIMPMIIHLLDRGDFPT-QKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAM 412
Query: 562 LSGSTENVCE 591
LS + + +
Sbjct: 413 LSCTDSQIIQ 422
>AF040995-1|AAB97171.1| 514|Caenorhabditis elegans importin alpha 3
protein.
Length = 514
Score = 134 bits (325), Expect = 4e-32
Identities = 80/179 (44%), Positives = 107/179 (59%), Gaps = 1/179 (0%)
Frame = +1
Query: 76 MSGGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGAASQED 255
MS + YKN + +R EE V +RK KRE+ + KRRN+N T +
Sbjct: 1 MSSNRQAYYKN-NAKEQIGKEKRNEEVVSIRKDKREEAISKRRNIN---TQIEDDSETST 56
Query: 256 INISPSDC-ITPDMVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEF 432
P D + V A +P EQ+ A Q+ RK+LS + NPPID +I SGI+P ++
Sbjct: 57 TPPGPFDANLLRLTVAAAQSSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQC 116
Query: 433 LTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWAL 609
L++ +P LQFEAAWALTNIASG+S QT+ VV+ GAV + + LLS NVCEQ+VWAL
Sbjct: 117 LSS-TDPNLQFEAAWALTNIASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWAL 174
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/76 (32%), Positives = 43/76 (56%)
Frame = +1
Query: 376 NPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLV 555
N I VI++ +V + L H + +Q A A+ NI +G+ QT++V+D G + +
Sbjct: 267 NEHIQMVIEAQVVTHLVPLL-GHVDVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMP 325
Query: 556 GLLSGSTENVCEQAVW 603
GLL+ E + ++AVW
Sbjct: 326 GLLAHYKEKINKEAVW 341
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 385 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIA-SGSSGQTRIVVDYGAVNVLVGL 561
+ V +GI+P I L PT Q EAAWA++N+ SG Q +V G + +
Sbjct: 354 VQDVFDAGIMPMIIHLLDRGDFPT-QKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAM 412
Query: 562 LSGSTENVCE 591
LS + + +
Sbjct: 413 LSCTDSQIIQ 422
>U80444-4|AAB37790.1| 531|Caenorhabditis elegans Importin alpha
family protein 2 protein.
Length = 531
Score = 113 bits (273), Expect = 7e-26
Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 6/182 (3%)
Frame = +1
Query: 82 GGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRN---VNLPGTNAAGAASQE 252
GG +YKN+ +ELRRRR E V++RKQK + KRRN V+ G + + E
Sbjct: 19 GGRLQQYKNL-TKHEELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPE 77
Query: 253 DINISPSDC-ITPDMVLAVYLDNPEEQ--VIATQKFRKLLSKEPNPPIDAVIQSGIVPKF 423
I+ S ++ D + A+ +NP E V + RK LSK NPPID VI G++
Sbjct: 78 KISHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQAL 137
Query: 424 IEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVW 603
++ L+ +N +Q+EAAWALTNI SGS+ QT V+ G L+ L + + EQA+W
Sbjct: 138 VQALSV-ENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALW 196
Query: 604 AL 609
A+
Sbjct: 197 AV 198
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +1
Query: 361 LSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGA 540
L+ P+ I+ +SG++P + F +N L A L N+A+G+ T+ V+D G+
Sbjct: 288 LTDGPDEQIELARESGVLPHVVAFFKEAEN--LVAPALRTLGNVATGNDSLTQAVIDLGS 345
Query: 541 VNVLVGLLSGS-TENVCEQAVW 603
++ ++ L+ + + ++ ++ W
Sbjct: 346 LDEILPLMEKTRSSSIVKECCW 367
Score = 35.5 bits (78), Expect = 0.030
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +1
Query: 385 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGL 561
I AV+ + ++P I L + + QFEA+WAL+N+A G G R VV NV+ L
Sbjct: 380 IQAVLDANLLPVLINVLKSGDHKC-QFEASWALSNLAQG--GTNRQVVAMLEDNVVPAL 435
Score = 34.3 bits (75), Expect = 0.069
Identities = 24/91 (26%), Positives = 43/91 (47%)
Frame = +1
Query: 292 MVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEA 471
+V A+ ++N Q A ++S I A +++G+ I L+ H++ + +A
Sbjct: 137 LVQALSVENERVQYEAAWALTNIVSGSTEQTI-AAVEAGVTIPLIH-LSVHQSAQISEQA 194
Query: 472 AWALTNIASGSSGQTRIVVDYGAVNVLVGLL 564
WA+ NIA SS V+ V L+ L+
Sbjct: 195 LWAVANIAGDSSQLRDYVIKCHGVEALMHLM 225
>AF326936-1|AAG49386.1| 531|Caenorhabditis elegans importin beta
binding domain proteinprotein.
Length = 531
Score = 113 bits (273), Expect = 7e-26
Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 6/182 (3%)
Frame = +1
Query: 82 GGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRN---VNLPGTNAAGAASQE 252
GG +YKN+ +ELRRRR E V++RKQK + KRRN V+ G + + E
Sbjct: 19 GGRLQQYKNL-TKHEELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPE 77
Query: 253 DINISPSDC-ITPDMVLAVYLDNPEEQ--VIATQKFRKLLSKEPNPPIDAVIQSGIVPKF 423
I+ S ++ D + A+ +NP E V + RK LSK NPPID VI G++
Sbjct: 78 KISHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQAL 137
Query: 424 IEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVW 603
++ L+ +N +Q+EAAWALTNI SGS+ QT V+ G L+ L + + EQA+W
Sbjct: 138 VQALSV-ENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALW 196
Query: 604 AL 609
A+
Sbjct: 197 AV 198
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +1
Query: 361 LSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGA 540
L+ P+ I+ +SG++P + F +N L A L N+A+G+ T+ V+D G+
Sbjct: 288 LTDGPDEQIELARESGVLPHVVAFFKEAEN--LVAPALRTLGNVATGNDSLTQAVIDLGS 345
Query: 541 VNVLVGLLSGS-TENVCEQAVW 603
++ ++ L+ + + ++ ++ W
Sbjct: 346 LDEILPLMEKTRSSSIVKECCW 367
Score = 35.5 bits (78), Expect = 0.030
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +1
Query: 385 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGL 561
I AV+ + ++P I L + + QFEA+WAL+N+A G G R VV NV+ L
Sbjct: 380 IQAVLDANLLPVLINVLKSGDHKC-QFEASWALSNLAQG--GTNRQVVAMLEDNVVPAL 435
Score = 34.3 bits (75), Expect = 0.069
Identities = 24/91 (26%), Positives = 43/91 (47%)
Frame = +1
Query: 292 MVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEA 471
+V A+ ++N Q A ++S I A +++G+ I L+ H++ + +A
Sbjct: 137 LVQALSVENERVQYEAAWALTNIVSGSTEQTI-AAVEAGVTIPLIH-LSVHQSAQISEQA 194
Query: 472 AWALTNIASGSSGQTRIVVDYGAVNVLVGLL 564
WA+ NIA SS V+ V L+ L+
Sbjct: 195 LWAVANIAGDSSQLRDYVIKCHGVEALMHLM 225
>AF040996-1|AAB97172.1| 531|Caenorhabditis elegans importin alpha 2
protein.
Length = 531
Score = 113 bits (273), Expect = 7e-26
Identities = 71/182 (39%), Positives = 102/182 (56%), Gaps = 6/182 (3%)
Frame = +1
Query: 82 GGHKHRYKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRN---VNLPGTNAAGAASQE 252
GG +YKN+ +ELRRRR E V++RKQK + KRRN V+ G + + E
Sbjct: 19 GGRLQQYKNL-TKHEELRRRRTECSVEIRKQKGADMMMKRRNIVDVDEGGNSESELEEPE 77
Query: 253 DINISPSDC-ITPDMVLAVYLDNPEEQ--VIATQKFRKLLSKEPNPPIDAVIQSGIVPKF 423
I+ S ++ D + A+ +NP E V + RK LSK NPPID VI G++
Sbjct: 78 KISHQQSSTRLSNDEIRAILSNNPSEDDMVRCFESLRKSLSKTKNPPIDEVIHCGLLQAL 137
Query: 424 IEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVW 603
++ L+ +N +Q+EAAWALTNI SGS+ QT V+ G L+ L + + EQA+W
Sbjct: 138 VQALSV-ENERVQYEAAWALTNIVSGSTEQTIAAVEAGVTIPLIHLSVHQSAQISEQALW 196
Query: 604 AL 609
A+
Sbjct: 197 AV 198
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Frame = +1
Query: 361 LSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGA 540
L+ P+ I+ +SG++P + F +N L A L N+A+G+ T+ V+D G+
Sbjct: 288 LTDGPDEQIELARESGVLPHVVAFFKEAEN--LVAPALRTLGNVATGNDSLTQAVIDLGS 345
Query: 541 VNVLVGLLSGS-TENVCEQAVW 603
++ ++ L+ + + ++ ++ W
Sbjct: 346 LDEILPLMEKTRSSSIVKECCW 367
Score = 35.5 bits (78), Expect = 0.030
Identities = 23/59 (38%), Positives = 33/59 (55%)
Frame = +1
Query: 385 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGL 561
I AV+ + ++P I L + + QFEA+WAL+N+A G G R VV NV+ L
Sbjct: 380 IQAVLDANLLPVLINVLKSGDHKC-QFEASWALSNLAQG--GTNRQVVAMLEDNVVPAL 435
Score = 34.3 bits (75), Expect = 0.069
Identities = 24/91 (26%), Positives = 43/91 (47%)
Frame = +1
Query: 292 MVLAVYLDNPEEQVIATQKFRKLLSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEA 471
+V A+ ++N Q A ++S I A +++G+ I L+ H++ + +A
Sbjct: 137 LVQALSVENERVQYEAAWALTNIVSGSTEQTI-AAVEAGVTIPLIH-LSVHQSAQISEQA 194
Query: 472 AWALTNIASGSSGQTRIVVDYGAVNVLVGLL 564
WA+ NIA SS V+ V L+ L+
Sbjct: 195 LWAVANIAGDSSQLRDYVIKCHGVEALMHLM 225
>AF005266-1|AAQ13407.1| 423|Caenorhabditis elegans importin alpha-3
subunit protein.
Length = 423
Score = 97.5 bits (232), Expect = 7e-21
Identities = 49/84 (58%), Positives = 64/84 (76%)
Frame = +1
Query: 358 LLSKEPNPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYG 537
+LS + NPPID +I SGI+P ++ L++ +P LQFEAAWALTNIASG+S QT+ VV+ G
Sbjct: 1 MLSTDRNPPIDDLIGSGILPVLVQCLSS-TDPNLQFEAAWALTNIASGTSEQTQAVVNAG 59
Query: 538 AVNVLVGLLSGSTENVCEQAVWAL 609
AV + + LLS NVCEQ+VWAL
Sbjct: 60 AVPLFLQLLSCGNLNVCEQSVWAL 83
Score = 46.8 bits (106), Expect = 1e-05
Identities = 25/76 (32%), Positives = 43/76 (56%)
Frame = +1
Query: 376 NPPIDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIASGSSGQTRIVVDYGAVNVLV 555
N I VI++ +V + L H + +Q A A+ NI +G+ QT++V+D G + +
Sbjct: 176 NEHIQMVIEAQVVTHLVPLL-GHVDVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMP 234
Query: 556 GLLSGSTENVCEQAVW 603
GLL+ E + ++AVW
Sbjct: 235 GLLAHYKEKINKEAVW 250
Score = 37.9 bits (84), Expect = 0.006
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 1/70 (1%)
Frame = +1
Query: 385 IDAVIQSGIVPKFIEFLTNHKNPTLQFEAAWALTNIA-SGSSGQTRIVVDYGAVNVLVGL 561
+ V +GI+P I L PT Q EAAWA++N+ SG Q +V G + +
Sbjct: 263 VQDVFDAGIMPMIIHLLDRGDFPT-QKEAAWAISNVTISGRPNQVEQMVKLGVLRPFCAM 321
Query: 562 LSGSTENVCE 591
LS + + +
Sbjct: 322 LSCTDSQIIQ 331
>Z74043-9|CAA98540.1| 524|Caenorhabditis elegans Hypothetical
protein T19B10.7 protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.069
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +1
Query: 100 YKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRNVNL 216
YK+ +E+RR+R E+ VQ+RK +R+++ + R + +
Sbjct: 16 YKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITV 54
>AF040997-1|AAB97173.1| 524|Caenorhabditis elegans importin alpha 1
protein.
Length = 524
Score = 34.3 bits (75), Expect = 0.069
Identities = 13/39 (33%), Positives = 26/39 (66%)
Frame = +1
Query: 100 YKNVGLSADELRRRREEEGVQLRKQKREQQLFKRRNVNL 216
YK+ +E+RR+R E+ VQ+RK +R+++ + R + +
Sbjct: 16 YKSNVRDQNEMRRKRREDEVQIRKNRRDEKFERNRQITV 54
>Z73908-4|CAA98127.2| 447|Caenorhabditis elegans Hypothetical
protein F53B2.5 protein.
Length = 447
Score = 33.1 bits (72), Expect = 0.16
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 460 QFEAAWALTNIASGSSGQTRIVVDYGAVNVLVGLLSGSTENVCEQAVWAL 609
+ A W +TN+ S T + V+ +++L+ L+ + Q VWA+
Sbjct: 58 EVNAVWIITNMCCISQEVTHLFVNSNCLDILIKLVRSQNARLSSQTVWAI 107
>Z70205-1|CAA94117.2| 460|Caenorhabditis elegans Hypothetical
protein C11H1.2 protein.
Length = 460
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Frame = +3
Query: 39 FFFSLRCSVFKYNVWR-----SQTSLQECWTEC 122
F FSL CS+F+ ++ TS Q+CWT C
Sbjct: 46 FTFSLSCSLFELIIFEIADILDPTSRQKCWTNC 78
>AC024137-2|AAK09075.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 3 protein.
Length = 1603
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +1
Query: 112 GLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA----ASQEDINISPSDC 279
G +DELR RR + G+Q+ ++ ++ + R NA + D + P D
Sbjct: 726 GKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDM 785
Query: 280 ITPDMVLAVYLDNPE 324
T D V+ Y+ N E
Sbjct: 786 ETIDNVVEKYVRNGE 800
>AC024137-1|AAK09074.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 4 protein.
Length = 1603
Score = 29.5 bits (63), Expect = 2.0
Identities = 21/75 (28%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +1
Query: 112 GLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA----ASQEDINISPSDC 279
G +DELR RR + G+Q+ ++ ++ + R NA + D + P D
Sbjct: 726 GKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDM 785
Query: 280 ITPDMVLAVYLDNPE 324
T D V+ Y+ N E
Sbjct: 786 ETIDNVVEKYVRNGE 800
>X03044-1|CAA26849.1| 1603|Caenorhabditis elegans put. vitellogenin
protein.
Length = 1603
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +1
Query: 112 GLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA----ASQEDINISPSDC 279
G +DELR RR + G+Q+ ++ ++ + R NA + D + P D
Sbjct: 726 GKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDM 785
Query: 280 ITPDMVLAVYLDNPE 324
T D ++ Y+ N E
Sbjct: 786 ETIDTLVEKYVRNGE 800
>U42835-3|AAA83587.1| 1603|Caenorhabditis elegans Vitellogenin
structural genes (yolk protein genes) protein 5 protein.
Length = 1603
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Frame = +1
Query: 112 GLSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGA----ASQEDINISPSDC 279
G +DELR RR + G+Q+ ++ ++ + R NA + D + P D
Sbjct: 726 GKQSDELRSRRVQSGIQMLQEIVKKMNIRPRVQQTDSQNAHAVFYLRYKEMDYIVLPIDM 785
Query: 280 ITPDMVLAVYLDNPE 324
T D ++ Y+ N E
Sbjct: 786 ETIDTLVEKYVRNGE 800
>AF047656-8|AAC05109.2| 340|Caenorhabditis elegans Ligand-gated ion
channel protein 5 protein.
Length = 340
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = +1
Query: 253 DINISPSDC-----ITPDMVLAVYLDNPEEQVIATQKF 351
D+N+ PSD ITP+ L + +D +E ++ +Q+F
Sbjct: 41 DVNVKPSDTLTTVTITPNTFLLLSMDQTQETILFSQEF 78
>Z35595-5|CAA84636.1| 952|Caenorhabditis elegans Hypothetical
protein C01G6.5 protein.
Length = 952
Score = 28.3 bits (60), Expect = 4.5
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = +1
Query: 103 KNVG-LSADELRRRREEEGVQLRKQKREQQLFKRRNVNLPGTNAAGAASQEDINISPSDC 279
KN G DEL RR+EE V + ++ E Q + R + + + A D IS S
Sbjct: 312 KNKGSFKVDELSRRKEELAVMM--EEEEPQTIEIRELLVSLSEKAQDVQSNDFTISASSA 369
Query: 280 IT 285
T
Sbjct: 370 FT 371
>AF036692-5|AAS47681.1| 319|Caenorhabditis elegans Serpentine
receptor, class x protein13 protein.
Length = 319
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Frame = -2
Query: 453 WILMVCQEFNKFWYNSRL--YNCINWRIRFLT*KLSELLCCYDLFF 322
W + C F FWY+ YN I+W F + ++ Y ++
Sbjct: 151 WFIAFCHIFPYFWYDKCFITYNPISWTWNFAPTECGHVISTYTDYY 196
>AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical
protein H28O16.1b protein.
Length = 146
Score = 27.5 bits (58), Expect = 7.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = -2
Query: 441 VCQEFNKFWYNSRLYNCINW 382
VC N +W R ++C NW
Sbjct: 123 VCARTNGYWSQGRRFSCANW 142
>Z19152-11|CAA79540.2| 1003|Caenorhabditis elegans Hypothetical
protein B0464.5a protein.
Length = 1003
Score = 23.4 bits (48), Expect(2) = 8.3
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +1
Query: 49 VYVVLFSNTMSGGHKHRYKNVGLSADELRRRR 144
++VVLF ++G +HR + + ++RRR
Sbjct: 1 MFVVLFCRWLNGFSQHRERLYKFEDEAVQRRR 32
Score = 22.2 bits (45), Expect(2) = 8.3
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +1
Query: 157 VQLRKQKREQQLFKRRNVNLPGTNAAGAASQEDINISPSDCITP-DMVLAVYLDN 318
V L Q R K+RN TN S ++IN S + T ++V A DN
Sbjct: 72 VDLVNQNRFYFFVKQRNKKENSTNEEEEISSQEINTSTQNEETEVNLVFASAEDN 126
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,444,585
Number of Sequences: 27780
Number of extensions: 234229
Number of successful extensions: 874
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 852
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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