Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28g01
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1404 - 29928792-29929040,29929147-29929551,29930130-299302... 147 8e-36
04_01_0042 + 473912-474058,474208-474349,474442-476264 137 7e-33
09_04_0548 - 18469636-18470037,18471164-18472705,18474052-184744... 135 4e-32
09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540 135 4e-32
08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201 134 5e-32
12_02_0522 - 19960092-19960595,19962737-19962880,19963042-199631... 123 2e-28
08_02_1073 - 24117834-24118037,24118122-24118211,24118299-241184... 121 5e-28
09_04_0497 - 18096299-18096496,18096586-18096675,18096809-180969... 108 5e-24
06_03_1273 + 28892774-28893946,28894964-28895104,28895277-288953... 30 2.0
01_06_1797 + 39941482-39941608,39942302-39942497,39942601-399428... 29 2.7
11_01_0655 + 5294905-5296083 29 4.7
11_01_0652 - 5278178-5278388,5279118-5279197,5279198-5279271,527... 29 4.7
04_03_1003 - 21631188-21631274,21631939-21632043,21632171-216322... 29 4.7
05_03_0100 + 8391700-8392390,8392531-8392812,8393767-8394317 28 6.2
04_03_0205 + 12649724-12650191,12651493-12652025,12652114-126522... 28 6.2
02_05_1011 + 33487670-33487958,33490794-33492100,33492541-334928... 28 6.2
08_01_0422 + 3737429-3738006,3738083-3738824 28 8.2
>06_03_1404 -
29928792-29929040,29929147-29929551,29930130-29930280,
29930363-29930501,29930578-29930743,29930826-29931041,
29931142-29931323,29931412-29931538,29931974-29932112,
29932227-29932353,29932501-29932612,29932704-29932784,
29933330-29933483,29933569-29933689,29934003-29934045,
29934356-29934460
Length = 838
Score = 147 bits (356), Expect = 8e-36
Identities = 80/147 (54%), Positives = 102/147 (69%), Gaps = 2/147 (1%)
Frame = +3
Query: 261 LGSSREGSRTDAEAVLREEEAISPDALSVAQMKELRDRAQNYTFQTEVNRMMKLIINSLY 440
+G G TD+E V RE E+IS K LR A+ + FQ EV+R+M +IINSLY
Sbjct: 74 IGGVPHGLSTDSEVVQREAESIS--------RKTLRSSAEKFEFQAEVSRLMDIIINSLY 125
Query: 441 RNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA--NPELSIRIKAEPDKRLLHIIDSGV 614
NK+IFLRELISN SDALDKIR ++LTD+ VL +L I+IK + +K++L I D G+
Sbjct: 126 SNKDIFLRELISNASDALDKIRFLALTDKEVLGEGDTAKLEIQIKLDKEKKILSIRDRGI 185
Query: 615 GMTRADLINNLGTIAKSGTADFLSKMQ 695
GMT+ DLI NLGTIAKSGT+ F+ KMQ
Sbjct: 186 GMTKEDLIKNLGTIAKSGTSAFVEKMQ 212
>04_01_0042 + 473912-474058,474208-474349,474442-476264
Length = 703
Score = 137 bits (332), Expect = 7e-33
Identities = 64/106 (60%), Positives = 82/106 (77%)
Frame = +3
Query: 378 QNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEANPELS 557
+ + FQ E+N+++ LIIN+ Y NKEIFLRELISN SDALDKIR SLTD+ L+A PEL
Sbjct: 13 ETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELF 72
Query: 558 IRIKAEPDKRLLHIIDSGVGMTRADLINNLGTIAKSGTADFLSKMQ 695
IR+ + L IIDSGVGMT++DL+NNLGTIA+SGT +F+ +Q
Sbjct: 73 IRLVPYKPSKTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEALQ 118
>09_04_0548 -
18469636-18470037,18471164-18472705,18474052-18474474,
18474874-18474999
Length = 830
Score = 135 bits (326), Expect = 4e-32
Identities = 63/110 (57%), Positives = 81/110 (73%)
Frame = +3
Query: 363 LRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 542
+ + + FQ E+N+++ LIIN+ Y NKEIFLRELISN SDALDKIR SLTD+ L+A
Sbjct: 1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 60
Query: 543 NPELSIRIKAEPDKRLLHIIDSGVGMTRADLINNLGTIAKSGTADFLSKM 692
PEL I I + L IIDSGVGMT++DL+NNLGTIA+SGT +F+ +
Sbjct: 61 QPELFIHIVPDKASNTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEAL 110
>09_04_0546 - 18460309-18461859,18462593-18463015,18463415-18463540
Length = 699
Score = 135 bits (326), Expect = 4e-32
Identities = 63/110 (57%), Positives = 81/110 (73%)
Frame = +3
Query: 363 LRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 542
+ + + FQ E+N+++ LIIN+ Y NKEIFLRELISN SDALDKIR SLTD+ L+A
Sbjct: 1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 60
Query: 543 NPELSIRIKAEPDKRLLHIIDSGVGMTRADLINNLGTIAKSGTADFLSKM 692
PEL I I + L IIDSGVGMT++DL+NNLGTIA+SGT +F+ +
Sbjct: 61 QPELFIHIVPDKASNTLSIIDSGVGMTKSDLVNNLGTIARSGTKEFMEAL 110
>08_02_1151 - 24712200-24713750,24714587-24715009,24716076-24716201
Length = 699
Score = 134 bits (325), Expect = 5e-32
Identities = 62/110 (56%), Positives = 81/110 (73%)
Frame = +3
Query: 363 LRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEA 542
+ + + FQ E+N+++ LIIN+ Y NKEIFLRELISN SDALDKIR SLTD+ L+A
Sbjct: 1 MASETETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDA 60
Query: 543 NPELSIRIKAEPDKRLLHIIDSGVGMTRADLINNLGTIAKSGTADFLSKM 692
PEL I I + L IIDSG+GMT++DL+NNLGTIA+SGT +F+ +
Sbjct: 61 QPELFIHIVPDKASNTLSIIDSGIGMTKSDLVNNLGTIARSGTKEFMEAL 110
>12_02_0522 -
19960092-19960595,19962737-19962880,19963042-19963131,
19963215-19963320,19963400-19963574,19963849-19963951,
19964382-19964636,19964726-19964803,19964908-19965000,
19965091-19965222,19965898-19966002,19966127-19966201,
19966284-19966340,19966419-19966532,19966613-19966756,
19966886-19966969,19967071-19967164,19967244-19967369,
19967507-19967580,19967672-19967875,19968234-19968388,
19968860-19968947,19969505-19969730,19970235-19970286,
19970766-19970958,19973221-19973314,19973744-19973788,
19974874-19974896
Length = 1210
Score = 123 bits (296), Expect = 2e-28
Identities = 62/142 (43%), Positives = 93/142 (65%), Gaps = 2/142 (1%)
Frame = +3
Query: 279 GSRTDAEAVLREEEAISPDALSVAQMKELRDR--AQNYTFQTEVNRMMKLIINSLYRNKE 452
G+ A LRE + S A + D + + +Q EVNR+M LI++SLY NKE
Sbjct: 318 GTDNAASLKLREGSLVGRRYESSAAAVDSSDTPPVEKHEYQAEVNRLMDLIVHSLYSNKE 377
Query: 453 IFLRELISNGSDALDKIRLMSLTDRGVLEANPELSIRIKAEPDKRLLHIIDSGVGMTRAD 632
+FLREL+SN SDALDK+R +S+TD +++ L IRI+ + + ++ I D+G+GMTR +
Sbjct: 378 VFLRELVSNASDALDKLRYLSVTDPDLIKDGAGLDIRIQTDKENGIITITDTGIGMTRQE 437
Query: 633 LINNLGTIAKSGTADFLSKMQD 698
L+++LGTIA SGTA FL +++
Sbjct: 438 LVDSLGTIASSGTAKFLKALKE 459
>08_02_1073 -
24117834-24118037,24118122-24118211,24118299-24118404,
24118477-24118648,24118737-24118839,24118927-24119181,
24119259-24119336,24119449-24119541,24119660-24119800,
24119882-24119986,24120135-24120212,24120297-24120341,
24120463-24120579,24120685-24120828,24120934-24121017,
24121139-24121232,24121322-24121447,24121585-24121658,
24121870-24122098,24123124-24123611,24123702-24123749,
24123841-24124077,24124368-24124404,24125011-24125018
Length = 1051
Score = 121 bits (292), Expect = 5e-28
Identities = 57/119 (47%), Positives = 85/119 (71%)
Frame = +3
Query: 342 SVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLT 521
+VA+ E + + +Q EV+R+M LI++SLY +KE+FLREL+SN SDALDK+R + +T
Sbjct: 330 AVAEKAEETAEEEKFEYQAEVSRLMDLIVHSLYSHKEVFLRELVSNASDALDKLRFLGVT 389
Query: 522 DRGVLEANPELSIRIKAEPDKRLLHIIDSGVGMTRADLINNLGTIAKSGTADFLSKMQD 698
D +L EL IRIK +PD + I D+G+GMT+ +L + LGTIA+SGT+ FL +++
Sbjct: 390 DSSLLADGGELEIRIKPDPDAGTITITDTGIGMTKDELKDCLGTIAQSGTSKFLKALKE 448
>09_04_0497 -
18096299-18096496,18096586-18096675,18096809-18096914,
18097005-18097179,18097263-18097365,18097458-18097712,
18097791-18097868,18097986-18098078,18098179-18098319,
18098406-18098510,18098658-18098738,18098825-18098866,
18098966-18099082,18099208-18099351,18099485-18099568,
18099683-18099803,18099863-18099988,18100106-18100179,
18100388-18100657
Length = 800
Score = 108 bits (259), Expect = 5e-24
Identities = 54/116 (46%), Positives = 81/116 (69%), Gaps = 9/116 (7%)
Frame = +3
Query: 378 QNYTFQTEVNRMMKLIINSLYRNKEIFLRELISNGSDALDKIRLMSLTDRGVLEANPELS 557
+ + +Q EV+R++ LI++SLY +KE+FLREL+SN SDALDK+R +S+TD VL EL
Sbjct: 83 EQFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRFLSVTDSSVLSDGGELE 142
Query: 558 IRIKAEPDKRLLHII---------DSGVGMTRADLINNLGTIAKSGTADFLSKMQD 698
IRIK +P+ + I D+G+GMT+ +L + LGTIA+SGT+ FL +++
Sbjct: 143 IRIKPDPEAGTITITRSHCFASYSDTGIGMTKDELKDCLGTIAQSGTSKFLKALKE 198
>06_03_1273 +
28892774-28893946,28894964-28895104,28895277-28895329,
28895852-28895966
Length = 493
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -3
Query: 632 VGARHADAGVDDVQQPLVGLGLDADAE 552
+G H DAG+ ++ P +GLGL+ + E
Sbjct: 336 LGFDHGDAGISALKDPKIGLGLNLNTE 362
>01_06_1797 +
39941482-39941608,39942302-39942497,39942601-39942828,
39943157-39943388,39943476-39943583,39943696-39943968,
39944261-39944545
Length = 482
Score = 29.5 bits (63), Expect = 2.7
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Frame = +3
Query: 342 SVAQMKELRDRAQNYTFQTEVNRMMKLIINSLYR--NKEIFLRELISNGSDALDKIRLMS 515
SV Q+K R R Q ++ + NSL+ +++ + ++L+ GS L ++
Sbjct: 383 SVPQVKGHRLRGGPQMIQLSLDGKRIYVTNSLFSRWDEQFYGQDLVKKGSHML---QIDV 439
Query: 516 LTDRGVLEANPELSIRIKAEPD 581
T++G L NP + AEP+
Sbjct: 440 DTEKGGLSINPNFFVDFGAEPE 461
>11_01_0655 + 5294905-5296083
Length = 392
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +3
Query: 516 LTDRGVLEANPELS-IRIKAEPDKRLLHIIDSGVGMTRADL 635
LT L+A+ +LS +R A+PD L + SGVG++RADL
Sbjct: 61 LTGAQALKASKKLSHLRSPAKPDAVLAVL--SGVGLSRADL 99
>11_01_0652 -
5278178-5278388,5279118-5279197,5279198-5279271,
5279721-5279787,5279972-5280034,5280288-5281442
Length = 549
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +3
Query: 516 LTDRGVLEANPELS-IRIKAEPDKRLLHIIDSGVGMTRADL 635
LT L+A+ +LS +R A+PD L + SGVG++RADL
Sbjct: 55 LTGAQALKASKKLSHLRSPAKPDAVLAVL--SGVGLSRADL 93
>04_03_1003 -
21631188-21631274,21631939-21632043,21632171-21632248,
21632337-21632411,21632908-21632994,21633091-21633158,
21633478-21633565,21633684-21633784,21633831-21633990,
21635088-21635246,21635351-21635527
Length = 394
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = -1
Query: 646 RLLMRSARVMPTPESMMCSSRLSGSALMRMLSSGFASSTPRSVSDIRRIL 497
RLL + A+ + S+MC + S SA ++SG A+ + DIR +L
Sbjct: 55 RLLPQEAKAAGSGRSVMCMASASASAASAAVASG-AAELKAAREDIRELL 103
>05_03_0100 + 8391700-8392390,8392531-8392812,8393767-8394317
Length = 507
Score = 28.3 bits (60), Expect = 6.2
Identities = 21/84 (25%), Positives = 38/84 (45%)
Frame = -3
Query: 668 AGLGDGAEVVDEVGARHADAGVDDVQQPLVGLGLDADAELRVRFQHAAVRQRHQTDLVQR 489
A GD V + + +++ D+ +P GL L + + ++H L+
Sbjct: 322 ANSGDEETVSEARESNNSEMHNDEESKPPKPAGLKKS--LVEKNDELSEERKHLAALLSL 379
Query: 488 I*TVRDQLAEEDLFISVERVDDEL 417
+ + D L + DLF +V V+DEL
Sbjct: 380 LVVICDNLVDADLFSNVTSVNDEL 403
>04_03_0205 +
12649724-12650191,12651493-12652025,12652114-12652239,
12652625-12652724,12652880-12652899,12653035-12653137,
12653213-12653351,12653448-12653662,12653772-12654320
Length = 750
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 531 VLEANPELSIRIKAEPDKRLL-HIIDSGVGMTRA 629
V+EA+P LSI+ KA + LL H D+G +T A
Sbjct: 88 VIEADPVLSIQEKARRRQELLGHAGDAGAAITEA 121
>02_05_1011 +
33487670-33487958,33490794-33492100,33492541-33492853,
33493190-33494247
Length = 988
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 120 TSKSRWMFLTPAMKHIWLFGLGVLLLSGW 206
TS S W+FL P +WL L +G+
Sbjct: 572 TSTSMWIFLQPLTTSLWLASLAFFCFTGF 600
>08_01_0422 + 3737429-3738006,3738083-3738824
Length = 439
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +3
Query: 537 EANPELSIRIKAEPDKRLLHIIDSGVGM 620
EA PEL +R+K E D R + D V +
Sbjct: 141 EAKPELHLRVKMEADPRYIFEFDDEVAL 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,930,784
Number of Sequences: 37544
Number of extensions: 277281
Number of successful extensions: 988
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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