Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28f22
(668 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0320 - 2524700-2524810,2525075-2525183,2525607-2525683,252... 186 2e-47
09_06_0204 - 21559024-21559287,21559445-21559567,21559665-215597... 40 0.001
01_05_0552 - 23173106-23173184,23173266-23173411,23173543-231740... 39 0.004
05_03_0001 - 7269231-7269436,7269536-7270100,7270600-7270821,727... 31 0.83
09_06_0032 + 20353789-20353963,20354240-20354340,20354426-203545... 30 1.5
03_05_0169 + 21474655-21474771,21474879-21474971,21475553-214756... 30 1.5
02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303 30 1.5
04_04_0371 + 24771687-24772081,24772139-24772535,24773394-247734... 30 1.9
07_01_0307 - 2194796-2199274 29 4.4
03_02_0131 - 5796564-5796605,5797188-5797421,5798415-5798717,579... 29 4.4
08_01_0463 - 4075037-4075316,4075997-4076151,4076818-4078861,408... 28 5.9
05_01_0334 - 2642998-2643063,2643125-2643169,2643552-2643617,264... 28 5.9
03_06_0676 - 35460281-35460648,35462097-35462382 28 5.9
04_01_0179 + 2021977-2024890,2025117-2025610 28 7.7
>05_01_0320 -
2524700-2524810,2525075-2525183,2525607-2525683,
2525795-2525873,2526058-2526147,2526779-2526903,
2527288-2527468,2527712-2527905,2528008-2528411,
2528519-2528605,2528802-2529582
Length = 745
Score = 186 bits (452), Expect = 2e-47
Identities = 95/189 (50%), Positives = 124/189 (65%), Gaps = 5/189 (2%)
Frame = +1
Query: 115 MKLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYM 294
MK ++GL V+FPY IYPEQ+AYM ELKRALDA+GH LLEMP+GTGKT +L+SLI +Y
Sbjct: 1 MKFDLEGLTVHFPYAAIYPEQHAYMGELKRALDARGHALLEMPTGTGKTSALISLITSYS 60
Query: 295 IQNPHHVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPD 474
+ +P +LIYC+RTV E+EK L EL+ LF + + +L + LSSRKNLC+HP
Sbjct: 61 LASPSRPLRLIYCTRTVHEMEKTLAELRLLFAHLPAAASR--SLLALGLSSRKNLCVHPQ 118
Query: 475 VSREREGKLVDGKCHALTASYIRDRHERD-SSVPICQFYEGFNREGK----ESMLPYGVY 639
S VD C LTAS++RDR D S P+C F+E F+R S +P GVY
Sbjct: 119 ASAAAARDSVDTACRRLTASWVRDRAASDPDSTPLCDFFESFDRAAAAGDLASYMPPGVY 178
Query: 640 TMDDMKQYG 666
T+ D++ G
Sbjct: 179 TLADLRALG 187
>09_06_0204 -
21559024-21559287,21559445-21559567,21559665-21559718,
21559800-21560721,21560803-21561212,21561284-21561408,
21561524-21561571,21561668-21561789,21562008-21562099,
21562242-21562429,21562582-21562696,21562780-21562863,
21562994-21563087,21563393-21563510,21563805-21563930,
21564002-21564074,21564209-21564296,21564674-21564744,
21564839-21564918,21565004-21565065,21565169-21565310,
21565410-21565510,21565600-21565644,21565725-21565789,
21566088-21566163,21566246-21566300,21566416-21566773
Length = 1366
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = +1
Query: 127 VDGLLVYFPYDYIYPEQYAYMLELKRALD-----AKGHGLLEMPSGTGKTISLLSLIVAY 291
V G+ V FPY Y Q A+M + LD + H LLE P+GTGK++SLL +A+
Sbjct: 27 VGGVPVEFPYKP-YGTQLAFMGRVIATLDRARRQGRSHALLESPTGTGKSLSLLCSALAW 85
Query: 292 MIQNP 306
P
Sbjct: 86 QRHYP 90
>01_05_0552 -
23173106-23173184,23173266-23173411,23173543-23174022,
23174106-23174161,23175538-23175637,23175708-23175765,
23176163-23176278,23176915-23176974,23177297-23177383,
23178250-23178341,23178409-23178587,23178946-23179087,
23179655-23179706,23180241-23180473,23180569-23180745,
23180882-23181044,23181242-23181392,23181493-23181574,
23182193-23182332,23182499-23183013
Length = 1035
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/68 (35%), Positives = 39/68 (57%)
Frame = +1
Query: 322 LIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKL 501
+IY SRT ++ +V++EL K+ +P + VL SR+ +CIH +VS+ R G+
Sbjct: 149 IIYASRTHSQLRQVIKEL--------KATSYRPKM--AVLGSREQMCIHEEVSKLR-GRQ 197
Query: 502 VDGKCHAL 525
+ CH L
Sbjct: 198 QNNACHYL 205
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 193 ELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
EL ++ + LLE P+GTGKT+ LL +A+
Sbjct: 63 ELAGSIRQGKNALLESPTGTGKTLCLLCSALAW 95
>05_03_0001 -
7269231-7269436,7269536-7270100,7270600-7270821,
7270913-7271155,7271227-7271481,7272017-7272370,
7273082-7273164,7273250-7273630,7273874-7274027
Length = 820
Score = 31.1 bits (67), Expect = 0.83
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 319 KLIYCSRTVPEIEKVLEELKNL-FNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREG 495
K+ + SRT ++ + + ELK F + L V L SRKNLCI+ DV +
Sbjct: 136 KVFFTSRTHSQLSQFVGELKKTEFGW---------RLRTVCLGSRKNLCINKDVLKLGSA 186
Query: 496 KLVDGKCHALTAS 534
++ +C L S
Sbjct: 187 NRINERCLELQKS 199
>09_06_0032 +
20353789-20353963,20354240-20354340,20354426-20354560,
20354633-20354714,20354829-20354896,20354984-20355073,
20355133-20355257,20355384-20355717,20355841-20355957,
20356058-20356485,20356564-20356813,20356944-20357194,
20357278-20357587
Length = 821
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +1
Query: 466 HPDVSREREGKLVDGKCHALTASYIRD-RHERD 561
H +S + + DG+ HA TAS +R+ RHERD
Sbjct: 696 HRRLSFIKNSLIADGELHATTASSLRNLRHERD 728
>03_05_0169 +
21474655-21474771,21474879-21474971,21475553-21475642,
21475728-21475811,21476088-21476252,21476995-21477182,
21477363-21477435,21477766-21477819,21478019-21478276,
21478891-21479097,21479293-21479396,21479809-21479953,
21480108-21480242,21480610-21480783
Length = 628
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/60 (26%), Positives = 33/60 (55%)
Frame = +1
Query: 196 LKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHVRKLIYCSRTVPEIEKVLEEL 375
+ +AL ++ LL P GTGKT +++ +I +Q K++ C+ + ++ ++E L
Sbjct: 187 ISKALRSRDVFLLHGPPGTGKTTTIIEII----LQEVKRGSKILACAASNIAVDNIVERL 242
>02_05_0330 - 27996080-27996757,27996836-27997366,27998124-27998303
Length = 462
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/67 (28%), Positives = 34/67 (50%)
Frame = +1
Query: 241 PSGTGKTISLLSLIVAYMIQNPHHVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKP 420
P GTGKT ++ +L+ A +++N + + C+ T + +V + NL G+
Sbjct: 293 PPGTGKTKTISTLLWAMLVKN----HRTLTCAPTNTAVVEVASRVLNLLEDPSAGSGKAC 348
Query: 421 NLTGVVL 441
L+ VVL
Sbjct: 349 FLSDVVL 355
>04_04_0371 + 24771687-24772081,24772139-24772535,24773394-24773435,
24773571-24774305,24775357-24775480,24775613-24776580,
24776917-24776925
Length = 889
Score = 29.9 bits (64), Expect = 1.9
Identities = 29/106 (27%), Positives = 44/106 (41%), Gaps = 3/106 (2%)
Frame = +1
Query: 337 RTVPEIEKVLEELKNLFNYYEKSQGEK-PNLTGVVLSSRKNLCIHPDVSREREGKLVDGK 513
R P I++ E+L L N+ + + P+ +G+ SS + HP + L D
Sbjct: 749 RNSPSIQQ--EDLDMLDNHEAEDKDHMHPSTSGMTDSSSGSASSHPTFKQNTRSALKDAA 806
Query: 514 CHALT--ASYIRDRHERDSSVPICQFYEGFNREGKESMLPYGVYTM 645
ALT A+Y D R +P +Y K LP G Y +
Sbjct: 807 SPALTVKATYNGDT-VRFKFLPSMGWYHLLEEIAKRFKLPTGAYQL 851
>07_01_0307 - 2194796-2199274
Length = 1492
Score = 28.7 bits (61), Expect = 4.4
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = +1
Query: 241 PSGTGKTISLLSLIVAYMIQNPHHVRKLIY-CSRTVPEIEKVLEELKNLFNYYE-KSQGE 414
P G GKT + + + +QN H + +++ C ++K++EE+K E + +G
Sbjct: 289 PGGIGKTTLIQHIYNSQQVQN--HFQIMVWTCVSQSFSVDKLIEEIKEKLPSVEGEKKGS 346
Query: 415 KPNLTGVVLSSRKNLCIHPDV 477
L L S++ L I D+
Sbjct: 347 AEELIVQRLKSKRFLFILDDI 367
>03_02_0131 -
5796564-5796605,5797188-5797421,5798415-5798717,
5799260-5799847,5800594-5800749,5800861-5800919,
5801935-5802262
Length = 569
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 195 VKTCIGR*GTWIVRDAFRNRKNHIAPVFNRSLYDTEPSSCQKVNLLLSYSARNRKSVRRT 374
V+TC G W++ FR N PV RSL E + +N + +A + ++R T
Sbjct: 414 VETCRGE-DNWVMSKRFRTYFNFSHPVIARSLDPDECAWAYGMN-IFDLAAWRKTNIRET 471
Query: 375 KEF 383
F
Sbjct: 472 YHF 474
>08_01_0463 -
4075037-4075316,4075997-4076151,4076818-4078861,
4080757-4081589
Length = 1103
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Frame = +1
Query: 190 LELKRALDAKGHGLLEMPSGTGKTISLLSL-------IVAYMIQNPHHVRKLIYCSRTVP 348
L+ + LD G G+ E+P G LLSL + A I ++++ C +
Sbjct: 641 LKFLQVLDLSGTGIQELPESVGLLTKLLSLRANEGTRVSAGSIVKLTSLQEMWICPADIS 700
Query: 349 EIEKVLEELKNL 384
+ KVL +L+ L
Sbjct: 701 QFVKVLGKLREL 712
>05_01_0334 -
2642998-2643063,2643125-2643169,2643552-2643617,
2643625-2643730,2643770-2644349,2645780-2645871,
2645969-2646035,2646126-2646231,2646628-2646708,
2646789-2647058,2647158-2648788,2648834-2649385,
2650602-2651324,2651451-2651526
Length = 1486
Score = 28.3 bits (60), Expect = 5.9
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Frame = +1
Query: 409 GEKPNLTGVVLSSRKNLCIHPDVSREREGKLV----DGKCHALTASYIRDRHERDS 564
G + G + KNL + D S + EG V + KC ALT + ++ E+DS
Sbjct: 237 GSNTRVKGALEDYTKNL-VDSDASTDEEGDTVCEASEQKCEALTVNSLQQGKEQDS 291
>03_06_0676 - 35460281-35460648,35462097-35462382
Length = 217
Score = 28.3 bits (60), Expect = 5.9
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Frame = +1
Query: 274 SLIVAYMIQNPHH-VRKLIYCSRTV----PEIEKVLEELKNLFNYYEKSQGEKPNLTGVV 438
+L +A++I HH +RKLI + E+EK+ E + EKS E L +
Sbjct: 98 TLFLAFVIDRLHHYLRKLITLRKAANTSREEVEKLQMENRLFREKEEKSSSEIKKLHQEI 157
Query: 439 LSSRKNLCIHPDVSREREGKLVDGKCH 519
+++ S + E K+++ + H
Sbjct: 158 AKLNESMKKLKSESEDHERKVLEAEAH 184
>04_01_0179 + 2021977-2024890,2025117-2025610
Length = 1135
Score = 27.9 bits (59), Expect = 7.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = +1
Query: 154 YDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGK 258
Y YI PE Y YM+++ D +G++ + TGK
Sbjct: 966 YGYIAPE-YGYMMKITEKSDVYSYGVVVLEVLTGK 999
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,861,670
Number of Sequences: 37544
Number of extensions: 309558
Number of successful extensions: 794
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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