Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28f22
         (668 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    27   0.71 
AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    23   8.7  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    23   8.7  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 26.6 bits (56), Expect = 0.71
 Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
 Frame = +1

Query: 169 PEQYAYMLELKRALDAKGHGLLEMPSGTGKTIS-----LLSLIVAYMIQ 300
           PE+Y   +  +R L+A G G  ++ +  G+T+S     L  +++A+ IQ
Sbjct: 171 PERYGGRIICERTLNASGGGSYKLKNEHGQTVSTSRAELQKILLAFNIQ 219


>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 301 NPHHVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGE 414
           NP  +      S   PE+++  EELK   +  EKS  +
Sbjct: 149 NPRELLLNTQSSVCTPEVQQWFEELKEKRSLQEKSTNQ 186


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +1

Query: 334 SRTVPEIEKVLEELKNLFNYYEKSQGE 414
           SR + +++   +E++   NY ++ QGE
Sbjct: 769 SREIEQMQIRAQEIQTQINYLQEQQGE 795


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,872
Number of Sequences: 2352
Number of extensions: 12752
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66904800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)