Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28f22
(668 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X52221-1|CAA36463.1| 730|Homo sapiens ercc2 gene product protein. 272 6e-73
L47234-1|AAL48323.1| 760|Homo sapiens ERCC2 protein. 272 6e-73
BC110523-1|AAI10524.1| 760|Homo sapiens excision repair cross-c... 272 6e-73
BC108255-1|AAI08256.1| 760|Homo sapiens excision repair cross-c... 272 6e-73
BT006883-1|AAP35529.1| 405|Homo sapiens excision repair cross-c... 224 3e-58
AY092780-1|AAM45142.1| 736|Homo sapiens excision repair cross-c... 224 3e-58
BC110522-1|AAI10523.1| 682|Homo sapiens ERCC2 protein protein. 197 3e-50
BC101474-1|AAI01475.1| 1249|Homo sapiens BRCA1 interacting prote... 54 5e-07
BC101472-1|AAI01473.1| 1249|Homo sapiens BRCA1 interacting prote... 54 5e-07
AF360549-1|AAK38111.1| 1249|Homo sapiens BRCA1-binding helicase-... 54 5e-07
AL353715-6|CAM25346.1| 1300|Homo sapiens regulator of telomere e... 46 1e-04
AL353715-5|CAC16223.1| 1219|Homo sapiens regulator of telomere e... 46 1e-04
AL353715-4|CAM25345.1| 356|Homo sapiens regulator of telomere e... 46 1e-04
AF217796-2|AAF35243.1| 1400|Homo sapiens helicase-like protein N... 46 1e-04
AF217795-1|AAF33687.1| 1219|Homo sapiens helicase-like protein N... 46 1e-04
AB029011-1|BAA83040.2| 1400|Homo sapiens KIAA1088 protein protein. 46 1e-04
U75968-1|AAB18750.1| 288|Homo sapiens CHL1 protein protein. 41 0.003
U75967-1|AAB18749.1| 906|Homo sapiens CHL1 potential helicase p... 41 0.003
U33833-1|AAB06962.1| 906|Homo sapiens helicase protein. 41 0.003
BC111733-1|AAI11734.1| 906|Homo sapiens DDX11 protein protein. 41 0.003
BC050522-1|AAH50522.1| 970|Homo sapiens DDX11 protein protein. 41 0.003
X99583-1|CAA67895.1| 680|Homo sapiens CHL1 protein protein. 40 0.006
BC050069-1|AAH50069.1| 880|Homo sapiens DDX11 protein protein. 40 0.006
U33834-1|AAB06963.1| 734|Homo sapiens helicase protein. 38 0.025
BC150258-1|AAI50259.1| 1634|Homo sapiens CENTD1 protein protein. 30 6.5
AY422473-1|AAR13704.1| 1326|Homo sapiens myosin tail domain-cont... 30 6.5
AY049733-1|AAL12170.1| 1704|Homo sapiens ARAP2 protein. 30 6.5
AL662788-1|CAI95333.1| 1326|Homo sapiens chromosome 9 open readi... 30 6.5
AL592153-1|CAI95316.1| 1326|Homo sapiens chromosome 9 open readi... 30 6.5
AL359877-3|CAI94977.1| 1326|Homo sapiens chromosome 9 open readi... 30 6.5
AF439781-1|AAL32459.1| 1704|Homo sapiens PARX protein protein. 30 6.5
AB011152-1|BAA25506.2| 1631|Homo sapiens KIAA0580 protein protein. 30 6.5
BC035819-1|AAH35819.1| 212|Homo sapiens SYCE2 protein protein. 30 8.6
>X52221-1|CAA36463.1| 730|Homo sapiens ercc2 gene product protein.
Length = 730
Score = 272 bits (668), Expect = 6e-73
Identities = 124/184 (67%), Positives = 150/184 (81%)
Frame = +1
Query: 115 MKLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYM 294
MKL VDGLLVYFPYDYIYPEQ++YM ELKR LDAKGHG+LEMPSGTGKT+SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 295 IQNPHHVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPD 474
P V KLIYCSRTVPEIEKV+EEL+ L N+YEK +GEK G+ LSSRKNLCIHP+
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 475 VSREREGKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNREGKESMLPYGVYTMDDM 654
V+ R GK VDGKCH+LTASY+R +++ D+S+P C+FYE F+ G+E LP G+Y +DD+
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 655 KQYG 666
K G
Sbjct: 181 KALG 184
>L47234-1|AAL48323.1| 760|Homo sapiens ERCC2 protein.
Length = 760
Score = 272 bits (668), Expect = 6e-73
Identities = 124/184 (67%), Positives = 150/184 (81%)
Frame = +1
Query: 115 MKLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYM 294
MKL VDGLLVYFPYDYIYPEQ++YM ELKR LDAKGHG+LEMPSGTGKT+SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 295 IQNPHHVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPD 474
P V KLIYCSRTVPEIEKV+EEL+ L N+YEK +GEK G+ LSSRKNLCIHP+
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 475 VSREREGKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNREGKESMLPYGVYTMDDM 654
V+ R GK VDGKCH+LTASY+R +++ D+S+P C+FYE F+ G+E LP G+Y +DD+
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 655 KQYG 666
K G
Sbjct: 181 KALG 184
>BC110523-1|AAI10524.1| 760|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 760
Score = 272 bits (668), Expect = 6e-73
Identities = 124/184 (67%), Positives = 150/184 (81%)
Frame = +1
Query: 115 MKLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYM 294
MKL VDGLLVYFPYDYIYPEQ++YM ELKR LDAKGHG+LEMPSGTGKT+SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 295 IQNPHHVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPD 474
P V KLIYCSRTVPEIEKV+EEL+ L N+YEK +GEK G+ LSSRKNLCIHP+
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 475 VSREREGKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNREGKESMLPYGVYTMDDM 654
V+ R GK VDGKCH+LTASY+R +++ D+S+P C+FYE F+ G+E LP G+Y +DD+
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 655 KQYG 666
K G
Sbjct: 181 KALG 184
>BC108255-1|AAI08256.1| 760|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 760
Score = 272 bits (668), Expect = 6e-73
Identities = 124/184 (67%), Positives = 150/184 (81%)
Frame = +1
Query: 115 MKLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYM 294
MKL VDGLLVYFPYDYIYPEQ++YM ELKR LDAKGHG+LEMPSGTGKT+SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 295 IQNPHHVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPD 474
P V KLIYCSRTVPEIEKV+EEL+ L N+YEK +GEK G+ LSSRKNLCIHP+
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 475 VSREREGKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNREGKESMLPYGVYTMDDM 654
V+ R GK VDGKCH+LTASY+R +++ D+S+P C+FYE F+ G+E LP G+Y +DD+
Sbjct: 121 VTPLRFGKDVDGKCHSLTASYVRAQYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDL 180
Query: 655 KQYG 666
K G
Sbjct: 181 KALG 184
>BT006883-1|AAP35529.1| 405|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 405
Score = 224 bits (547), Expect = 3e-58
Identities = 103/160 (64%), Positives = 127/160 (79%)
Frame = +1
Query: 187 MLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHVRKLIYCSRTVPEIEKVL 366
M ELKR LDAKGHG+LEMPSGTGKT+SLL+LI+AY P V KLIYCSRTVPEIEKV+
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 367 EELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVDGKCHALTASYIRD 546
EEL+ L N+YEK +GEK G+ LSSRKNLCIHP+V+ R GK VDGKCH+LTASY+R
Sbjct: 61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120
Query: 547 RHERDSSVPICQFYEGFNREGKESMLPYGVYTMDDMKQYG 666
+++ D+S+P C+FYE F+ G+E LP G+Y +DD+K G
Sbjct: 121 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALG 160
>AY092780-1|AAM45142.1| 736|Homo sapiens excision repair
cross-complementing rodent repair deficiency,
complementation g protein.
Length = 736
Score = 224 bits (547), Expect = 3e-58
Identities = 103/160 (64%), Positives = 127/160 (79%)
Frame = +1
Query: 187 MLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHVRKLIYCSRTVPEIEKVL 366
M ELKR LDAKGHG+LEMPSGTGKT+SLL+LI+AY P V KLIYCSRTVPEIEKV+
Sbjct: 1 MRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQRAYPLEVTKLIYCSRTVPEIEKVI 60
Query: 367 EELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVDGKCHALTASYIRD 546
EEL+ L N+YEK +GEK G+ LSSRKNLCIHP+V+ R GK VDGKCH+LTASY+R
Sbjct: 61 EELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPEVTPLRFGKDVDGKCHSLTASYVRA 120
Query: 547 RHERDSSVPICQFYEGFNREGKESMLPYGVYTMDDMKQYG 666
+++ D+S+P C+FYE F+ G+E LP G+Y +DD+K G
Sbjct: 121 QYQHDTSLPHCRFYEEFDAHGREVPLPAGIYNLDDLKALG 160
>BC110522-1|AAI10523.1| 682|Homo sapiens ERCC2 protein protein.
Length = 682
Score = 197 bits (481), Expect = 3e-50
Identities = 90/121 (74%), Positives = 103/121 (85%)
Frame = +1
Query: 115 MKLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYM 294
MKL VDGLLVYFPYDYIYPEQ++YM ELKR LDAKGHG+LEMPSGTGKT+SLL+LI+AY
Sbjct: 1 MKLNVDGLLVYFPYDYIYPEQFSYMRELKRTLDAKGHGVLEMPSGTGKTVSLLALIMAYQ 60
Query: 295 IQNPHHVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPD 474
P V KLIYCSRTVPEIEKV+EEL+ L N+YEK +GEK G+ LSSRKNLCIHP+
Sbjct: 61 RAYPLEVTKLIYCSRTVPEIEKVIEELRKLLNFYEKQEGEKLPFLGLALSSRKNLCIHPE 120
Query: 475 V 477
+
Sbjct: 121 I 121
>BC101474-1|AAI01475.1| 1249|Homo sapiens BRCA1 interacting protein
C-terminal helicase 1 protein.
Length = 1249
Score = 54.0 bits (124), Expect = 5e-07
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = +1
Query: 124 TVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
T+ G+ +YFPY YP Q A M + R L++K H LLE P+G+GK+++LL +A+
Sbjct: 9 TIGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAW 63
>BC101472-1|AAI01473.1| 1249|Homo sapiens BRCA1 interacting protein
C-terminal helicase 1 protein.
Length = 1249
Score = 54.0 bits (124), Expect = 5e-07
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = +1
Query: 124 TVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
T+ G+ +YFPY YP Q A M + R L++K H LLE P+G+GK+++LL +A+
Sbjct: 9 TIGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAW 63
>AF360549-1|AAK38111.1| 1249|Homo sapiens BRCA1-binding
helicase-like protein BACH1 protein.
Length = 1249
Score = 54.0 bits (124), Expect = 5e-07
Identities = 25/56 (44%), Positives = 38/56 (67%)
Frame = +1
Query: 124 TVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
T+ G+ +YFPY YP Q A M + R L++K H LLE P+G+GK+++LL +A+
Sbjct: 9 TIGGVKIYFPYK-AYPSQLAMMNSILRGLNSKQHCLLESPTGSGKSLALLCSALAW 63
>AL353715-6|CAM25346.1| 1300|Homo sapiens regulator of telomere
elongation helicase 1 protein.
Length = 1300
Score = 46.0 bits (104), Expect = 1e-04
Identities = 23/58 (39%), Positives = 36/58 (62%)
Frame = +1
Query: 118 KLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
K+ ++G+ V FP+ Y Q YM ++ L K +G+LE P+GTGKT+ LL +A+
Sbjct: 3 KIVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAW 59
Score = 41.5 bits (93), Expect = 0.003
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +1
Query: 313 VRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRERE 492
+ K+IY SRT ++ +V+ EL+N +Y +P + VL SR+ LCIHP+V ++
Sbjct: 106 IPKIIYASRTHSQLTQVINELRNT-SY-------RPKVC--VLGSREQLCIHPEVKKQES 155
Query: 493 GKLVDGKCHALTAS 534
L C AS
Sbjct: 156 NHLQIHLCRKKVAS 169
>AL353715-5|CAC16223.1| 1219|Homo sapiens regulator of telomere
elongation helicase 1 protein.
Length = 1219
Score = 46.0 bits (104), Expect = 1e-04
Identities = 23/58 (39%), Positives = 36/58 (62%)
Frame = +1
Query: 118 KLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
K+ ++G+ V FP+ Y Q YM ++ L K +G+LE P+GTGKT+ LL +A+
Sbjct: 3 KIVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAW 59
Score = 41.5 bits (93), Expect = 0.003
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +1
Query: 313 VRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRERE 492
+ K+IY SRT ++ +V+ EL+N +Y +P + VL SR+ LCIHP+V ++
Sbjct: 106 IPKIIYASRTHSQLTQVINELRNT-SY-------RPKVC--VLGSREQLCIHPEVKKQES 155
Query: 493 GKLVDGKCHALTAS 534
L C AS
Sbjct: 156 NHLQIHLCRKKVAS 169
>AL353715-4|CAM25345.1| 356|Homo sapiens regulator of telomere
elongation helicase 1 protein.
Length = 356
Score = 46.0 bits (104), Expect = 1e-04
Identities = 23/58 (39%), Positives = 36/58 (62%)
Frame = +1
Query: 118 KLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
K+ ++G+ V FP+ Y Q YM ++ L K +G+LE P+GTGKT+ LL +A+
Sbjct: 3 KIVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAW 59
Score = 31.5 bits (68), Expect = 2.8
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +1
Query: 436 VLSSRKNLCIHPDVSREREGKLVDGKCHALTAS 534
VL SR+ LCIHP+V ++ L C AS
Sbjct: 187 VLGSREQLCIHPEVKKQESNHLQIHLCRKKVAS 219
Score = 30.7 bits (66), Expect = 4.9
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = +1
Query: 313 VRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSS--RKNLCIHPDVSRE 486
+ K+IY SRT ++ +V+ EL+N +Y +P V+L+S R+ C+ P SR
Sbjct: 106 IPKIIYASRTHSQLTQVINELRNT-SYRSLL---RPGHVSVMLTSSDRRGSCVSPYSSRC 161
Query: 487 R 489
R
Sbjct: 162 R 162
>AF217796-2|AAF35243.1| 1400|Homo sapiens helicase-like protein NHL
protein.
Length = 1400
Score = 46.0 bits (104), Expect = 1e-04
Identities = 23/58 (39%), Positives = 36/58 (62%)
Frame = +1
Query: 118 KLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
K+ ++G+ V FP+ Y Q YM ++ L K +G+LE P+GTGKT+ LL +A+
Sbjct: 3 KIVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAW 59
Score = 41.5 bits (93), Expect = 0.003
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +1
Query: 313 VRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRERE 492
+ K+IY SRT ++ +V+ EL+N +Y +P + VL SR+ LCIHP+V ++
Sbjct: 106 IPKIIYASRTHSQLTQVINELRNT-SY-------RPKVC--VLGSREQLCIHPEVKKQES 155
Query: 493 GKLVDGKCHALTAS 534
L C AS
Sbjct: 156 NHLQIHLCRKKVAS 169
>AF217795-1|AAF33687.1| 1219|Homo sapiens helicase-like protein NHL
protein.
Length = 1219
Score = 46.0 bits (104), Expect = 1e-04
Identities = 23/58 (39%), Positives = 36/58 (62%)
Frame = +1
Query: 118 KLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
K+ ++G+ V FP+ Y Q YM ++ L K +G+LE P+GTGKT+ LL +A+
Sbjct: 3 KIVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAW 59
Score = 41.5 bits (93), Expect = 0.003
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +1
Query: 313 VRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRERE 492
+ K+IY SRT ++ +V+ EL+N +Y +P + VL SR+ LCIHP+V ++
Sbjct: 106 IPKIIYASRTHSQLTQVINELRNT-SY-------RPKVC--VLGSREQLCIHPEVKKQES 155
Query: 493 GKLVDGKCHALTAS 534
L C AS
Sbjct: 156 NHLQIHLCRKKVAS 169
>AB029011-1|BAA83040.2| 1400|Homo sapiens KIAA1088 protein protein.
Length = 1400
Score = 46.0 bits (104), Expect = 1e-04
Identities = 23/58 (39%), Positives = 36/58 (62%)
Frame = +1
Query: 118 KLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
K+ ++G+ V FP+ Y Q YM ++ L K +G+LE P+GTGKT+ LL +A+
Sbjct: 3 KIVLNGVTVDFPFQP-YKCQQEYMTKVLECLQQKVNGILESPTGTGKTLCLLCTTLAW 59
Score = 41.5 bits (93), Expect = 0.003
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +1
Query: 313 VRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRERE 492
+ K+IY SRT ++ +V+ EL+N +Y +P + VL SR+ LCIHP+V ++
Sbjct: 106 IPKIIYASRTHSQLTQVINELRNT-SY-------RPKVC--VLGSREQLCIHPEVKKQES 155
Query: 493 GKLVDGKCHALTAS 534
L C AS
Sbjct: 156 NHLQIHLCRKKVAS 169
>U75968-1|AAB18750.1| 288|Homo sapiens CHL1 protein protein.
Length = 288
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +1
Query: 142 VYFPYDYI-YPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLL 273
++FP+ + Y Q +M EL R L+A G+ E P+GTGK++SL+
Sbjct: 11 IHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLI 55
>U75967-1|AAB18749.1| 906|Homo sapiens CHL1 potential helicase
protein.
Length = 906
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +1
Query: 142 VYFPYDYI-YPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLL 273
++FP+ + Y Q +M EL R L+A G+ E P+GTGK++SL+
Sbjct: 11 IHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLI 55
Score = 40.3 bits (90), Expect = 0.006
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +1
Query: 310 HVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRER 489
H+ K+ YCSRT ++ + + E+K KS K ++ V L SR+NLC++ DV
Sbjct: 225 HITKIYYCSRTHSQLAQFVHEVK-------KSPFGK-DVRLVSLGSRQNLCVNEDVKSLG 276
Query: 490 EGKLVDGKCHALTASYIRDRHER 558
+L++ +C R RHE+
Sbjct: 277 SVQLINDRC----VDMQRSRHEK 295
>U33833-1|AAB06962.1| 906|Homo sapiens helicase protein.
Length = 906
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +1
Query: 142 VYFPYDYI-YPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLL 273
++FP+ + Y Q +M EL R L+A G+ E P+GTGK++SL+
Sbjct: 11 IHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLI 55
Score = 40.3 bits (90), Expect = 0.006
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +1
Query: 310 HVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRER 489
H+ K+ YCSRT ++ + + E+K KS K ++ V L SR+NLC++ DV
Sbjct: 225 HITKIYYCSRTHSQLAQFVHEVK-------KSPFGK-DVRLVSLGSRQNLCVNEDVKSLG 276
Query: 490 EGKLVDGKCHALTASYIRDRHER 558
+L++ +C R RHE+
Sbjct: 277 SVQLINDRC----VDMQRSRHEK 295
>BC111733-1|AAI11734.1| 906|Homo sapiens DDX11 protein protein.
Length = 906
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +1
Query: 142 VYFPYDYI-YPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLL 273
++FP+ + Y Q +M EL R L+A G+ E P+GTGK++SL+
Sbjct: 11 IHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLI 55
Score = 40.3 bits (90), Expect = 0.006
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +1
Query: 310 HVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRER 489
H+ K+ YCSRT ++ + + E+K KS K ++ V L SR+NLC++ DV
Sbjct: 225 HITKIYYCSRTHSQLAQFVHEVK-------KSPFGK-DVRLVSLGSRQNLCVNEDVKSLG 276
Query: 490 EGKLVDGKCHALTASYIRDRHER 558
+L++ +C R RHE+
Sbjct: 277 SVQLINDRC----VDMQRSRHEK 295
>BC050522-1|AAH50522.1| 970|Homo sapiens DDX11 protein protein.
Length = 970
Score = 41.1 bits (92), Expect = 0.003
Identities = 19/45 (42%), Positives = 30/45 (66%), Gaps = 1/45 (2%)
Frame = +1
Query: 142 VYFPYDYI-YPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLL 273
++FP+ + Y Q +M EL R L+A G+ E P+GTGK++SL+
Sbjct: 11 IHFPFPFTPYSIQEDFMAELYRVLEAGKIGIFESPTGTGKSLSLI 55
Score = 40.3 bits (90), Expect = 0.006
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +1
Query: 310 HVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRER 489
H+ K+ YCSRT ++ + + E+K KS K ++ V L SR+NLC++ DV
Sbjct: 225 HITKIYYCSRTHSQLAQFVHEVK-------KSPFGK-DVRLVSLGSRQNLCVNEDVKSLG 276
Query: 490 EGKLVDGKCHALTASYIRDRHER 558
+L++ +C R RHE+
Sbjct: 277 SVQLINDRC----VDMQRSRHEK 295
>X99583-1|CAA67895.1| 680|Homo sapiens CHL1 protein protein.
Length = 680
Score = 40.3 bits (90), Expect = 0.006
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +1
Query: 310 HVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRER 489
H+ K+ YCSRT ++ + + E+K KS K ++ V L SR+NLC++ DV
Sbjct: 49 HITKIYYCSRTHSQLAQFVHEVK-------KSPFGK-DVRLVSLGSRQNLCVNEDVKSLG 100
Query: 490 EGKLVDGKCHALTASYIRDRHER 558
+L++ +C R RHE+
Sbjct: 101 SVQLINDRC----VDMQRSRHEK 119
>BC050069-1|AAH50069.1| 880|Homo sapiens DDX11 protein protein.
Length = 880
Score = 40.3 bits (90), Expect = 0.006
Identities = 27/83 (32%), Positives = 44/83 (53%)
Frame = +1
Query: 310 HVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRER 489
H+ K+ YCSRT ++ + + E+K KS K ++ V L SR+NLC++ DV
Sbjct: 199 HITKIYYCSRTHSQLAQFVHEVK-------KSPFGK-DVRLVSLGSRQNLCVNEDVKSLG 250
Query: 490 EGKLVDGKCHALTASYIRDRHER 558
+L++ +C R RHE+
Sbjct: 251 SVQLINDRC----VDMQRSRHEK 269
Score = 33.9 bits (74), Expect = 0.53
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 187 MLELKRALDAKGHGLLEMPSGTGKTISLL 273
M EL R L+A G+ E P+GTGK++SL+
Sbjct: 1 MAELYRVLEAGKIGIFESPTGTGKSLSLI 29
>U33834-1|AAB06963.1| 734|Homo sapiens helicase protein.
Length = 734
Score = 38.3 bits (85), Expect = 0.025
Identities = 26/83 (31%), Positives = 44/83 (53%)
Frame = +1
Query: 310 HVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRER 489
H+ K+ YCSRT ++ + + E+K KS K ++ V L S++NLC++ DV
Sbjct: 77 HITKIYYCSRTHSQLAQFVHEVK-------KSPFGK-DVRLVSLGSQQNLCVNEDVRSLG 128
Query: 490 EGKLVDGKCHALTASYIRDRHER 558
+L++ +C R RHE+
Sbjct: 129 SVQLINDRC----VDMQRSRHEK 147
>BC150258-1|AAI50259.1| 1634|Homo sapiens CENTD1 protein protein.
Length = 1634
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +1
Query: 445 SRKNLCIHPDVS---REREGKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNREGKE 615
SR L P S R R + G ++ SY R+R +S ++ N E
Sbjct: 200 SRSKLVSRPSRSFLLRHRPVPEIPGSTKGVSGSYFRERRNVATSTEKSVAWQNSNEENSS 259
Query: 616 SMLPYG 633
S+ PYG
Sbjct: 260 SIFPYG 265
>AY422473-1|AAR13704.1| 1326|Homo sapiens myosin tail
domain-containing protein protein.
Length = 1326
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 237 DAFRNRKNHIAPVFNRSLYDTEPSSCQKVNLL-LSYSARNRKSVRRTKEFIQLL*EISRR 413
+ +N + + R ++ + S K+NLL Y ++N+K +E +++ ++S+R
Sbjct: 330 EIIKNEFKEVESAYEREKHNAQESFA-KLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKR 388
Query: 414 ETELNRSCS*FQEKLM 461
+SCS QE+L+
Sbjct: 389 LQYNEKSCSELQEELV 404
>AY049733-1|AAL12170.1| 1704|Homo sapiens ARAP2 protein.
Length = 1704
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +1
Query: 445 SRKNLCIHPDVS---REREGKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNREGKE 615
SR L P S R R + G ++ SY R+R +S ++ N E
Sbjct: 270 SRSKLVSRPSRSFLLRHRPVPEIPGSTKGVSGSYFRERRNVATSTEKSVAWQNSNEENSS 329
Query: 616 SMLPYG 633
S+ PYG
Sbjct: 330 SIFPYG 335
>AL662788-1|CAI95333.1| 1326|Homo sapiens chromosome 9 open reading
frame 93 protein.
Length = 1326
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 237 DAFRNRKNHIAPVFNRSLYDTEPSSCQKVNLL-LSYSARNRKSVRRTKEFIQLL*EISRR 413
+ +N + + R ++ + S K+NLL Y ++N+K +E +++ ++S+R
Sbjct: 330 EIIKNEFKEVESAYEREKHNAQESFA-KLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKR 388
Query: 414 ETELNRSCS*FQEKLM 461
+SCS QE+L+
Sbjct: 389 LQYNEKSCSELQEELV 404
>AL592153-1|CAI95316.1| 1326|Homo sapiens chromosome 9 open reading
frame 93 protein.
Length = 1326
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 237 DAFRNRKNHIAPVFNRSLYDTEPSSCQKVNLL-LSYSARNRKSVRRTKEFIQLL*EISRR 413
+ +N + + R ++ + S K+NLL Y ++N+K +E +++ ++S+R
Sbjct: 330 EIIKNEFKEVESAYEREKHNAQESFA-KLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKR 388
Query: 414 ETELNRSCS*FQEKLM 461
+SCS QE+L+
Sbjct: 389 LQYNEKSCSELQEELV 404
>AL359877-3|CAI94977.1| 1326|Homo sapiens chromosome 9 open reading
frame 93 protein.
Length = 1326
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Frame = +3
Query: 237 DAFRNRKNHIAPVFNRSLYDTEPSSCQKVNLL-LSYSARNRKSVRRTKEFIQLL*EISRR 413
+ +N + + R ++ + S K+NLL Y ++N+K +E +++ ++S+R
Sbjct: 330 EIIKNEFKEVESAYEREKHNAQESFA-KLNLLEKEYFSKNKKLNEDIEEQKKVIIDLSKR 388
Query: 414 ETELNRSCS*FQEKLM 461
+SCS QE+L+
Sbjct: 389 LQYNEKSCSELQEELV 404
>AF439781-1|AAL32459.1| 1704|Homo sapiens PARX protein protein.
Length = 1704
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +1
Query: 445 SRKNLCIHPDVS---REREGKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNREGKE 615
SR L P S R R + G ++ SY R+R +S ++ N E
Sbjct: 270 SRSKLVSRPSRSFLLRHRPVPEIPGSTKGVSGSYFRERRNVATSTEKSVAWQNSNEENSS 329
Query: 616 SMLPYG 633
S+ PYG
Sbjct: 330 SIFPYG 335
>AB011152-1|BAA25506.2| 1631|Homo sapiens KIAA0580 protein protein.
Length = 1631
Score = 30.3 bits (65), Expect = 6.5
Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Frame = +1
Query: 445 SRKNLCIHPDVS---REREGKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNREGKE 615
SR L P S R R + G ++ SY R+R +S ++ N E
Sbjct: 197 SRSKLVSRPSRSFLLRHRPVPEIPGSTKGVSGSYFRERRNVATSTEKSVAWQNSNEENSS 256
Query: 616 SMLPYG 633
S+ PYG
Sbjct: 257 SIFPYG 262
>BC035819-1|AAH35819.1| 212|Homo sapiens SYCE2 protein protein.
Length = 212
Score = 29.9 bits (64), Expect = 8.6
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +3
Query: 339 YSARNRKSVRRTKEFIQLL*EISRRETELNRSCS*FQEKLMYSS*CIKRKRREACRW 509
Y+ N+ + +EF Q + +IS ETEL + C + +Y C++ ++ RW
Sbjct: 112 YNDHNKIIQEKLQEFTQKMAKISHLETELKQVC--HSVETVYKDLCLQPEQSLRLRW 166
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,862,135
Number of Sequences: 237096
Number of extensions: 1784043
Number of successful extensions: 3356
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 3261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3342
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7591280850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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