Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28f22
(668 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AE013599-3149|AAM70857.2| 769|Drosophila melanogaster CG9433-PA... 305 2e-83
AF132140-1|AAD33587.1| 745|Drosophila melanogaster excision rep... 255 3e-68
AE013599-3150|AAF46689.1| 745|Drosophila melanogaster CG9433-PB... 255 3e-68
AY382628-1|AAR20861.1| 685|Drosophila melanogaster xeroderma pi... 153 2e-37
AY382627-1|AAR20860.1| 685|Drosophila melanogaster xeroderma pi... 153 2e-37
AY382626-1|AAR20858.1| 685|Drosophila melanogaster xeroderma pi... 153 2e-37
AY382625-1|AAR20856.1| 685|Drosophila melanogaster xeroderma pi... 153 2e-37
AY382623-1|AAR20853.1| 685|Drosophila melanogaster xeroderma pi... 153 2e-37
AY382622-1|AAR20851.1| 685|Drosophila melanogaster xeroderma pi... 153 2e-37
AY382620-1|AAR20849.1| 685|Drosophila melanogaster xeroderma pi... 153 2e-37
AY382619-1|AAR20847.1| 685|Drosophila melanogaster xeroderma pi... 153 2e-37
BT021290-1|AAX33438.1| 985|Drosophila melanogaster RE31401p pro... 48 3e-12
AE014298-785|AAF46074.1| 985|Drosophila melanogaster CG4078-PA ... 48 3e-12
AY058540-1|AAL13769.1| 861|Drosophila melanogaster LD24267p pro... 39 0.007
AL121806-14|CAB58099.1| 861|Drosophila melanogaster EG:33C11.2 ... 39 0.007
AE014298-169|AAF45598.1| 861|Drosophila melanogaster CG11403-PA... 39 0.007
AE014134-428|AAF51242.3| 538|Drosophila melanogaster CG18559-PA... 29 7.6
>AE013599-3149|AAM70857.2| 769|Drosophila melanogaster CG9433-PA,
isoform A protein.
Length = 769
Score = 305 bits (750), Expect = 2e-83
Identities = 138/184 (75%), Positives = 162/184 (88%)
Frame = +1
Query: 115 MKLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYM 294
MKL+VDGLLVYFPY+YIYPEQYAYMLELKR+LDAKGH LLEMPSGTGKT +LLSLIVAYM
Sbjct: 1 MKLSVDGLLVYFPYEYIYPEQYAYMLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYM 60
Query: 295 IQNPHHVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPD 474
+++P VRKLIYCSRTVPEIEKV+ EL+NL YYE+ P TG+VLSSRKN+CIHP+
Sbjct: 61 VEHPETVRKLIYCSRTVPEIEKVIAELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPE 120
Query: 475 VSREREGKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNREGKESMLPYGVYTMDDM 654
VS+EREGK VDGKC+ LTASYIR+RHE D+ PICQ++EGF+ EGKES LP GVY++DD+
Sbjct: 121 VSKEREGKAVDGKCYGLTASYIRERHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDL 180
Query: 655 KQYG 666
K+YG
Sbjct: 181 KEYG 184
>AF132140-1|AAD33587.1| 745|Drosophila melanogaster excision repair
protein ERCC2/XPD protein.
Length = 745
Score = 255 bits (625), Expect = 3e-68
Identities = 116/160 (72%), Positives = 138/160 (86%)
Frame = +1
Query: 187 MLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHVRKLIYCSRTVPEIEKVL 366
MLELKR+LDAKGH LLEMPSGTGKT +LLSLIVAYM+++P VRKLIYCSRTVPEIEKV+
Sbjct: 1 MLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYMVEHPETVRKLIYCSRTVPEIEKVI 60
Query: 367 EELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVDGKCHALTASYIRD 546
EL+NL YYE+ P TG+VLSSRKN+CIHP+VS+EREGK VDGKC+ LTASYIR+
Sbjct: 61 AELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRE 120
Query: 547 RHERDSSVPICQFYEGFNREGKESMLPYGVYTMDDMKQYG 666
RHE D+ PICQ++EGF+ EGKES LP GVY++DD+K+YG
Sbjct: 121 RHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYG 160
>AE013599-3150|AAF46689.1| 745|Drosophila melanogaster CG9433-PB,
isoform B protein.
Length = 745
Score = 255 bits (625), Expect = 3e-68
Identities = 116/160 (72%), Positives = 138/160 (86%)
Frame = +1
Query: 187 MLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHVRKLIYCSRTVPEIEKVL 366
MLELKR+LDAKGH LLEMPSGTGKT +LLSLIVAYM+++P VRKLIYCSRTVPEIEKV+
Sbjct: 1 MLELKRSLDAKGHCLLEMPSGTGKTATLLSLIVAYMVEHPETVRKLIYCSRTVPEIEKVI 60
Query: 367 EELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVDGKCHALTASYIRD 546
EL+NL YYE+ P TG+VLSSRKN+CIHP+VS+EREGK VDGKC+ LTASYIR+
Sbjct: 61 AELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRE 120
Query: 547 RHERDSSVPICQFYEGFNREGKESMLPYGVYTMDDMKQYG 666
RHE D+ PICQ++EGF+ EGKES LP GVY++DD+K+YG
Sbjct: 121 RHEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYG 160
>AY382628-1|AAR20861.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 153 bits (372), Expect = 2e-37
Identities = 66/99 (66%), Positives = 82/99 (82%)
Frame = +1
Query: 370 ELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVDGKCHALTASYIRDR 549
EL+NL YYE+ P TG+VLSSRKN+CIHP+VS+EREGK VDGKC+ LTASYIR+R
Sbjct: 2 ELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRER 61
Query: 550 HERDSSVPICQFYEGFNREGKESMLPYGVYTMDDMKQYG 666
HE D+ PICQ++EGF+ EGKES LP GVY++DD+K+YG
Sbjct: 62 HEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYG 100
>AY382627-1|AAR20860.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 153 bits (372), Expect = 2e-37
Identities = 66/99 (66%), Positives = 82/99 (82%)
Frame = +1
Query: 370 ELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVDGKCHALTASYIRDR 549
EL+NL YYE+ P TG+VLSSRKN+CIHP+VS+EREGK VDGKC+ LTASYIR+R
Sbjct: 2 ELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRER 61
Query: 550 HERDSSVPICQFYEGFNREGKESMLPYGVYTMDDMKQYG 666
HE D+ PICQ++EGF+ EGKES LP GVY++DD+K+YG
Sbjct: 62 HEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYG 100
>AY382626-1|AAR20858.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 153 bits (372), Expect = 2e-37
Identities = 66/99 (66%), Positives = 82/99 (82%)
Frame = +1
Query: 370 ELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVDGKCHALTASYIRDR 549
EL+NL YYE+ P TG+VLSSRKN+CIHP+VS+EREGK VDGKC+ LTASYIR+R
Sbjct: 2 ELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRER 61
Query: 550 HERDSSVPICQFYEGFNREGKESMLPYGVYTMDDMKQYG 666
HE D+ PICQ++EGF+ EGKES LP GVY++DD+K+YG
Sbjct: 62 HEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYG 100
>AY382625-1|AAR20856.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 153 bits (372), Expect = 2e-37
Identities = 66/99 (66%), Positives = 82/99 (82%)
Frame = +1
Query: 370 ELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVDGKCHALTASYIRDR 549
EL+NL YYE+ P TG+VLSSRKN+CIHP+VS+EREGK VDGKC+ LTASYIR+R
Sbjct: 2 ELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRER 61
Query: 550 HERDSSVPICQFYEGFNREGKESMLPYGVYTMDDMKQYG 666
HE D+ PICQ++EGF+ EGKES LP GVY++DD+K+YG
Sbjct: 62 HEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYG 100
>AY382623-1|AAR20853.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 153 bits (372), Expect = 2e-37
Identities = 66/99 (66%), Positives = 82/99 (82%)
Frame = +1
Query: 370 ELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVDGKCHALTASYIRDR 549
EL+NL YYE+ P TG+VLSSRKN+CIHP+VS+EREGK VDGKC+ LTASYIR+R
Sbjct: 2 ELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRER 61
Query: 550 HERDSSVPICQFYEGFNREGKESMLPYGVYTMDDMKQYG 666
HE D+ PICQ++EGF+ EGKES LP GVY++DD+K+YG
Sbjct: 62 HEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYG 100
>AY382622-1|AAR20851.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 153 bits (372), Expect = 2e-37
Identities = 66/99 (66%), Positives = 82/99 (82%)
Frame = +1
Query: 370 ELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVDGKCHALTASYIRDR 549
EL+NL YYE+ P TG+VLSSRKN+CIHP+VS+EREGK VDGKC+ LTASYIR+R
Sbjct: 2 ELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRER 61
Query: 550 HERDSSVPICQFYEGFNREGKESMLPYGVYTMDDMKQYG 666
HE D+ PICQ++EGF+ EGKES LP GVY++DD+K+YG
Sbjct: 62 HEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYG 100
>AY382620-1|AAR20849.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 153 bits (372), Expect = 2e-37
Identities = 66/99 (66%), Positives = 82/99 (82%)
Frame = +1
Query: 370 ELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVDGKCHALTASYIRDR 549
EL+NL YYE+ P TG+VLSSRKN+CIHP+VS+EREGK VDGKC+ LTASYIR+R
Sbjct: 2 ELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRER 61
Query: 550 HERDSSVPICQFYEGFNREGKESMLPYGVYTMDDMKQYG 666
HE D+ PICQ++EGF+ EGKES LP GVY++DD+K+YG
Sbjct: 62 HEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYG 100
>AY382619-1|AAR20847.1| 685|Drosophila melanogaster xeroderma
pigmentosum D protein.
Length = 685
Score = 153 bits (372), Expect = 2e-37
Identities = 66/99 (66%), Positives = 82/99 (82%)
Frame = +1
Query: 370 ELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVDGKCHALTASYIRDR 549
EL+NL YYE+ P TG+VLSSRKN+CIHP+VS+EREGK VDGKC+ LTASYIR+R
Sbjct: 2 ELQNLMVYYERHCPNPPPFTGLVLSSRKNMCIHPEVSKEREGKAVDGKCYGLTASYIRER 61
Query: 550 HERDSSVPICQFYEGFNREGKESMLPYGVYTMDDMKQYG 666
HE D+ PICQ++EGF+ EGKES LP GVY++DD+K+YG
Sbjct: 62 HEMDTETPICQYFEGFSLEGKESTLPVGVYSIDDLKEYG 100
>BT021290-1|AAX33438.1| 985|Drosophila melanogaster RE31401p
protein.
Length = 985
Score = 48.0 bits (109), Expect(2) = 3e-12
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = +1
Query: 127 VDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYM-IQN 303
+ G+ V+FP++ YP Q AYM ++ L +G+LE P+GTGKT+SLL +A++ +
Sbjct: 6 IAGIPVHFPFEP-YPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQ 64
Query: 304 PHHVRKLI 327
H ++++
Sbjct: 65 SEHQKQMV 72
Score = 41.9 bits (94), Expect(2) = 3e-12
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +1
Query: 313 VRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRERE 492
V K+IY SRT ++ + + ELK N+ VVL SR LCIHP+V RE+
Sbjct: 106 VPKVIYASRTHSQLTQAMRELKRT---------AYANMRSVVLGSRDQLCIHPEVMREQG 156
Query: 493 GKLVDGKC----HALTASY 537
C H+ T S+
Sbjct: 157 NSNKTNMCKLRVHSKTCSF 175
>AE014298-785|AAF46074.1| 985|Drosophila melanogaster CG4078-PA
protein.
Length = 985
Score = 48.0 bits (109), Expect(2) = 3e-12
Identities = 25/68 (36%), Positives = 44/68 (64%), Gaps = 1/68 (1%)
Frame = +1
Query: 127 VDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYM-IQN 303
+ G+ V+FP++ YP Q AYM ++ L +G+LE P+GTGKT+SLL +A++ +
Sbjct: 6 IAGIPVHFPFEP-YPVQRAYMEKVIHCLRDGTNGVLESPTGTGKTLSLLCSSLAWIRTRQ 64
Query: 304 PHHVRKLI 327
H ++++
Sbjct: 65 SEHQKQMV 72
Score = 41.9 bits (94), Expect(2) = 3e-12
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Frame = +1
Query: 313 VRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSRERE 492
V K+IY SRT ++ + + ELK N+ VVL SR LCIHP+V RE+
Sbjct: 106 VPKVIYASRTHSQLTQAMRELKRT---------AYANMRSVVLGSRDQLCIHPEVMREQG 156
Query: 493 GKLVDGKC----HALTASY 537
C H+ T S+
Sbjct: 157 NSNKTNMCKLRVHSKTCSF 175
>AY058540-1|AAL13769.1| 861|Drosophila melanogaster LD24267p
protein.
Length = 861
Score = 38.7 bits (86), Expect = 0.007
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +1
Query: 148 FPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHVR-KL 324
FPY Y Q M EL + L+ G+ E P+GTGK+++L + ++ ++ VR ++
Sbjct: 20 FPYSP-YEIQEQLMQELFQVLERGQVGIFESPTGTGKSLTLTCGALTWLARHEELVRTEM 78
Query: 325 IYCSRTV-PEIEKVLEELKNLFNYYEKSQGE 414
+ R V E+ K+ EE + N+ E SQG+
Sbjct: 79 LARIRGVEQELAKLKEESEQSSNWLE-SQGK 108
Score = 29.1 bits (62), Expect = 5.7
Identities = 18/82 (21%), Positives = 41/82 (50%)
Frame = +1
Query: 319 KLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGK 498
++ +CSRT ++ +++ EL+ + G+ ++ + L SR+ LC +P V + +
Sbjct: 189 QIFFCSRTHSQLAQIVAELR------KTPHGQ--SVRSISLGSRQQLCGNPAVRKLKHVG 240
Query: 499 LVDGKCHALTASYIRDRHERDS 564
L++ +C + R + S
Sbjct: 241 LMNERCLDMATKKARPNPSKKS 262
>AL121806-14|CAB58099.1| 861|Drosophila melanogaster EG:33C11.2
protein.
Length = 861
Score = 38.7 bits (86), Expect = 0.007
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +1
Query: 148 FPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHVR-KL 324
FPY Y Q M EL + L+ G+ E P+GTGK+++L + ++ ++ VR ++
Sbjct: 20 FPYSP-YEIQEQLMQELFQVLERGQVGIFESPTGTGKSLTLTCGALTWLARHEELVRTEM 78
Query: 325 IYCSRTV-PEIEKVLEELKNLFNYYEKSQGE 414
+ R V E+ K+ EE + N+ E SQG+
Sbjct: 79 LARIRGVEQELAKLKEESEQSSNWLE-SQGK 108
Score = 29.1 bits (62), Expect = 5.7
Identities = 18/82 (21%), Positives = 41/82 (50%)
Frame = +1
Query: 319 KLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGK 498
++ +CSRT ++ +++ EL+ + G+ ++ + L SR+ LC +P V + +
Sbjct: 189 QIFFCSRTHSQLAQIVAELR------KTPHGQ--SVRSISLGSRQQLCGNPAVRKLKHVG 240
Query: 499 LVDGKCHALTASYIRDRHERDS 564
L++ +C + R + S
Sbjct: 241 LMNERCLDMATKKARPNPSKKS 262
>AE014298-169|AAF45598.1| 861|Drosophila melanogaster CG11403-PA
protein.
Length = 861
Score = 38.7 bits (86), Expect = 0.007
Identities = 30/91 (32%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Frame = +1
Query: 148 FPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHVR-KL 324
FPY Y Q M EL + L+ G+ E P+GTGK+++L + ++ ++ VR ++
Sbjct: 20 FPYSP-YEIQEQLMQELFQVLERGQVGIFESPTGTGKSLTLTCGALTWLARHEELVRTEM 78
Query: 325 IYCSRTV-PEIEKVLEELKNLFNYYEKSQGE 414
+ R V E+ K+ EE + N+ E SQG+
Sbjct: 79 LARIRGVEQELAKLKEESEQSSNWLE-SQGK 108
Score = 29.1 bits (62), Expect = 5.7
Identities = 18/82 (21%), Positives = 41/82 (50%)
Frame = +1
Query: 319 KLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGK 498
++ +CSRT ++ +++ EL+ + G+ ++ + L SR+ LC +P V + +
Sbjct: 189 QIFFCSRTHSQLAQIVAELR------KTPHGQ--SVRSISLGSRQQLCGNPAVRKLKHVG 240
Query: 499 LVDGKCHALTASYIRDRHERDS 564
L++ +C + R + S
Sbjct: 241 LMNERCLDMATKKARPNPSKKS 262
>AE014134-428|AAF51242.3| 538|Drosophila melanogaster CG18559-PA
protein.
Length = 538
Score = 28.7 bits (61), Expect = 7.6
Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 1/100 (1%)
Frame = +1
Query: 211 DAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHVRKLIYCSRTVPEIEKVLE-ELKNLF 387
D GH L M G + + L + Y+ +NP +KL + EK L+ E +
Sbjct: 329 DLVGHALTVMLDGYDTSGTALLHALYYLAENPAVQQKLRVEILSCMASEKSLDFEKLSSL 388
Query: 388 NYYEKSQGEKPNLTGVVLSSRKNLCIHPDVSREREGKLVD 507
Y E+ E L+ ++ K +C P V R E K +D
Sbjct: 389 QYLEQVIYESLRLSSLIPQYTK-VCTLPTVIRLSESKSLD 427
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,378,345
Number of Sequences: 53049
Number of extensions: 557242
Number of successful extensions: 1342
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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