Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28f22
(668 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024801-6|AAP86611.1| 197|Caenorhabditis elegans Hypothetical ... 200 7e-52
Z83224-1|CAB05720.1| 994|Caenorhabditis elegans Hypothetical pr... 38 0.005
Z79754-14|CAB02102.1| 994|Caenorhabditis elegans Hypothetical p... 38 0.005
Z49128-2|CAA88959.1| 848|Caenorhabditis elegans Hypothetical pr... 34 0.10
U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical pr... 31 0.98
Z81526-5|CAB04262.1| 983|Caenorhabditis elegans Hypothetical pr... 29 3.0
Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr... 29 3.9
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p... 29 3.9
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein. 29 3.9
U61957-5|AAB03417.3| 559|Caenorhabditis elegans Suppressor of c... 28 5.2
U61957-4|AAM81129.1| 558|Caenorhabditis elegans Suppressor of c... 28 5.2
AL021492-4|CAA16384.1| 492|Caenorhabditis elegans Hypothetical ... 28 5.2
AF068919-1|AAC39129.1| 559|Caenorhabditis elegans Ras-binding p... 28 5.2
AF054827-1|AAC25697.1| 559|Caenorhabditis elegans leucine-rich ... 28 5.2
Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical pr... 28 6.9
Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical p... 28 6.9
>AC024801-6|AAP86611.1| 197|Caenorhabditis elegans Hypothetical
protein Y50D7A.11 protein.
Length = 197
Score = 200 bits (488), Expect = 7e-52
Identities = 93/177 (52%), Positives = 124/177 (70%)
Frame = +1
Query: 115 MKLTVDGLLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYM 294
M+L +DGL V FPYDY+YPEQ YM E+K+ALDA+GHGLLEMPSGTGKT+SLLSL++AYM
Sbjct: 1 MQLDIDGLKVLFPYDYVYPEQVLYMKEVKKALDARGHGLLEMPSGTGKTVSLLSLVLAYM 60
Query: 295 IQNPHHVRKLIYCSRTVPEIEKVLEELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPD 474
I P + KL+YCSRT+PEIEK +EE+K L++Y+EK G+ V +S+RKNLC++
Sbjct: 61 ISYPDKLDKLVYCSRTIPEIEKCVEEMKVLYDYWEKETGQPVAKITVAMSARKNLCVNEP 120
Query: 475 VSREREGKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNREGKESMLPYGVYTM 645
V+ R G VD C LTAS R + D ++ C ++E F E K + GV+ +
Sbjct: 121 VAALRFGNTVDSACQKLTASSARQKRAEDPTLEACDYFENF--EAKSVPMQNGVWNL 175
>Z83224-1|CAB05720.1| 994|Caenorhabditis elegans Hypothetical
protein F25H2.13 protein.
Length = 994
Score = 38.3 bits (85), Expect = 0.005
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +1
Query: 136 LLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHV 315
L V FP++ Y Q +M + LD K LE P+GTGKT+SLL +A+ +Q
Sbjct: 17 LSVKFPFEP-YECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAW-VQRQKET 74
Query: 316 RKLIYC---SRTVPEIEKVLEELKNLF 387
+ L + + EK E+LK+ +
Sbjct: 75 KPLDFATWQTSGAGGAEKTDEKLKSAY 101
>Z79754-14|CAB02102.1| 994|Caenorhabditis elegans Hypothetical
protein F25H2.13 protein.
Length = 994
Score = 38.3 bits (85), Expect = 0.005
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 3/87 (3%)
Frame = +1
Query: 136 LLVYFPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQNPHHV 315
L V FP++ Y Q +M + LD K LE P+GTGKT+SLL +A+ +Q
Sbjct: 17 LSVKFPFEP-YECQRIFMKNVVDVLDRKLDAALESPTGTGKTLSLLCSTLAW-VQRQKET 74
Query: 316 RKLIYC---SRTVPEIEKVLEELKNLF 387
+ L + + EK E+LK+ +
Sbjct: 75 KPLDFATWQTSGAGGAEKTDEKLKSAY 101
>Z49128-2|CAA88959.1| 848|Caenorhabditis elegans Hypothetical
protein M03C11.2 protein.
Length = 848
Score = 33.9 bits (74), Expect = 0.10
Identities = 15/49 (30%), Positives = 30/49 (61%)
Frame = +1
Query: 148 FPYDYIYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYM 294
FP+ Y Q M E+++ ++ + G+ E P+GTGK++S+L + ++
Sbjct: 6 FPFQP-YDIQLNLMREIRQCIEQRKIGIFESPTGTGKSLSVLCSTMTWL 53
Score = 32.3 bits (70), Expect = 0.32
Identities = 23/87 (26%), Positives = 44/87 (50%), Gaps = 1/87 (1%)
Frame = +1
Query: 298 QNPHHVRKLIYCSRTVPEIEKVLEEL-KNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPD 474
+ P K+ Y SRT ++E++ EEL K F +P + V +SR LC++ +
Sbjct: 178 EKPLKCLKIFYASRTHSQLEQLAEELAKTRF---------QPRI--VTCASRGTLCVNEE 226
Query: 475 VSREREGKLVDGKCHALTASYIRDRHE 555
V + + L++ KC L + + ++ +
Sbjct: 227 VKKLKLNHLINEKCMELRKNGMSEKEK 253
>U67949-1|AAL06028.2| 633|Caenorhabditis elegans Hypothetical
protein F55A4.10 protein.
Length = 633
Score = 30.7 bits (66), Expect = 0.98
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +1
Query: 292 MIQNPHHVRKLIYCSRTVPEIEKVL--EELKNLF 387
+IQ H+R+L+ S++ EIE + EE KN+F
Sbjct: 560 LIQQDSHIRELLVSSKSSAEIENIFEHEEYKNMF 593
>Z81526-5|CAB04262.1| 983|Caenorhabditis elegans Hypothetical
protein F33H2.1 protein.
Length = 983
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/46 (32%), Positives = 27/46 (58%)
Frame = +1
Query: 163 IYPEQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAYMIQ 300
+Y Q ++ + AL + L E P+G+GKT++LL+ A++ Q
Sbjct: 90 LYSTQKLMIVRILTALKNSQNVLGESPTGSGKTMALLASTCAWLKQ 135
>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 493 GKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNR-EGKESMLPY 630
GKLV KC + E D SV + QF + GK+ L Y
Sbjct: 263 GKLVSPKCDQFREQIVATAVEYDGSVKMLQFENALKKHSGKQKRLKY 309
>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
protein C35C5.1 protein.
Length = 2962
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 493 GKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNR-EGKESMLPY 630
GKLV KC + E D SV + QF + GK+ L Y
Sbjct: 263 GKLVSPKCDQFREQIVATAVEYDGSVKMLQFENALKKHSGKQKRLKY 309
>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
Length = 2962
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +1
Query: 493 GKLVDGKCHALTASYIRDRHERDSSVPICQFYEGFNR-EGKESMLPY 630
GKLV KC + E D SV + QF + GK+ L Y
Sbjct: 263 GKLVSPKCDQFREQIVATAVEYDGSVKMLQFENALKKHSGKQKRLKY 309
>U61957-5|AAB03417.3| 559|Caenorhabditis elegans Suppressor of clr
protein 2, isoforma protein.
Length = 559
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 172 EQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
EQ + +LK LD + + + E+PS GK SL+ +V+Y
Sbjct: 182 EQIGNLSKLKM-LDVRENKIRELPSAIGKLTSLVVCLVSY 220
>U61957-4|AAM81129.1| 558|Caenorhabditis elegans Suppressor of clr
protein 2, isoformb protein.
Length = 558
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 172 EQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
EQ + +LK LD + + + E+PS GK SL+ +V+Y
Sbjct: 181 EQIGNLSKLKM-LDVRENKIRELPSAIGKLTSLVVCLVSY 219
>AL021492-4|CAA16384.1| 492|Caenorhabditis elegans Hypothetical
protein Y45F10D.9 protein.
Length = 492
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/82 (21%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +1
Query: 304 PHHVRKLIYCSRTVPEIEKVLE-ELKNLFNYYEKSQGEKPNLTGVVLSSRKNLCIHPDVS 480
P + + + C V +E+ E + + Y+ + KP ++L + KN C S
Sbjct: 91 PKVIIQHLLCKNIVKNLEEDGEVDARKKAGYHSIADPGKPTEINIILDAEKNFCSFELFS 150
Query: 481 RE--REGKLVDGKCHALTASYI 540
+ +GK+ K HA+ ++
Sbjct: 151 KTPISKGKIFSIKLHAVRGDHL 172
>AF068919-1|AAC39129.1| 559|Caenorhabditis elegans Ras-binding
protein SUR-8 protein.
Length = 559
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 172 EQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
EQ + +LK LD + + + E+PS GK SL+ +V+Y
Sbjct: 182 EQIGNLSKLKM-LDVRENKIRELPSAIGKLTSLVVCLVSY 220
>AF054827-1|AAC25697.1| 559|Caenorhabditis elegans leucine-rich
repeat protein SOC-2 protein.
Length = 559
Score = 28.3 bits (60), Expect = 5.2
Identities = 15/40 (37%), Positives = 24/40 (60%)
Frame = +1
Query: 172 EQYAYMLELKRALDAKGHGLLEMPSGTGKTISLLSLIVAY 291
EQ + +LK LD + + + E+PS GK SL+ +V+Y
Sbjct: 182 EQIGNLSKLKM-LDVRENKIRELPSAIGKLTSLVVCLVSY 220
>Z48582-8|CAB70201.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 103 YIFTMKLTVDGLLVYFPYDYIYPEQY-AYMLELKRALDAKGHGLLEMPSGTGKTIS 267
Y F +T D VY+ Y +Y ++Y + +E + + A PS T+S
Sbjct: 630 YTFRATMTTDDKKVYYTYANVYIQEYSSTTIESESSTSAVASSTSSTPSTPSSTLS 685
>Z48544-10|CAB70192.1| 3178|Caenorhabditis elegans Hypothetical
protein ZK945.9 protein.
Length = 3178
Score = 27.9 bits (59), Expect = 6.9
Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Frame = +1
Query: 103 YIFTMKLTVDGLLVYFPYDYIYPEQY-AYMLELKRALDAKGHGLLEMPSGTGKTIS 267
Y F +T D VY+ Y +Y ++Y + +E + + A PS T+S
Sbjct: 630 YTFRATMTTDDKKVYYTYANVYIQEYSSTTIESESSTSAVASSTSSTPSTPSSTLS 685
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,400,975
Number of Sequences: 27780
Number of extensions: 294611
Number of successful extensions: 778
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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