Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28f22
         (668 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   2.0  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   4.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   8.0  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +1

Query: 514 CHALTASYIRDRHERDSSVPICQF 585
           C+     + +D+HE+  ++ +C+F
Sbjct: 17  CYYSLKRHFQDKHEQSDTLYVCEF 40


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 546 VSYIACCKGMTFAIY 502
           V Y  CC+G   AIY
Sbjct: 344 VQYDTCCQGRATAIY 358


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 449 GKTYVFILMYQEKEK 493
           G+TY+F L Y E E+
Sbjct: 546 GRTYLFDLDYNESEE 560


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,542
Number of Sequences: 438
Number of extensions: 3567
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)