Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28f15
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0928 + 24488891-24489675,24490369-24490421,24490479-244912...    30   1.5  
01_06_0928 + 33085403-33089224                                         29   4.5  
05_05_0166 + 22864387-22865010,22866215-22866500,22867485-22868035     28   6.0  

>12_02_0928 +
           24488891-24489675,24490369-24490421,24490479-24491229,
           24491322-24491533,24491780-24492570,24492686-24492784
          Length = 896

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
 Frame = +2

Query: 215 SLWSKYMFPKPFAPTTLKSYKSRFIKIVYCSVDDVHLEDMSYSLDMEFDSIENQTL--LI 388
           SLW + +   P   TT+     R I +V C + +  L      L M F  + N T+   I
Sbjct: 669 SLWLEKITLPPLPKTTIPLKNLRKISLVLCELTN-SLRGSKVDLSMTFPRLSNLTIDHCI 727

Query: 389 DPQELCRRMLELRSV 433
           D +EL   + E+ S+
Sbjct: 728 DLKELPSSICEISSL 742


>01_06_0928 + 33085403-33089224
          Length = 1273

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 383  LIDPQELCRRMLELRSVTKETLQLTINFYTNMMNLPEYKIPRMVMLPRDKELKNI 547
            L+ P  LC   L   S+T   L L I   T++  L    I  +  LP ++ L+++
Sbjct: 935  LVPPSGLCELYLSSCSITDGALALCIGGLTSLRELSLTNIMTLTTLPSEEVLQHL 989


>05_05_0166 + 22864387-22865010,22866215-22866500,22867485-22868035
          Length = 486

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
 Frame = -3

Query: 361 VKLHVQRVRHVFQVNIVYRAVHNFNKSRLVTF*SGRRKRFGKHVL---APQTVVL---YL 200
           V L+   V+  + VN  + A++ +  S LV    G R  FG  +L       V L   YL
Sbjct: 42  VVLYGSIVKKKWAVNSAFMALYAYASSLLVWVLVGFRMAFGDQLLPFWGKAGVALTQSYL 101

Query: 199 VGRASLP 179
           VGRA+LP
Sbjct: 102 VGRATLP 108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,211,085
Number of Sequences: 37544
Number of extensions: 362270
Number of successful extensions: 997
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 969
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)