Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28f15
         (684 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF100663-3|AAC68980.1|  529|Caenorhabditis elegans Udp-glucurono...    29   2.3  
AF100663-2|AAC68981.2|  532|Caenorhabditis elegans Udp-glucurono...    28   7.1  
Z81461-1|CAB03833.1|  944|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AF099918-4|AAN63402.1|  243|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF099918-3|AAN63401.1|  436|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z81067-4|CAB02976.2|  632|Caenorhabditis elegans Hypothetical
           protein F23A7.5 protein.
          Length = 632

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = +1

Query: 394 PRTVQAHARTSIGHQRNATVDYKLLHQHDEFARIQNSPHGYAAARQGAQ 540
           PR  + HA  S  H+R+ TV  +L H++    R + S   + ++ + +Q
Sbjct: 270 PRDPRRHANGSSSHRRDKTVSDELQHENSHTPRQEESQSTFGSSFRPSQ 318


>AF100663-3|AAC68980.1|  529|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein20 protein.
          Length = 529

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 512 VMLPR-DKELKNIRKKEKNLMLKNVIDTILNFINDKIKMLNGDYVHD 649
           V++P  DK LK   K  KN+++    + I NF+  +  ML   ++ D
Sbjct: 50  VLIPVFDKALKTSLKSTKNVIMLQPTEDIANFVKGRATMLKNIWLQD 96


>AF100663-2|AAC68981.2|  532|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein19 protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 509 MVMLPRDKELKNIRKKEKNLMLKNVIDTILNFINDKIKMLNGDYVHD 649
           +VM   D  +K   K  KN++  N  D +  F   + KMLN  +  D
Sbjct: 53  VVMPVFDDSIKTSLKSTKNIIFVNSSDDVAAFAKARTKMLNNLWTMD 99


>Z81461-1|CAB03833.1|  944|Caenorhabditis elegans Hypothetical
           protein C04F12.1 protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 431 VTKETLQLTINFYTNMMNLPEYKIPRMVMLPRDKELKNIRKKEKNLMLKNVIDTILNFIN 610
           V +  L+L   F  N       K P+ V++ RD   +   K  +N   + +  +I+N  N
Sbjct: 721 VDEHLLKLRARFMLNHYITSRKKYPQQVVILRDGVSEGQHKMVRNEEFQAIKQSIMNVFN 780

Query: 611 DK 616
           +K
Sbjct: 781 EK 782


>AF099918-4|AAN63402.1|  243|Caenorhabditis elegans Hypothetical
           protein H05C05.2b protein.
          Length = 243

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
 Frame = +2

Query: 164 DLATDRQRC-TPDEVKNNSLWSKYMFPK------PFAPTTLKSYKSRFIKIVYCSVDDVH 322
           D+ T R    +P  V NN + +    P       P AP + ++Y ++F+K +YC + D+ 
Sbjct: 66  DVTTSRHDVESPKNVVNNFVVTPIETPSTPVQYPPQAPFSDENYYAKFLKEMYCFLSDID 125

Query: 323 LEDMSYSLDMEFDSIE-NQTLLIDPQEL 403
               S   D+   +   N+ + + P  +
Sbjct: 126 KNRFSKLKDLSRQAARLNKGMKLQPSTI 153


>AF099918-3|AAN63401.1|  436|Caenorhabditis elegans Hypothetical
           protein H05C05.2a protein.
          Length = 436

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 21/88 (23%), Positives = 40/88 (45%), Gaps = 8/88 (9%)
 Frame = +2

Query: 164 DLATDRQRC-TPDEVKNNSLWSKYMFPK------PFAPTTLKSYKSRFIKIVYCSVDDVH 322
           D+ T R    +P  V NN + +    P       P AP + ++Y ++F+K +YC + D+ 
Sbjct: 259 DVTTSRHDVESPKNVVNNFVVTPIETPSTPVQYPPQAPFSDENYYAKFLKEMYCFLSDID 318

Query: 323 LEDMSYSLDMEFDSIE-NQTLLIDPQEL 403
               S   D+   +   N+ + + P  +
Sbjct: 319 KNRFSKLKDLSRQAARLNKGMKLQPSTI 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,309,874
Number of Sequences: 27780
Number of extensions: 335707
Number of successful extensions: 1022
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1022
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)