Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28f08
         (614 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe...    80   2e-16
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi...    27   2.2  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    26   3.8  
SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    25   8.7  

>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 580

 Score = 80.2 bits (189), Expect = 2e-16
 Identities = 45/96 (46%), Positives = 63/96 (65%), Gaps = 1/96 (1%)
 Frame = +3

Query: 330 SEPDFSEGLYGNMKMIQSSGEHRDRVYTDVENLSIKMDGQTVWVRARLQTSRAKG-KQCF 506
           +E D+S G YG++ + +S+     R YT + ++S K DGQTV +RAR+ TSR +G K CF
Sbjct: 67  NEIDYSAGKYGDLPLNRSTARP-GRTYTQISDISAKNDGQTVLLRARVYTSRLQGNKMCF 125

Query: 507 AVLRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRE 614
             LRQ   T+Q L  VN+   ISKQMVK+ G+I+ E
Sbjct: 126 FSLRQKYDTIQALAVVNKD-TISKQMVKWCGSISLE 160


>SPBC15D4.14 |taf73||TATA-binding protein associated factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -1

Query: 524 GLPQHSKALLAFSSRSLQTGSNP 456
           G+P HS+ LL ++ +S+Q G  P
Sbjct: 224 GIPGHSEQLLDYNKQSIQLGLRP 246


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +1

Query: 295 SIRLHQLSHQRNQSLTSQKDF 357
           SIR+  LSHQR  ++  QK+F
Sbjct: 86  SIRIKSLSHQRKAAVELQKNF 106


>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 399 DRVYTDVENLSIKMDGQTV 455
           DR Y D+ N+S+  DG T+
Sbjct: 7   DRDYYDILNISVDADGDTI 25


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,089,709
Number of Sequences: 5004
Number of extensions: 35972
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)