Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28f08
         (614 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein O-fucosylt...    25   1.9  
AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan transpo...    23   7.8  
AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan transpo...    23   7.8  

>DQ139945-1|ABA29466.1|  399|Anopheles gambiae protein
           O-fucosyltransferase 1 protein.
          Length = 399

 Score = 25.0 bits (52), Expect = 1.9
 Identities = 11/43 (25%), Positives = 19/43 (44%)
 Frame = -3

Query: 396 DVHLTIGSFSYSHKVLLRSQALIPLMAELMKPYARLSFVVSQR 268
           D +  +G     H+V+     +  L   L  P  R+SF  ++R
Sbjct: 77  DTYFQVGPLQAFHRVITMENFMKTLAPSLWPPAERISFCYTER 119


>AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 357 YGNMKMIQSSGEHRDRVYTDVENLSIKMDGQT 452
           +GN+ M  S     + VY DV  +SI MD  T
Sbjct: 336 FGNVMMYSSYNRFHNNVYRDVTIVSI-MDTLT 366


>AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 357 YGNMKMIQSSGEHRDRVYTDVENLSIKMDGQT 452
           +GN+ M  S     + VY DV  +SI MD  T
Sbjct: 336 FGNVMMYSSYNRFHNNVYRDVTIVSI-MDTLT 366


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 516,931
Number of Sequences: 2352
Number of extensions: 8581
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 60132501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)