Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28f08
         (614 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19152-1|CAA79536.1|  531|Caenorhabditis elegans Hypothetical pr...    73   1e-13
U58756-8|AAY44005.1|  183|Caenorhabditis elegans Hypothetical pr...    29   2.6  
U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical pr...    27   8.1  

>Z19152-1|CAA79536.1|  531|Caenorhabditis elegans Hypothetical
           protein B0464.1 protein.
          Length = 531

 Score = 73.3 bits (172), Expect = 1e-13
 Identities = 38/94 (40%), Positives = 60/94 (63%)
 Frame = +3

Query: 333 EPDFSEGLYGNMKMIQSSGEHRDRVYTDVENLSIKMDGQTVWVRARLQTSRAKGKQCFAV 512
           + D S+  YG+  ++ S  E +   +  V+ +++    + VWVR R+ T+R+KGK CF V
Sbjct: 45  QEDASKDFYGSYGLVNSK-EKKVLNFLKVKEINVSNATKDVWVRGRIHTTRSKGKNCFLV 103

Query: 513 LRQTSSTVQLLVSVNEQRKISKQMVKFTGNITRE 614
           LRQ   TVQ+ + +NE  KISKQM+KF  +I++E
Sbjct: 104 LRQGVYTVQVAMFMNE--KISKQMLKFVSSISKE 135


>U58756-8|AAY44005.1|  183|Caenorhabditis elegans Hypothetical
           protein F58F9.11 protein.
          Length = 183

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +3

Query: 441 DGQTVWVRARLQTSRAKGKQCFAVLRQTSSTVQLLVSVNEQRKISKQMVKFT 596
           DG T+W+R R   S + G  C     ++++T       + +  + K  + FT
Sbjct: 106 DGDTMWIRTRRCLSESAGCNCTGNNTESTTTCPCRAMTSIESGLEKLSISFT 157


>U80448-8|AAB37821.3| 1014|Caenorhabditis elegans Hypothetical
           protein F59A3.1 protein.
          Length = 1014

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 560 LINANQQLNCARGLPQHSKALLAFS 486
           L+ A  Q  CA+G P   +A+ AFS
Sbjct: 796 LMKATDQEGCAKGFPNEKEAIRAFS 820


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,437,338
Number of Sequences: 27780
Number of extensions: 199005
Number of successful extensions: 462
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)