Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28f06
         (246 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    24   0.28 
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   2.6  
AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory recept...    21   2.6  
AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    20   3.4  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    19   7.9  

>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory
          receptor candidate 34 protein.
          Length = 324

 Score = 23.8 bits (49), Expect = 0.28
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 15 IWSTSLRSAATLLTIANSLSRPFSK 89
          I+S  L +  TLL I +S+ RP+ K
Sbjct: 25 IYSFLLLTTLTLLVILSSIDRPYLK 49


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 22  RRVCVRQQRY*LLRTVYHGHFRNFYAQ 102
           ++ CV  Q    +  + +GH++NF +Q
Sbjct: 193 QKFCVVNQYIKQVCKLNNGHYKNFLSQ 219


>AM292346-1|CAL23158.2|  314|Tribolium castaneum gustatory receptor
           candidate 25 protein.
          Length = 314

 Score = 20.6 bits (41), Expect = 2.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +1

Query: 22  RRVCVRQQRY*LLRTVYHGHFRNFYAQ 102
           ++ CV  Q    +  + +GH++NF +Q
Sbjct: 18  QKFCVVNQYIKQVCKLNNGHYKNFLSQ 44


>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 20.2 bits (40), Expect = 3.4
 Identities = 7/19 (36%), Positives = 14/19 (73%)
 Frame = +2

Query: 98  LSSKIVVAVPVNWENDNLS 154
           L SKI+   P++++N N++
Sbjct: 15  LLSKILGIAPISYKNSNVN 33


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
          protein.
          Length = 312

 Score = 19.0 bits (37), Expect = 7.9
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 34 VRQQRY*LLRTVYHGHFRN 90
          ++Q  Y  LRT Y  HF +
Sbjct: 29 LQQHGYGPLRTSYQHHFNS 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,130
Number of Sequences: 336
Number of extensions: 903
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 46
effective length of database: 107,129
effective search space used:  3749515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)