Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28f04
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces po...    31   0.16 
SPBC317.01 |mbx2|pvg4|MADS-box transcription factor Pvg4|Schizos...    26   4.4  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    26   4.4  
SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual          26   4.4  
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|...    25   5.9  
SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyce...    25   5.9  
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    25   5.9  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    25   7.7  

>SPAC18B11.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 95

 Score = 30.7 bits (66), Expect = 0.16
 Identities = 16/60 (26%), Positives = 29/60 (48%)
 Frame = +3

Query: 285 MNILGMVFSMCGLMMRLKWCAWTAVFCSSISFANSRVSDDTKQIVSSFMLSISAVVMSYL 464
           ++++     M  L +R K  AW A   +  +  N+  S  +     +FM  I+A+V +YL
Sbjct: 27  LSLVSTATCMAALFLRFKLIAWVAFILTFSNLLNANTSPSSSPTSMAFM-GIAALVSTYL 85


>SPBC317.01 |mbx2|pvg4|MADS-box transcription factor
           Pvg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 437 HFSSSNVISSKPCTNDTTLGSSYYMII*NKHIVS 538
           HFSSS V  S   + +TT GS  +  + NKH+ S
Sbjct: 82  HFSSSPVEESSTVSPETTTGS--FTPLNNKHLKS 113


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = +2

Query: 11  QSILSFIKIVQITVYLSILNYILTA*NRRTNYKTYPNL 124
           QSILSF   ++I  +LSI N  L++ N        P L
Sbjct: 571 QSILSFFPALRIMRFLSITNKSLSSDNSAFTENDIPTL 608


>SPCC736.09c |||TRAX |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 231

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
 Frame = +3

Query: 267 DLTTDYMNIL---GMVFSMCGLMMRLKWCAWTAVFCSSISFANSRVSDDTKQIVSSFMLS 437
           D+T + M  L   G  FS+  L  ++K+       CS I    S+V  + +Q +S    S
Sbjct: 133 DMTGEIMRFLVTNGSKFSVQQLTQQVKFLRGLHKNCSEIEHLPSKVKSELQQKLSVMENS 192

Query: 438 ISAV 449
           IS V
Sbjct: 193 ISKV 196


>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
           Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +3

Query: 165 PIIKSGKMQLSADPRRAD 218
           P+IK+GK ++SA+P + +
Sbjct: 770 PVIKNGKAEISAEPTKEE 787


>SPBC342.03 |||1,3-beta-glucanosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -3

Query: 193 NCIFPLFIIGPQIFVAVT 140
           N I+ LF++GP IF+  T
Sbjct: 5   NIIYALFLLGPSIFLKAT 22


>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1096

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 14  SILSFIKIVQITVYLSILN 70
           +ILSF+ IV I +YL++ N
Sbjct: 400 AILSFVSIVFIAIYLNLYN 418


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 81  LHKTEEQITKLTQIYSLIRRVTATNICGPIIKSGKMQLSADPRRADRERRYK 236
           L K E++   +T    LIR + A  I  P  K+ K  L A+P+ A+     K
Sbjct: 194 LAKIEKKYGNIT--LGLIRALLAREILSPAEKALKAALLAEPKTAELSNSMK 243


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,721
Number of Sequences: 5004
Number of extensions: 45483
Number of successful extensions: 141
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)