Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28f04
(567 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0016 + 31042619-31042795,31043066-31043170 56 1e-08
06_03_0395 - 20354713-20355570 31 0.85
07_01_1179 + 11184521-11184536,11184593-11184691,11184790-111848... 30 1.5
05_01_0167 - 1153778-1153927,1154006-1154797,1155602-1156408,115... 30 1.5
11_06_0326 - 22382001-22383248 29 2.0
06_01_0873 - 6693397-6694038,6694231-6694370,6694713-6694930,669... 29 2.0
09_04_0504 + 18180321-18181013 24 3.4
06_03_0078 + 16291254-16291532,16291654-16291725 29 3.4
07_01_0466 - 3518315-3521428 24 3.8
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369... 28 4.5
07_03_0332 + 16880184-16881017,16881334-16881462,16882685-168827... 28 6.0
03_05_0777 + 27636342-27637115 28 6.0
02_05_0938 + 32901143-32901215,32901841-32901982,32902243-329023... 28 6.0
11_01_0197 + 1554449-1555101,1555462-1555558 27 7.9
08_01_0423 + 3740344-3740408,3740949-3741015,3742110-3742218,374... 27 7.9
>03_06_0016 + 31042619-31042795,31043066-31043170
Length = 93
Score = 56.4 bits (130), Expect = 1e-08
Identities = 28/78 (35%), Positives = 41/78 (52%), Gaps = 1/78 (1%)
Frame = +3
Query: 201 DPRRADRERRYKPPPPTSAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTA-VFCSSIS 377
DPR+ R+Y PP +DL DY L +VF + G+M+R K C+W A +FC+
Sbjct: 19 DPRQPSTARQYTPP---KLSPQDLPIDYAGFLAVVFGVLGVMLRYKVCSWIAIIFCAQSL 75
Query: 378 FANSRVSDDTKQIVSSFM 431
+D KQ+ +FM
Sbjct: 76 VNMKNFENDLKQLSMAFM 93
>06_03_0395 - 20354713-20355570
Length = 285
Score = 30.7 bits (66), Expect = 0.85
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +3
Query: 213 ADRERRYKPPPPTSAPAE 266
ADR RR +PPPPT+ P E
Sbjct: 119 ADRGRRRQPPPPTAPPLE 136
>07_01_1179 +
11184521-11184536,11184593-11184691,11184790-11184852,
11185011-11185084,11185187-11185261,11185371-11185514,
11185629-11185733,11185839-11186276,11187102-11188241,
11188320-11188493
Length = 775
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 87 YAVKM*FKIDKYTVICTIFMKDKIDC*H 4
Y V M ++YT IC +F KD I C H
Sbjct: 492 YLVMMDLDTEEYTCICAMFQKDGILCSH 519
>05_01_0167 -
1153778-1153927,1154006-1154797,1155602-1156408,
1156514-1156618,1156985-1157059,1157160-1157233,
1157388-1157450,1157549-1157647,1157704-1157811,
1157908-1157973,1158073-1158150,1158257-1158304,
1158381-1158440,1158527-1158610,1158902-1158949,
1159049-1159096,1161462-1161579
Length = 940
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -1
Query: 87 YAVKM*FKIDKYTVICTIFMKDKIDC*H 4
Y V M ++YT IC +F KD I C H
Sbjct: 665 YLVMMDLDTEEYTCICAMFQKDGILCSH 692
>11_06_0326 - 22382001-22383248
Length = 415
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +3
Query: 189 QLSADPRRADRERRYKPPPPTSAPA 263
QL+ADP R + R PPPP APA
Sbjct: 252 QLAADPARKSKPR--APPPPPPAPA 274
>06_01_0873 -
6693397-6694038,6694231-6694370,6694713-6694930,
6695040-6695133,6695247-6695483,6696192-6696260,
6696513-6696636
Length = 507
Score = 29.5 bits (63), Expect = 2.0
Identities = 15/49 (30%), Positives = 24/49 (48%)
Frame = +3
Query: 252 SAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSISFANSRVS 398
SA TT YM + G+V + L AW +V + +SF+ S ++
Sbjct: 189 SADCSVFTTSYMVVFGVVQVFFSQLQSLHEVAWLSVLAAVMSFSYSAIA 237
>09_04_0504 + 18180321-18181013
Length = 230
Score = 24.2 bits (50), Expect(2) = 3.4
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 2/22 (9%)
Frame = +3
Query: 204 PRRA--DRERRYKPPPPTSAPA 263
P+R+ + RR PPPP PA
Sbjct: 119 PKRSKNSKRRRVSPPPPQPVPA 140
Score = 23.0 bits (47), Expect(2) = 3.4
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 237 PPPPTSAPAEDL 272
PPPPT+A A D+
Sbjct: 141 PPPPTTADAADV 152
>06_03_0078 + 16291254-16291532,16291654-16291725
Length = 116
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Frame = +3
Query: 129 LIRRVTATNI---CGPIIKSGKMQLSADPRRADRERRYKPPPPT 251
L+RR T+ CGPI + + LS+ R + PPPP+
Sbjct: 18 LLRRFAYTSYSSSCGPIRRHAAVALSSTTTTTTRFAAWSPPPPS 61
>07_01_0466 - 3518315-3521428
Length = 1037
Score = 24.2 bits (50), Expect(2) = 3.8
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 165 PIIKSGKMQLSADPRRADRERRYKPPPPTSAP 260
P++ S + SA+ + + PPPPT P
Sbjct: 218 PVMASEAVAASAEAAPEEEQILTPPPPPTPTP 249
Score = 22.6 bits (46), Expect(2) = 3.8
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 237 PPPPTSAPAEDLTTDYMNILGMVF 308
PPPP AP E D ++ + +F
Sbjct: 263 PPPPPEAPVERSKHDLVDKMPYLF 286
>02_01_0509 +
3694689-3695683,3695799-3695946,3696864-3696943,
3697214-3698062,3698193-3698337,3698426-3698677,
3698780-3699089,3699415-3699524
Length = 962
Score = 28.3 bits (60), Expect = 4.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +3
Query: 192 LSADPRRADRERRYKPPPPTSAPAED 269
L+A PRRA R PPP AP E+
Sbjct: 33 LAAAPRRARSGRHASPPPQRVAPEEE 58
>07_03_0332 +
16880184-16881017,16881334-16881462,16882685-16882750,
16883159-16883224,16884419-16884457,16884858-16885028
Length = 434
Score = 27.9 bits (59), Expect = 6.0
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 237 PPPPTSAPAEDLTTDY 284
PPPP+SAPA + DY
Sbjct: 251 PPPPSSAPARTSSADY 266
>03_05_0777 + 27636342-27637115
Length = 257
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 210 RADRERRYKPPPPTSAPAE 266
RA+ ER +PPPP PAE
Sbjct: 201 RAELERALQPPPPPPPPAE 219
>02_05_0938 +
32901143-32901215,32901841-32901982,32902243-32902314,
32902573-32902644,32902711-32902782,32902913-32902948,
32903001-32903072,32903319-32903387,32903483-32903554,
32903668-32903739,32903838-32903909,32904153-32904224,
32904470-32904541,32904623-32904694,32904782-32904853,
32904911-32905003,32905150-32905218,32905315-32905386,
32905479-32905552,32905643-32905771,32905966-32906331,
32906584-32906954,32907522-32907890
Length = 884
Score = 27.9 bits (59), Expect = 6.0
Identities = 8/39 (20%), Positives = 21/39 (53%)
Frame = +3
Query: 267 DLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSISFA 383
++ + N+ +++ G ++C+W V C +++FA
Sbjct: 30 EIKKSFRNVDNVLYDWAGDGAPRRYCSWRGVLCDNVTFA 68
>11_01_0197 + 1554449-1555101,1555462-1555558
Length = 249
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 216 DRERRYKPPPPTSAPAEDLTT-DYMNIL 296
D E R+ PPP PAED ++ +Y +L
Sbjct: 125 DSEYRHSPPPRPKKPAEDKSSMEYTEVL 152
>08_01_0423 +
3740344-3740408,3740949-3741015,3742110-3742218,
3742320-3742447,3742899-3743324
Length = 264
Score = 27.5 bits (58), Expect = 7.9
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 183 KMQLSADPRRADRERRYKPPPPTSAPAEDL 272
K+Q D +A+R R++ P + APA+D+
Sbjct: 170 KLQQQLDRLKAERARQHHPATSSPAPADDV 199
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,132,131
Number of Sequences: 37544
Number of extensions: 284429
Number of successful extensions: 1390
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1371
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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