Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28f04
(567 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC061912-1|AAH61912.1| 106|Homo sapiens chromosome 19 open read... 166 5e-41
BC042919-1|AAH42919.1| 106|Homo sapiens chromosome 19 open read... 166 5e-41
BC001192-1|AAH01192.1| 104|Homo sapiens C19orf56 protein protein. 166 5e-41
AF151898-1|AAD34135.1| 106|Homo sapiens CGI-140 protein protein. 166 5e-41
AF059620-1|AAG43119.1| 106|Homo sapiens My006 protein protein. 166 5e-41
U73778-1|AAC51244.1| 3063|Homo sapiens collagen type XII alpha-1... 30 4.9
AL354664-1|CAH71310.1| 3063|Homo sapiens collagen type XII alpha... 30 4.9
AL096771-3|CAI19908.1| 3063|Homo sapiens collagen type XII alpha... 30 4.9
AL080250-2|CAI19898.1| 3063|Homo sapiens collagen type XII alpha... 30 4.9
L27440-1|AAC41700.1| 288|Homo sapiens PD-1 protein. 30 6.5
U64863-1|AAC51773.1| 288|Homo sapiens hPD-1 protein. 29 8.6
EF064716-1|ABK41899.1| 288|Homo sapiens programmed cell death 1... 29 8.6
BC074740-1|AAH74740.1| 288|Homo sapiens programmed cell death 1... 29 8.6
AY238517-1|AAO63583.1| 288|Homo sapiens programmed cell death 1... 29 8.6
AF363458-1|AAN64003.1| 288|Homo sapiens programmed cell death 1... 29 8.6
>BC061912-1|AAH61912.1| 106|Homo sapiens chromosome 19 open reading
frame 56 protein.
Length = 106
Score = 166 bits (403), Expect = 5e-41
Identities = 74/100 (74%), Positives = 86/100 (86%), Gaps = 1/100 (1%)
Frame = +3
Query: 198 ADPRRADRERRYKPPPPTSAPA-EDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSI 374
+DPRR ++ RYKPPP PA +D T DYMN+LGM+FSMCGLM++LKWCAW AV+CS I
Sbjct: 7 SDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAVYCSFI 66
Query: 375 SFANSRVSDDTKQIVSSFMLSISAVVMSYLQNPAPMTPPW 494
SFANSR S+DTKQ++SSFMLSISAVVMSYLQNP PMTPPW
Sbjct: 67 SFANSRSSEDTKQMMSSFMLSISAVVMSYLQNPQPMTPPW 106
>BC042919-1|AAH42919.1| 106|Homo sapiens chromosome 19 open reading
frame 56 protein.
Length = 106
Score = 166 bits (403), Expect = 5e-41
Identities = 74/100 (74%), Positives = 86/100 (86%), Gaps = 1/100 (1%)
Frame = +3
Query: 198 ADPRRADRERRYKPPPPTSAPA-EDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSI 374
+DPRR ++ RYKPPP PA +D T DYMN+LGM+FSMCGLM++LKWCAW AV+CS I
Sbjct: 7 SDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAVYCSFI 66
Query: 375 SFANSRVSDDTKQIVSSFMLSISAVVMSYLQNPAPMTPPW 494
SFANSR S+DTKQ++SSFMLSISAVVMSYLQNP PMTPPW
Sbjct: 67 SFANSRSSEDTKQMMSSFMLSISAVVMSYLQNPQPMTPPW 106
>BC001192-1|AAH01192.1| 104|Homo sapiens C19orf56 protein protein.
Length = 104
Score = 166 bits (403), Expect = 5e-41
Identities = 74/100 (74%), Positives = 86/100 (86%), Gaps = 1/100 (1%)
Frame = +3
Query: 198 ADPRRADRERRYKPPPPTSAPA-EDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSI 374
+DPRR ++ RYKPPP PA +D T DYMN+LGM+FSMCGLM++LKWCAW AV+CS I
Sbjct: 5 SDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAVYCSFI 64
Query: 375 SFANSRVSDDTKQIVSSFMLSISAVVMSYLQNPAPMTPPW 494
SFANSR S+DTKQ++SSFMLSISAVVMSYLQNP PMTPPW
Sbjct: 65 SFANSRSSEDTKQMMSSFMLSISAVVMSYLQNPQPMTPPW 104
>AF151898-1|AAD34135.1| 106|Homo sapiens CGI-140 protein protein.
Length = 106
Score = 166 bits (403), Expect = 5e-41
Identities = 74/100 (74%), Positives = 86/100 (86%), Gaps = 1/100 (1%)
Frame = +3
Query: 198 ADPRRADRERRYKPPPPTSAPA-EDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSI 374
+DPRR ++ RYKPPP PA +D T DYMN+LGM+FSMCGLM++LKWCAW AV+CS I
Sbjct: 7 SDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAVYCSFI 66
Query: 375 SFANSRVSDDTKQIVSSFMLSISAVVMSYLQNPAPMTPPW 494
SFANSR S+DTKQ++SSFMLSISAVVMSYLQNP PMTPPW
Sbjct: 67 SFANSRSSEDTKQMMSSFMLSISAVVMSYLQNPQPMTPPW 106
>AF059620-1|AAG43119.1| 106|Homo sapiens My006 protein protein.
Length = 106
Score = 166 bits (403), Expect = 5e-41
Identities = 74/100 (74%), Positives = 86/100 (86%), Gaps = 1/100 (1%)
Frame = +3
Query: 198 ADPRRADRERRYKPPPPTSAPA-EDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSI 374
+DPRR ++ RYKPPP PA +D T DYMN+LGM+FSMCGLM++LKWCAW AV+CS I
Sbjct: 7 SDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAVYCSFI 66
Query: 375 SFANSRVSDDTKQIVSSFMLSISAVVMSYLQNPAPMTPPW 494
SFANSR S+DTKQ++SSFMLSISAVVMSYLQNP PMTPPW
Sbjct: 67 SFANSRSSEDTKQMMSSFMLSISAVVMSYLQNPQPMTPPW 106
>U73778-1|AAC51244.1| 3063|Homo sapiens collagen type XII alpha-1
protein.
Length = 3063
Score = 30.3 bits (65), Expect = 4.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 123 YSLIRRVTATNICGPIIKSGKMQLSADPRRADRERRYKPPPPTSAPAEDL 272
Y + V N+ GP + S K + P A E PPPPT PA D+
Sbjct: 2268 YGVTVFVQTPNLEGPGV-SVKEHTTVKPTEAPTEPPTPPPPPTIPPARDV 2316
>AL354664-1|CAH71310.1| 3063|Homo sapiens collagen type XII alpha 1
protein.
Length = 3063
Score = 30.3 bits (65), Expect = 4.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 123 YSLIRRVTATNICGPIIKSGKMQLSADPRRADRERRYKPPPPTSAPAEDL 272
Y + V N+ GP + S K + P A E PPPPT PA D+
Sbjct: 2268 YGVTVFVQTPNLEGPGV-SVKEHTTVKPTEAPTEPPTPPPPPTIPPARDV 2316
>AL096771-3|CAI19908.1| 3063|Homo sapiens collagen type XII alpha 1
protein.
Length = 3063
Score = 30.3 bits (65), Expect = 4.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 123 YSLIRRVTATNICGPIIKSGKMQLSADPRRADRERRYKPPPPTSAPAEDL 272
Y + V N+ GP + S K + P A E PPPPT PA D+
Sbjct: 2268 YGVTVFVQTPNLEGPGV-SVKEHTTVKPTEAPTEPPTPPPPPTIPPARDV 2316
>AL080250-2|CAI19898.1| 3063|Homo sapiens collagen type XII alpha 1
protein.
Length = 3063
Score = 30.3 bits (65), Expect = 4.9
Identities = 18/50 (36%), Positives = 23/50 (46%)
Frame = +3
Query: 123 YSLIRRVTATNICGPIIKSGKMQLSADPRRADRERRYKPPPPTSAPAEDL 272
Y + V N+ GP + S K + P A E PPPPT PA D+
Sbjct: 2268 YGVTVFVQTPNLEGPGV-SVKEHTTVKPTEAPTEPPTPPPPPTIPPARDV 2316
>L27440-1|AAC41700.1| 288|Homo sapiens PD-1 protein.
Length = 288
Score = 29.9 bits (64), Expect = 6.5
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 135 RRVTATNICGPIIKSGKMQLSADPRRADR--ERRYKPPPPTSAPAEDLTTDYMN-ILGMV 305
R + T +CG I + K Q+ R R ERR + P +P+ + ++G+V
Sbjct: 115 RNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRSAGQFQTLVVGVV 174
Query: 306 FSMCGLMMRLKWCAWTAVFCS 368
+ G ++ L W AV CS
Sbjct: 175 GGLLGSLVLLVWV--LAVICS 193
>U64863-1|AAC51773.1| 288|Homo sapiens hPD-1 protein.
Length = 288
Score = 29.5 bits (63), Expect = 8.6
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 135 RRVTATNICGPIIKSGKMQLSADPRRADR--ERRYKPPPPTSAPAEDLTTDYMN-ILGMV 305
R + T +CG I + K Q+ R R ERR + P +P+ + ++G+V
Sbjct: 115 RNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVV 174
Query: 306 FSMCGLMMRLKWCAWTAVFCS 368
+ G ++ L W AV CS
Sbjct: 175 GGLLGSLVLLVWV--LAVICS 193
>EF064716-1|ABK41899.1| 288|Homo sapiens programmed cell death 1
protein.
Length = 288
Score = 29.5 bits (63), Expect = 8.6
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 135 RRVTATNICGPIIKSGKMQLSADPRRADR--ERRYKPPPPTSAPAEDLTTDYMN-ILGMV 305
R + T +CG I + K Q+ R R ERR + P +P+ + ++G+V
Sbjct: 115 RNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVV 174
Query: 306 FSMCGLMMRLKWCAWTAVFCS 368
+ G ++ L W AV CS
Sbjct: 175 GGLLGSLVLLVWV--LAVICS 193
>BC074740-1|AAH74740.1| 288|Homo sapiens programmed cell death 1
protein.
Length = 288
Score = 29.5 bits (63), Expect = 8.6
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 135 RRVTATNICGPIIKSGKMQLSADPRRADR--ERRYKPPPPTSAPAEDLTTDYMN-ILGMV 305
R + T +CG I + K Q+ R R ERR + P +P+ + ++G+V
Sbjct: 115 RNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVV 174
Query: 306 FSMCGLMMRLKWCAWTAVFCS 368
+ G ++ L W AV CS
Sbjct: 175 GGLLGSLVLLVWV--LAVICS 193
>AY238517-1|AAO63583.1| 288|Homo sapiens programmed cell death 1
protein.
Length = 288
Score = 29.5 bits (63), Expect = 8.6
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 135 RRVTATNICGPIIKSGKMQLSADPRRADR--ERRYKPPPPTSAPAEDLTTDYMN-ILGMV 305
R + T +CG I + K Q+ R R ERR + P +P+ + ++G+V
Sbjct: 115 RNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVV 174
Query: 306 FSMCGLMMRLKWCAWTAVFCS 368
+ G ++ L W AV CS
Sbjct: 175 GGLLGSLVLLVWV--LAVICS 193
>AF363458-1|AAN64003.1| 288|Homo sapiens programmed cell death 1
protein.
Length = 288
Score = 29.5 bits (63), Expect = 8.6
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Frame = +3
Query: 135 RRVTATNICGPIIKSGKMQLSADPRRADR--ERRYKPPPPTSAPAEDLTTDYMN-ILGMV 305
R + T +CG I + K Q+ R R ERR + P +P+ + ++G+V
Sbjct: 115 RNDSGTYLCGAISLAPKAQIKESLRAELRVTERRAEVPTAHPSPSPRPAGQFQTLVVGVV 174
Query: 306 FSMCGLMMRLKWCAWTAVFCS 368
+ G ++ L W AV CS
Sbjct: 175 GGLLGSLVLLVWV--LAVICS 193
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,455,325
Number of Sequences: 237096
Number of extensions: 1666851
Number of successful extensions: 5540
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5508
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5759818212
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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