Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28f04
(567 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U28730-1|AAA68261.1| 113|Caenorhabditis elegans Hypothetical pr... 154 5e-38
Z99942-5|CAI79198.1| 178|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z99942-4|CAB17069.1| 541|Caenorhabditis elegans Hypothetical pr... 29 1.8
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr... 29 2.3
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil... 29 2.3
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical... 29 2.3
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical pr... 28 5.4
U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical pr... 28 5.4
U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr... 28 5.4
AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromat... 28 5.4
Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical pr... 27 9.4
U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human nie... 27 9.4
AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protei... 27 9.4
>U28730-1|AAA68261.1| 113|Caenorhabditis elegans Hypothetical
protein K10B2.4 protein.
Length = 113
Score = 154 bits (373), Expect = 5e-38
Identities = 71/110 (64%), Positives = 86/110 (78%), Gaps = 4/110 (3%)
Frame = +3
Query: 186 MQLSADPRRADRERRYKPPPPTS----APAEDLTTDYMNILGMVFSMCGLMMRLKWCAWT 353
MQ + DPRR +R RYKP T+ A +ED +YMN+LGM+FSMCGLM+R+KWC+W
Sbjct: 1 MQQNGDPRRTNRIVRYKPLDSTANQQQAISEDPLPEYMNVLGMIFSMCGLMIRMKWCSWL 60
Query: 354 AVFCSSISFANSRVSDDTKQIVSSFMLSISAVVMSYLQNPAPMTPPWAAL 503
A+ CS ISFAN+R SDD KQIVSSFMLS+SAVVMSYLQNP+P+ PPW L
Sbjct: 61 ALVCSCISFANTRTSDDAKQIVSSFMLSVSAVVMSYLQNPSPIIPPWVTL 110
>Z99942-5|CAI79198.1| 178|Caenorhabditis elegans Hypothetical
protein H13N06.4b protein.
Length = 178
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -3
Query: 541 NRNYMFILYYHVVRAAQGGVIGAGF*RYDITTAEMDNMKELTICLVSSETLEFAK 377
N N+ + Y ++ AA GV+G ++ + TA++D+ K+ T+ E L+ K
Sbjct: 32 NENHSYYKYAYIGGAATAGVLGF---KHFVKTAKLDHAKDETMSEKKLENLQIYK 83
>Z99942-4|CAB17069.1| 541|Caenorhabditis elegans Hypothetical
protein H13N06.4a protein.
Length = 541
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/55 (29%), Positives = 30/55 (54%)
Frame = -3
Query: 541 NRNYMFILYYHVVRAAQGGVIGAGF*RYDITTAEMDNMKELTICLVSSETLEFAK 377
N N+ + Y ++ AA GV+G ++ + TA++D+ K+ T+ E L+ K
Sbjct: 32 NENHSYYKYAYIGGAATAGVLGF---KHFVKTAKLDHAKDETMSEKKLENLQIYK 83
>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical protein
F57C7.4 protein.
Length = 1484
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/66 (27%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Frame = +3
Query: 81 LHKTEEQITKLTQIYSLIRRVTATNICGPI---IKSGKMQLSADPRRAD-RERRYKPPPP 248
LH+T + L + S+I + ICG + +++ K+ + + RRA+ E +++ PPP
Sbjct: 1398 LHETNSLMIALAVVLSVILGLGTIFICGAVMVKLRTDKL-IVEERRRANLNEHQFQLPPP 1456
Query: 249 TSAPAE 266
P +
Sbjct: 1457 PEYPVD 1462
>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
ATPase protein.
Length = 2395
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 93 EEQITKLTQIYSLIRRVTATNICGPIIKSGKMQ-LSADPRRADRERRYKPPPPTSAP 260
EEQI + +I ++ ++ II +G ++ + DPR A K PPPT AP
Sbjct: 107 EEQIARAQRIQPVVDQIQRVE---QIILNGSVEDILKDPRFAVMADLTKEPPPTPAP 160
>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
protein Y111B2A.22 protein.
Length = 2395
Score = 29.1 bits (62), Expect = 2.3
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 93 EEQITKLTQIYSLIRRVTATNICGPIIKSGKMQ-LSADPRRADRERRYKPPPPTSAP 260
EEQI + +I ++ ++ II +G ++ + DPR A K PPPT AP
Sbjct: 107 EEQIARAQRIQPVVDQIQRVE---QIILNGSVEDILKDPRFAVMADLTKEPPPTPAP 160
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
K10C2.1 protein.
Length = 2314
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = +3
Query: 201 DPRRADRERRYKPPPPTSAPAEDLTTDYMNILGMVFS 311
D R ER PPPPT A+D T N+ G+ F+
Sbjct: 1111 DTVRQPTERDAPPPPPTQTKAQDEVT---NLPGLTFT 1144
>Z70210-6|CAA94152.1| 184|Caenorhabditis elegans Hypothetical
protein K08H2.6 protein.
Length = 184
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 207 RRADRERRYKPPPPTSAPAE 266
+R R+RRY P P TS+ AE
Sbjct: 89 KRTTRKRRYSPQPSTSSSAE 108
>U80846-4|AAC70889.1| 1032|Caenorhabditis elegans Hypothetical
protein K06A9.1a protein.
Length = 1032
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 366 SSISFANSRVSDDTKQIVSSFMLSISAVVMSYLQNPAPMT 485
+S SF +R D K +SS S +VMSY P+P T
Sbjct: 69 TSCSFDANR--DQLKNFLSSSAADTSFIVMSYSDKPSPST 106
>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical
protein K06A9.1b protein.
Length = 2232
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 366 SSISFANSRVSDDTKQIVSSFMLSISAVVMSYLQNPAPMT 485
+S SF +R D K +SS S +VMSY P+P T
Sbjct: 69 TSCSFDANR--DQLKNFLSSSAADTSFIVMSYSDKPSPST 106
>AF056580-1|AAC78602.1| 184|Caenorhabditis elegans heterochromatin
protein 1 homolog protein.
Length = 184
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 207 RRADRERRYKPPPPTSAPAE 266
+R R+RRY P P TS+ AE
Sbjct: 89 KRTTRKRRYSPQPSTSSSAE 108
>Z22178-3|CAA80159.3| 1027|Caenorhabditis elegans Hypothetical
protein F54C8.3 protein.
Length = 1027
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 67 KLHFNCIKQKNKLQNLPKF 123
KLH+NC+++K + NL +F
Sbjct: 119 KLHWNCVREKPFISNLGEF 137
>U53340-7|AAA96211.2| 1383|Caenorhabditis elegans Npc1 (human
niemann pick c disease)related protein 1 protein.
Length = 1383
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +3
Query: 246 PTSAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSISFANSRVSDDTK 410
P P D +T YMN+ F+ C R+ W A + C+ +AN DD K
Sbjct: 216 PIKTPPSDRST-YMNVN---FTGCDKSARVGWPACSTSECNKEEYANLIDLDDGK 266
>AF192400-1|AAF24233.1| 1027|Caenorhabditis elegans emb-30 protein
protein.
Length = 1027
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +1
Query: 67 KLHFNCIKQKNKLQNLPKF 123
KLH+NC+++K + NL +F
Sbjct: 119 KLHWNCVREKPFISNLGEF 137
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,887,960
Number of Sequences: 27780
Number of extensions: 264377
Number of successful extensions: 983
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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