Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28f01
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...   134   1e-32
SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...    29   0.49 
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz...    27   2.6  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    27   2.6  
SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.5  
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   4.6  
SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatas...    26   6.0  
SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    25   8.0  

>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score =  134 bits (324), Expect = 1e-32
 Identities = 59/152 (38%), Positives = 95/152 (62%), Gaps = 3/152 (1%)
 Frame = +2

Query: 257 SMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQL---GKAKIGGSFELVNSEGKLVKSA 427
           S+ A ++          Y + EK++ L+R+  K L   G+ ++GG+F L++  G  V   
Sbjct: 55  SIRALLLAAATSVGLYAYFQHEKKKVLERQNDKVLATIGRPQLGGAFSLIDHHGNRVTDN 114

Query: 428 DFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQRDTPELV 607
           DF GK+ LIYFGFT CPDICPDEL+K++  +D+         + P+FI+ DP RD P+ +
Sbjct: 115 DFKGKFSLIYFGFTRCPDICPDELDKMSAAIDIVNNVVGD-VVYPIFITCDPARDPPQEM 173

Query: 608 GKYCKEFTPRLLGLTGTKEQVQQACKSYXVYF 703
            +Y ++F P+++GLTG+ E+++  CK + VYF
Sbjct: 174 AEYLEDFNPKIVGLTGSYEEIKDICKKFRVYF 205


>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +2

Query: 392 LVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAE 514
           +VN   + +K AD+ GKW+ + F       +CP E+   +E
Sbjct: 17  VVNGAFEEIKLADYKGKWVFLGFYPLDFTFVCPTEIVAFSE 57


>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
           Fub2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 628

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = +2

Query: 431 FLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSP 550
           FLG+  +I  G T C D  P E  K   V  +   TPS P
Sbjct: 152 FLGQVQVIIHGKTECYDCNPKEPPKTYPVCTIR-STPSQP 190


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 527 HGKTPSSPPLQPVFISVDPQRDTPELVG 610
           H  TPSSP +   F+SV P    P+  G
Sbjct: 120 HVATPSSPTISNSFVSVSPLLKRPQQKG 147


>SPBC409.11 |meu18||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 553

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +2

Query: 557 QPVFISVDPQRDTPELVGKYCKEFTPRLLGLTGTKEQVQQACKS 688
           QP FI +D   +  E + K  KE++ + L +T TKE  +  C +
Sbjct: 232 QPGFIQLDIASNLQE-IKKGTKEYSLKSLEMTTTKESNETLCSN 274


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 152 NRVSFVFRALSTTPVRQCAVPPKRTPKT 235
           N V F  R L +TP RQ   P   TP T
Sbjct: 122 NPVPFATRLLQSTPHRQLFPPTPSTPST 149


>SPBC776.02c |dis2|sds1, bws1|serine/threonine protein phosphatase
           PP1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
 Frame = +1

Query: 238 YADNMEV-NGSNRC-SWRRLDGFYDVCQKR 321
           Y +N  +  G++ C S  R+ GFYD C++R
Sbjct: 113 YPENFFILRGNHECASINRIYGFYDECKRR 142


>SPAC6G9.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 681

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 19/69 (27%), Positives = 34/69 (49%)
 Frame = -3

Query: 684 LQACWTCSFVPVKPNNLGVNSLQYLPTNSGVSL*GSTDMKTGCKGGDDGVLPCKSTTSAN 505
           LQ   T   +P+     G++S    P+ S  S+  S+++     GG+ G++    + S N
Sbjct: 165 LQMNTTLDDIPILLRRPGLSSYTPGPSTSRRSISSSSNL-----GGNPGLIANNPSASKN 219

Query: 504 FSNSSGQIS 478
           F+ +SG  S
Sbjct: 220 FAFTSGSSS 228


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,871,931
Number of Sequences: 5004
Number of extensions: 60616
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)