Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28f01
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0449 - 3229260-3229365,3230264-3230396,3230536-3230625,323... 152 2e-37
09_03_0087 - 12237226-12237346,12237423-12237555,12237641-122377... 118 6e-27
05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760 32 0.51
04_04_1095 - 30839573-30839769,30839817-30839964,30840421-308409... 32 0.51
01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897 30 2.1
08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202 29 3.6
07_01_0838 - 6811525-6812364,6813085-6813211,6813321-6813670 28 8.3
04_04_0088 + 22723308-22724480 28 8.3
03_04_0013 + 16436438-16436536,16437257-16437742,16437791-164378... 28 8.3
01_06_0595 - 30485460-30486097,30486721-30487179,30487339-304875... 28 8.3
>02_01_0449 -
3229260-3229365,3230264-3230396,3230536-3230625,
3231097-3231309,3232317-3232407,3232519-3232707,
3232810-3232920,3233018-3233110
Length = 341
Score = 152 bits (369), Expect = 2e-37
Identities = 72/159 (45%), Positives = 100/159 (62%), Gaps = 5/159 (3%)
Frame = +2
Query: 242 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDR-----ERKKQLGKAKIGGSFELVNSE 406
P++W S +V GGG+ + KK E L +++ +G A IGG F L+N +
Sbjct: 132 PVSWLSFLLLLVTGGGIIVYYDKEKKRHIEELKNRTSAVKQEPSVGTAAIGGPFNLLNHD 191
Query: 407 GKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQ 586
GK V DF GKW L+YFGFTHCPDICPDEL+K+A +D K + + PVFI+VDP+
Sbjct: 192 GKPVTQKDFFGKWTLLYFGFTHCPDICPDELQKMALAID-KIKEKAKMEVVPVFITVDPE 250
Query: 587 RDTPELVGKYCKEFTPRLLGLTGTKEQVQQACKSYXVYF 703
RDT E V Y EF P L+GLTGT +++++ ++Y VY+
Sbjct: 251 RDTVEQVRDYVNEFHPNLIGLTGTTDEIRKVARAYRVYY 289
>09_03_0087 -
12237226-12237346,12237423-12237555,12237641-12237730,
12238992-12239198,12239738-12239813,12240019-12240148,
12241024-12241121
Length = 284
Score = 118 bits (283), Expect = 6e-27
Identities = 64/176 (36%), Positives = 103/176 (58%), Gaps = 5/176 (2%)
Frame = +2
Query: 191 PVRQCAVPPKRTPKTLMPITWKSMAATVVVGGGLTAFMMYVKKEK---QEALDRERKKQL 361
P+RQ A + P+ P+ + + + ++V GL F+ Y +++ QEA K+
Sbjct: 56 PMRQFAEENEANPQ---PLIYYVVPSALLVFAGLVTFVHYNDEKRAVTQEAQQTSVPKRC 112
Query: 362 --GKAKIGGSFELVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHGK 535
+ IGG F+L ++E K V + G W L+YFG+T CPDI P E++K+A+VV L +
Sbjct: 113 TTNRPAIGGPFKLYDTENKEVTESKLRGNWTLMYFGYTSCPDIGPAEVQKMADVVKLL-E 171
Query: 536 TPSSPPLQPVFISVDPQRDTPELVGKYCKEFTPRLLGLTGTKEQVQQACKSYXVYF 703
+ + P+FI++DPQRD+P + Y EF PR++GLTG+ V+Q + Y V+F
Sbjct: 172 SKYGTKITPLFITIDPQRDSPAQLKAYLSEFDPRIIGLTGSINAVRQIAQEYRVFF 227
>05_07_0045 - 27304696-27305299,27305392-27305521,27305625-27305760
Length = 289
Score = 31.9 bits (69), Expect = 0.51
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = -3
Query: 408 PSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTT 274
PS+ TSS + P + S S S +CF+ + PPPTT
Sbjct: 130 PSQCTSSAMAPALSPASSSVTSSSGDACFAAAATTTTTMYPPPTT 174
>04_04_1095 -
30839573-30839769,30839817-30839964,30840421-30840903,
30841419-30841910,30842267-30842362
Length = 471
Score = 31.9 bits (69), Expect = 0.51
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Frame = +2
Query: 263 AATVVVGGGLTAFMMYVKKEKQ-EALDRERKKQLGKAKIGGSFE---LVNSEGKLVKSAD 430
A +V G+ A+ K+ + E +D R++ ++ G E +++++G +D
Sbjct: 142 AVKLVEEYGVDAYPFGAKRRSELEGMDDARRQGGNLLQLLGCKEREYVISADGIKTPISD 201
Query: 431 FLGKWMLIYFGFTHCPDICPDELEKLAEVVD-LHGKTPSSPPLQPVFISVD 580
GK + +YFG CP C ++L E D L P + Q +FIS+D
Sbjct: 202 LNGKTIGLYFGAHWCPP-CRAFTKQLREAYDELKALRPGN--FQVIFISMD 249
>01_06_1551 - 38200370-38201061,38202071-38202109,38203967-38204897
Length = 553
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/53 (26%), Positives = 30/53 (56%)
Frame = -3
Query: 429 SALLTNLPSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTTT 271
SAL +P ++++ + A S L+ ++ +C +FL++ + PPP+T+
Sbjct: 81 SALRARIPPAVSTAR--SVLAASSNVNLTNAATNCLTFLSFSTHRLSPPPSTS 131
>08_01_0675 - 5840867-5841253,5842699-5842997,5844022-5844202
Length = 288
Score = 29.1 bits (62), Expect = 3.6
Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Frame = +2
Query: 362 GKAKIGGSFELVNSEGKLVKSADFLGK-WML---IYFGFTHCPDICPDELEKLAEVVDLH 529
G+A G E V E +L L + W+L Y P +E L +DL
Sbjct: 135 GRAPKGRKTEWVMHEFRLEPQPLHLKEDWVLCRVFYKTRQTIPSPSSEEAVTLPNELDLP 194
Query: 530 GKTPSSPPLQPVFISVD-PQRDTPELVGKY 616
TPS PPL +I+ D TP +VG Y
Sbjct: 195 A-TPSLPPLIDAYIAFDSAPTTTPSMVGSY 223
>07_01_0838 - 6811525-6812364,6813085-6813211,6813321-6813670
Length = 438
Score = 27.9 bits (59), Expect = 8.3
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 527 HGKTPSSPPLQPVFISVDPQRDTPEL 604
+G+ P+ P+QP IS +DTP+L
Sbjct: 333 YGRLPAPAPVQPHGISTQELQDTPQL 358
>04_04_0088 + 22723308-22724480
Length = 390
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/68 (26%), Positives = 36/68 (52%)
Frame = +2
Query: 389 ELVNSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVF 568
++++ EG+ + D L +L++ T P++ L +L ++ ++G+ L +
Sbjct: 196 KVLSVEGRSIAWVD-LWNGILLFDSVTSNPEV---RLIQLPPLMPINGRYLRGGGLDDTY 251
Query: 569 ISVDPQRD 592
ISVDP RD
Sbjct: 252 ISVDPNRD 259
>03_04_0013 +
16436438-16436536,16437257-16437742,16437791-16437826,
16437835-16438323,16438951-16439622
Length = 593
Score = 27.9 bits (59), Expect = 8.3
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
Frame = +2
Query: 326 QEALDRERKKQLGKAKIGGSFELV-NSEGKLVKSADFLGKWMLIYFGFTHCPDICPDELE 502
++A + + L + G + V +G V ++ +GK +L+YF CP C L
Sbjct: 340 EKAKAKAESQTLESLLVTGDLDFVLGKDGAKVPVSELVGKTVLLYFSAKWCPP-CRAFLP 398
Query: 503 KLAEVVDLHGKTPSSPPLQPVFISVDPQRDT 595
KL V + + + VFIS D ++ +
Sbjct: 399 KL--VNEYNKIKEKHNDFEIVFISSDREQSS 427
>01_06_0595 -
30485460-30486097,30486721-30487179,30487339-30487558,
30488229-30489980
Length = 1022
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +2
Query: 491 DELEKL-AEVVDLHGKTPSSPPLQPVFISVDPQRDTPELVGKYCKEF 628
D+ + L A+ L K P + VFI V P D P ++ C++F
Sbjct: 472 DDCDTLPADTWSLISKVVDRAPRRVVFILVSPNLDLPHIILSRCQKF 518
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,628,273
Number of Sequences: 37544
Number of extensions: 397196
Number of successful extensions: 1171
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1166
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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