Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28f01
(704 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC015504-1|AAH15504.1| 301|Homo sapiens SCO cytochrome oxidase ... 192 1e-48
AF295386-1|AAG23836.1| 301|Homo sapiens cytochrome oxidase defi... 192 1e-48
AF183424-1|AAG09693.1| 301|Homo sapiens SCO1/2 protein protein. 192 1e-48
AF026852-1|AAD08641.1| 301|Homo sapiens h-sco1 protein. 192 1e-48
AF131816-1|AAD20051.1| 190|Homo sapiens h-sco1 protein. 168 1e-41
CR456569-1|CAG30455.1| 266|Homo sapiens SCO2 protein. 154 3e-37
BC102025-1|AAI02026.1| 266|Homo sapiens SCO cytochrome oxidase ... 154 3e-37
BC102024-1|AAI02025.1| 266|Homo sapiens cytochrome oxidase defi... 154 3e-37
AL021683-1|CAA16671.1| 266|Homo sapiens protein ( Homo sapiens ... 154 3e-37
AF177385-1|AAF05313.1| 266|Homo sapiens cytochrome c oxidase as... 154 3e-37
AK002043-1|BAA92051.1| 122|Homo sapiens protein ( Homo sapiens ... 31 3.0
AY260762-1|AAP20225.1| 3567|Homo sapiens zinc finger homeodomain... 31 4.0
AB083343-1|BAE96598.1| 3599|Homo sapiens zinc-finger homeodomain... 31 4.0
BC021101-1|AAH21101.1| 651|Homo sapiens cofactor required for S... 31 5.3
AK001674-1|BAA91827.1| 651|Homo sapiens protein ( Homo sapiens ... 31 5.3
AF117657-1|AAD22031.2| 651|Homo sapiens thyroid hormone recepto... 31 5.3
AF105421-1|AAD30856.1| 652|Homo sapiens vitamin D3 receptor int... 31 5.3
AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3 pr... 30 9.3
AB001025-1|BAA23795.1| 4866|Homo sapiens brain ryanodine recepto... 30 9.3
>BC015504-1|AAH15504.1| 301|Homo sapiens SCO cytochrome oxidase
deficient homolog 1 (yeast) protein.
Length = 301
Score = 192 bits (468), Expect = 1e-48
Identities = 80/154 (51%), Positives = 112/154 (72%)
Frame = +2
Query: 242 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVK 421
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L G+
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151
Query: 422 SADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQRDTPE 601
D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD + P L P+FIS+DP+RDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211
Query: 602 LVGKYCKEFTPRLLGLTGTKEQVQQACKSYXVYF 703
+ Y KEF+P+L+GLTGT+E+V Q ++Y VY+
Sbjct: 212 AIANYVKEFSPKLVGLTGTREEVDQVARAYRVYY 245
>AF295386-1|AAG23836.1| 301|Homo sapiens cytochrome oxidase
deficient in yeast homolog 1 protein.
Length = 301
Score = 192 bits (468), Expect = 1e-48
Identities = 80/154 (51%), Positives = 112/154 (72%)
Frame = +2
Query: 242 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVK 421
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L G+
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151
Query: 422 SADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQRDTPE 601
D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD + P L P+FIS+DP+RDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211
Query: 602 LVGKYCKEFTPRLLGLTGTKEQVQQACKSYXVYF 703
+ Y KEF+P+L+GLTGT+E+V Q ++Y VY+
Sbjct: 212 AIANYVKEFSPKLVGLTGTREEVDQVARAYRVYY 245
>AF183424-1|AAG09693.1| 301|Homo sapiens SCO1/2 protein protein.
Length = 301
Score = 192 bits (468), Expect = 1e-48
Identities = 80/154 (51%), Positives = 112/154 (72%)
Frame = +2
Query: 242 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVK 421
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L G+
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151
Query: 422 SADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQRDTPE 601
D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD + P L P+FIS+DP+RDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211
Query: 602 LVGKYCKEFTPRLLGLTGTKEQVQQACKSYXVYF 703
+ Y KEF+P+L+GLTGT+E+V Q ++Y VY+
Sbjct: 212 AIANYVKEFSPKLVGLTGTREEVDQVARAYRVYY 245
>AF026852-1|AAD08641.1| 301|Homo sapiens h-sco1 protein.
Length = 301
Score = 192 bits (468), Expect = 1e-48
Identities = 80/154 (51%), Positives = 112/154 (72%)
Frame = +2
Query: 242 PITWKSMAATVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVK 421
P++WKS+A T +GG L A M +VKKEK E L++ER++ +GK +GG F L G+
Sbjct: 92 PVSWKSLAITFAIGGALLAGMKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKT 151
Query: 422 SADFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQRDTPE 601
D+LG+W+LIYFGFTHCPD+CP+ELEK+ +VVD + P L P+FIS+DP+RDT E
Sbjct: 152 DKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKE 211
Query: 602 LVGKYCKEFTPRLLGLTGTKEQVQQACKSYXVYF 703
+ Y KEF+P+L+GLTGT+E+V Q ++Y VY+
Sbjct: 212 AIANYVKEFSPKLVGLTGTREEVDQVARAYRVYY 245
>AF131816-1|AAD20051.1| 190|Homo sapiens h-sco1 protein.
Length = 190
Score = 168 bits (409), Expect = 1e-41
Identities = 70/134 (52%), Positives = 98/134 (73%)
Frame = +2
Query: 302 MMYVKKEKQEALDRERKKQLGKAKIGGSFELVNSEGKLVKSADFLGKWMLIYFGFTHCPD 481
M +VKKEK E L++ER++ +GK +GG F L G+ D+LG+W+LIYFGFTHCPD
Sbjct: 1 MKHVKKEKAEKLEKERQRHIGKPLLGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPD 60
Query: 482 ICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQRDTPELVGKYCKEFTPRLLGLTGTK 661
+CP+ELEK+ +VVD + P L P+FIS+DP+RDT E + Y KEF+P+L+GLTGT+
Sbjct: 61 VCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTR 120
Query: 662 EQVQQACKSYXVYF 703
E+V Q ++Y VY+
Sbjct: 121 EEVDQVARAYRVYY 134
>CR456569-1|CAG30455.1| 266|Homo sapiens SCO2 protein.
Length = 266
Score = 154 bits (373), Expect = 3e-37
Identities = 72/146 (49%), Positives = 99/146 (67%), Gaps = 1/146 (0%)
Frame = +2
Query: 269 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 445
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 446 MLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQRDTPELVGKYCKE 625
+L+YFGFTHCPDICPDELEKL +VV P PP+QPVFI+VDP+RD E + +Y ++
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQD 183
Query: 626 FTPRLLGLTGTKEQVQQACKSYXVYF 703
F PRLLGLTG+ +QV QA SY VY+
Sbjct: 184 FHPRLLGLTGSTKQVAQASHSYRVYY 209
>BC102025-1|AAI02026.1| 266|Homo sapiens SCO cytochrome oxidase
deficient homolog 2 (yeast) protein.
Length = 266
Score = 154 bits (373), Expect = 3e-37
Identities = 72/146 (49%), Positives = 99/146 (67%), Gaps = 1/146 (0%)
Frame = +2
Query: 269 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 445
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 446 MLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQRDTPELVGKYCKE 625
+L+YFGFTHCPDICPDELEKL +VV P PP+QPVFI+VDP+RD E + +Y ++
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQD 183
Query: 626 FTPRLLGLTGTKEQVQQACKSYXVYF 703
F PRLLGLTG+ +QV QA SY VY+
Sbjct: 184 FHPRLLGLTGSTKQVAQASHSYRVYY 209
>BC102024-1|AAI02025.1| 266|Homo sapiens cytochrome oxidase
deficient homolog 2 protein.
Length = 266
Score = 154 bits (373), Expect = 3e-37
Identities = 72/146 (49%), Positives = 99/146 (67%), Gaps = 1/146 (0%)
Frame = +2
Query: 269 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 445
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 446 MLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQRDTPELVGKYCKE 625
+L+YFGFTHCPDICPDELEKL +VV P PP+QPVFI+VDP+RD E + +Y ++
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQD 183
Query: 626 FTPRLLGLTGTKEQVQQACKSYXVYF 703
F PRLLGLTG+ +QV QA SY VY+
Sbjct: 184 FHPRLLGLTGSTKQVAQASHSYRVYY 209
>AL021683-1|CAA16671.1| 266|Homo sapiens protein ( Homo sapiens
cDNA homologous to Yeast SCO1 & SCO2 genes and
C.elegans C01F1.2 gene. ).
Length = 266
Score = 154 bits (373), Expect = 3e-37
Identities = 72/146 (49%), Positives = 99/146 (67%), Gaps = 1/146 (0%)
Frame = +2
Query: 269 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 445
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 446 MLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQRDTPELVGKYCKE 625
+L+YFGFTHCPDICPDELEKL +VV P PP+QPVFI+VDP+RD E + +Y ++
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQD 183
Query: 626 FTPRLLGLTGTKEQVQQACKSYXVYF 703
F PRLLGLTG+ +QV QA SY VY+
Sbjct: 184 FHPRLLGLTGSTKQVAQASHSYRVYY 209
>AF177385-1|AAF05313.1| 266|Homo sapiens cytochrome c oxidase
assembly protein isoform 2 protein.
Length = 266
Score = 154 bits (373), Expect = 3e-37
Identities = 72/146 (49%), Positives = 99/146 (67%), Gaps = 1/146 (0%)
Frame = +2
Query: 269 TVVVGGGLTAFMMYVKKEKQEALDRERKKQLGKAKIG-GSFELVNSEGKLVKSADFLGKW 445
T + G GL + ++ EK+ ++R + L +A +G G F L++ G+ ADF G+W
Sbjct: 64 TGLFGAGLGGAWLALRAEKERLQQQKRTEALRQAAVGQGDFHLLDHRGRARCKADFRGQW 123
Query: 446 MLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQRDTPELVGKYCKE 625
+L+YFGFTHCPDICPDELEKL +VV P PP+QPVFI+VDP+RD E + +Y ++
Sbjct: 124 VLMYFGFTHCPDICPDELEKLVQVVRQLEAEPGLPPVQPVFITVDPERDDVEAMARYVQD 183
Query: 626 FTPRLLGLTGTKEQVQQACKSYXVYF 703
F PRLLGLTG+ +QV QA SY VY+
Sbjct: 184 FHPRLLGLTGSTKQVAQASHSYRVYY 209
>AK002043-1|BAA92051.1| 122|Homo sapiens protein ( Homo sapiens
cDNA FLJ11181 fis, clone PLACE1007460. ).
Length = 122
Score = 31.5 bits (68), Expect = 3.0
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Frame = -3
Query: 450 NIHFPKKSAL-LTNLPSEFTSSKLPPIFAFPSCFFLSRSSASCFSFLTYIIKAVKPPPTT 274
++H+P AL +T+L S K P I +C F + C + + V PPP T
Sbjct: 14 DVHWPHGLALGITSLEVPVPSDKGPWIH-MTACLFFLETGPHCREVIVKVSNPVMPPPAT 72
Query: 273 TVAAIDFH 250
D H
Sbjct: 73 LTWERDTH 80
>AY260762-1|AAP20225.1| 3567|Homo sapiens zinc finger homeodomain 4
protein protein.
Length = 3567
Score = 31.1 bits (67), Expect = 4.0
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Frame = +2
Query: 428 DFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQRDTPELV 607
D L M + TH + PD +EKL V + + L P S +RDTP V
Sbjct: 1208 DVLSNKMHLQLHLTHLHSVSPDCVEKLLMTVPVPDVMMPNSMLLPAAASEKSERDTPAAV 1267
Query: 608 -----GKYCKE 625
GKY E
Sbjct: 1268 TAEGSGKYSGE 1278
>AB083343-1|BAE96598.1| 3599|Homo sapiens zinc-finger homeodomain
protein 4 protein.
Length = 3599
Score = 31.1 bits (67), Expect = 4.0
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Frame = +2
Query: 428 DFLGKWMLIYFGFTHCPDICPDELEKLAEVVDLHGKTPSSPPLQPVFISVDPQRDTPELV 607
D L M + TH + PD +EKL V + + L P S +RDTP V
Sbjct: 1253 DVLSNKMHLQLHLTHLHSVSPDCVEKLLMTVPVPDVMMPNSMLLPAAASEKSERDTPAAV 1312
Query: 608 -----GKYCKE 625
GKY E
Sbjct: 1313 TAEGSGKYSGE 1323
>BC021101-1|AAH21101.1| 651|Homo sapiens cofactor required for Sp1
transcriptional activation, subunit 6, 77kDa protein.
Length = 651
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 179 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 352
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 353 KQL 361
+L
Sbjct: 185 SEL 187
>AK001674-1|BAA91827.1| 651|Homo sapiens protein ( Homo sapiens
cDNA FLJ10812 fis, clone NT2RP4000975. ).
Length = 651
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 179 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 352
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 353 KQL 361
+L
Sbjct: 185 SEL 187
>AF117657-1|AAD22031.2| 651|Homo sapiens thyroid hormone
receptor-associated protein complex component TRAP80
protein.
Length = 651
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 179 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 352
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 353 KQL 361
+L
Sbjct: 185 SEL 187
>AF105421-1|AAD30856.1| 652|Homo sapiens vitamin D3 receptor
interacting protein protein.
Length = 652
Score = 30.7 bits (66), Expect = 5.3
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = +2
Query: 179 LSTTPVRQCAVPPKRTPKTLMPIT-WKSMA-ATVVVGGGLTAFMMYVKKEKQEALDRERK 352
++ PV Q A+PPK+ P+TL I+ KS+A A ++ G V + ++ L R+
Sbjct: 125 MTLDPVSQDALPPKQNPQTLQLISKKKSLAGAAQILLKGAERLTKSVTENQENKLQRDFN 184
Query: 353 KQL 361
+L
Sbjct: 185 SEL 187
>AJ001515-1|CAA04798.1| 4870|Homo sapiens ryanodine receptor 3
protein.
Length = 4870
Score = 29.9 bits (64), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 167 VFRALSTTPVRQCAVPPKRTPKTLMPITWKSM 262
+FR+ PV QC PP+ +T+ P+ W M
Sbjct: 1474 IFRSEEKNPVPQC--PPRLDVQTIQPVLWSRM 1503
>AB001025-1|BAA23795.1| 4866|Homo sapiens brain ryanodine receptor
protein.
Length = 4866
Score = 29.9 bits (64), Expect = 9.3
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +2
Query: 167 VFRALSTTPVRQCAVPPKRTPKTLMPITWKSM 262
+FR+ PV QC PP+ +T+ P+ W M
Sbjct: 1475 IFRSEEENPVPQC--PPRLDVQTIQPVLWSRM 1504
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,242,113
Number of Sequences: 237096
Number of extensions: 2140769
Number of successful extensions: 5081
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 4887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5076
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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