Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28f01
         (704 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    24   1.2  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    23   3.7  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   6.5  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   6.5  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   6.5  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   8.6  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    21   8.6  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.6  

>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
 Frame = -1

Query: 149 VAWNSFYYFNSFR--LPW 102
           +AW  FY+F S R  LPW
Sbjct: 81  LAWAIFYFFMSMRSELPW 98


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +1

Query: 220 KNSENAYADNMEVNGSNRCSWRRLDGFYDVCQKRKTG 330
           K  E A   N++V G+         G YD+  KR+ G
Sbjct: 295 KLEEIAGKFNLQVRGTRGEHTEAEGGIYDISNKRRLG 331


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 443 WMLIYFGFTHCPDICPDE 496
           + L+Y     CPD CP +
Sbjct: 343 FFLMYVIVPFCPDCCPSD 360


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 443 WMLIYFGFTHCPDICPDE 496
           + L+Y     CPD CP +
Sbjct: 343 FFLMYVIVPFCPDCCPSD 360


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 7/18 (38%), Positives = 10/18 (55%)
 Frame = +2

Query: 443 WMLIYFGFTHCPDICPDE 496
           + L+Y     CPD CP +
Sbjct: 343 FFLMYVIVPFCPDCCPSD 360


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 602 TLVCPSEGRLI*RLVAKVVMMEFCHVNP 519
           T+ CP +GRL  +  A ++   +  V P
Sbjct: 157 TISCPIDGRLNSKQAAVIIAFTWFWVTP 184


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 557 QPVFISVDPQRDTPELVGKYCKEFTPRLLG 646
           +P++ ++      P  V  YC  F PR +G
Sbjct: 332 KPLYYNIINIEQIPVPVPIYCGNFPPRPMG 361


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = -1

Query: 602 TLVCPSEGRLI*RLVAKVVMMEFCHVNP 519
           T+ CP +GRL  +  A ++   +  V P
Sbjct: 157 TISCPIDGRLNSKQAAVIIAFTWFWVTP 184


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,222
Number of Sequences: 438
Number of extensions: 4210
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)