Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28e22
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 28 0.93
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 27 1.6
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 26 3.7
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy... 25 6.5
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 25 6.5
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 25 6.5
SPAC926.05c |||diphthamide biosynthesis protein Dph4 |Schizosacc... 25 8.6
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces... 25 8.6
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 25 8.6
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 28.3 bits (60), Expect = 0.93
Identities = 20/74 (27%), Positives = 30/74 (40%)
Frame = +2
Query: 284 IKDSTTPLYNIAMYKSDYDAIKNKNIKTLFDLYNDRLPINFLDTSATSPAVRKTPGKRSA 463
IKD + + I ++ + + N + T FD+ ND + + T T P P K S
Sbjct: 860 IKDISNQTHEINSVENKAETVSNNSKITNFDIPNDATSLPTIITHPTPPPPPPLPVKTSL 919
Query: 464 EDDLLPTRSNKRAN 505
P N AN
Sbjct: 920 NTFSHPDSVNIVAN 933
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 27.5 bits (58), Expect = 1.6
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 296 TTPLYNIAMYKSDYDAIKNK-NIKTLFDLYNDRLPINFLDTSATSPAVRKTPGKR 457
TTP++NI DYDA +N N T ++ P+ +A T G R
Sbjct: 218 TTPIHNIEKLWRDYDAFENSVNRATARKFVAEKSPVYMAARAAMRELSNLTEGLR 272
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/71 (26%), Positives = 36/71 (50%)
Frame = +2
Query: 71 SDADAGEFQIFLNQEDCVMLKNLSNLASKFFNVRCVADTLEVMLEALRNNIELVQPESDA 250
SD DA + Q +E M + ++ + ++ +R + + L+ EALRN+ E + +S
Sbjct: 2 SDQDALDTQ---EKELLEMKERVAEMEAEAAKLRAMQEQLDNETEALRNDKESIDAQSVY 58
Query: 251 VRRIVIKMTQE 283
V + +T E
Sbjct: 59 VGNVDYSVTPE 69
>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 6.5
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 65 LNSDADAGEFQIFLNQEDCVMLKNLSNLASKFFNV 169
LNS+ DAG F F N+ D K + + N+
Sbjct: 528 LNSEIDAGYFDDFTNENDMSKYKEVHEKQAAIANM 562
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 6.5
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +2
Query: 131 KNLSNLASKFFNVRCVADTLEVMLEALRNNIEL 229
K LSN+ +K FN++ + LE + ++ ++ L
Sbjct: 221 KFLSNVKTKVFNMKASTEILESLFTSIEESLSL 253
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 25.4 bits (53), Expect = 6.5
Identities = 16/72 (22%), Positives = 35/72 (48%)
Frame = -1
Query: 471 SSSADLLPGVLRTAGLVADVSKKLIGSLSLYRSNKVLMFLFFMAS*SLLYMAMLYSGVVE 292
+S DL + + G+ + + + LY + + A +LL ++ L+SG +
Sbjct: 584 ASLRDLNDSISKLDGICMFIVAVITLFIFLYLIARNFSGVLTSAGTTLLGLSWLFSGSAQ 643
Query: 291 SLISCVIFMTIR 256
L+S +IF+ ++
Sbjct: 644 ELLSSIIFVFVK 655
>SPAC926.05c |||diphthamide biosynthesis protein Dph4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 139
Score = 25.0 bits (52), Expect = 8.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 26 ITTIDQLKKFRDYLNSDADAGEFQIFLNQE 115
+ TIDQ+K+ L+S+ D ++QI +E
Sbjct: 43 VYTIDQVKEAYQVLSSEKDRQQYQIKQEEE 72
>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 857
Score = 25.0 bits (52), Expect = 8.6
Identities = 15/57 (26%), Positives = 24/57 (42%)
Frame = -1
Query: 270 FMTIRRTASLSGCTNSILLRRASNITSNVSATQRTLKNFDAKFDKFFSITQSSWFKN 100
+ I T++ S + L + A N+ VS +R F ++ FF S F N
Sbjct: 304 YSIINLTSNHSSFSLKALKKIAHNLLPPVSVAERYANEFFLRYQSFFYFYPPSVFSN 360
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +2
Query: 437 RKTPGKRSAEDDLLPTRSNK 496
R P KR++ED ++P ++NK
Sbjct: 271 RPIPLKRASEDQIIPQQTNK 290
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,056,272
Number of Sequences: 5004
Number of extensions: 39640
Number of successful extensions: 150
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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