Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28e22
(612 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_1063 + 30048724-30048753,30049036-30049175,30049282-300493... 31 0.95
03_01_0480 - 3676529-3676687,3676767-3676931,3677044-3677220,367... 29 2.2
10_06_0033 + 9865963-9866090,9868173-9868253,9868358-9868375,986... 29 2.9
03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,324... 29 2.9
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257... 28 5.1
04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692 28 6.7
02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475 28 6.7
03_06_0418 + 33785482-33785870,33786098-33786173,33786985-337870... 27 8.9
>03_05_1063 +
30048724-30048753,30049036-30049175,30049282-30049336,
30049419-30049526,30050190-30050288,30050380-30050457,
30050558-30050635,30051875-30051949,30052117-30052217,
30052502-30052527,30053224-30053297,30053358-30053379,
30054108-30054223,30054361-30054618,30054716-30054832,
30055649-30055699,30055859-30056086,30056550-30056648,
30056823-30056999,30057298-30057417
Length = 683
Score = 30.7 bits (66), Expect = 0.95
Identities = 25/89 (28%), Positives = 41/89 (46%), Gaps = 1/89 (1%)
Frame = +2
Query: 125 MLKNLSNLASKFFNVRCVADTLEVMLEALRNNIELVQPESDAVRRIVIKMTQEIKDSTTP 304
M N+ L SK +V+ +DT+ L R NIE + + +R++ Q I D T
Sbjct: 65 MEANMEQLLSKITSVQSRSDTVNTSLFDKRENIEKLHRTRNLLRKV-----QFIYDLPTR 119
Query: 305 LYNIAMYKSDYDAIK-NKNIKTLFDLYND 388
L ++ DA++ K +F+ Y D
Sbjct: 120 LNKCIKTEAYADAVRFFTGAKPIFEAYGD 148
>03_01_0480 -
3676529-3676687,3676767-3676931,3677044-3677220,
3678170-3678273,3678700-3678843,3679831-3679898,
3680059-3680162,3680759-3680767,3681572-3681657,
3681918-3683373
Length = 823
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 349 FYGVIIAFVHGNVVQRRGRIFNFLRHFYDYSP 254
F V+IA HG +V + FN ++H Y P
Sbjct: 351 FVAVLIACSHGGMVDKGREFFNLMQHKYRVEP 382
>10_06_0033 +
9865963-9866090,9868173-9868253,9868358-9868375,
9869257-9869374,9869724-9869795,9870049-9870066,
9870231-9870551,9870652-9870760,9871562-9871736,
9871761-9871828,9873147-9873227,9873541-9873767
Length = 471
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 251 RHRFQAAPTQYYYEELPTLPLTCRPRNE 168
RH+F ++ LPTLP+T PR E
Sbjct: 292 RHKFLRMLLPFWSSALPTLPVTAPPRKE 319
>03_01_0423 + 3240224-3240394,3241464-3241628,3242322-3242339,
3242494-3242836,3244138-3248540,3248928-3249107,
3249108-3250892,3251055-3252173
Length = 2727
Score = 29.1 bits (62), Expect = 2.9
Identities = 25/100 (25%), Positives = 46/100 (46%)
Frame = +2
Query: 8 LTNRLHITTIDQLKKFRDYLNSDADAGEFQIFLNQEDCVMLKNLSNLASKFFNVRCVADT 187
L++ H T++ N A + L+ E ++ + L F +++C T
Sbjct: 2044 LSSFFHDLTVESASVLVSLDNDMAMLSSVRHELDHEVTMLNRRAKILEMDFQHLKC---T 2100
Query: 188 LEVMLEALRNNIELVQPESDAVRRIVIKMTQEIKDSTTPL 307
LE +LEAL + + L + +S+ + I ++T E S T L
Sbjct: 2101 LENLLEALGSRLVLSEFDSNTSKIICQELTIECNSSMTQL 2140
>08_02_1277 +
25823835-25825113,25825201-25825418,25825501-25825724,
25826468-25827080,25827735-25827775,25830549-25831191,
25832595-25834012,25834110-25834251,25834415-25834522,
25835346-25835558,25835643-25835753,25836099-25836293,
25836555-25836695,25836835-25836909
Length = 1806
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 68 NSDADAGEFQIFLNQEDCVMLKNLSNLASKFFNVRCVADTLEVMLEALR 214
N++ G F ++LN+ + + + ++ S+F + A + VMLEA R
Sbjct: 369 NAEETPG-FTVYLNRRPASLAEAMKDIDSQFLGICDAAKEISVMLEASR 416
>04_01_0545 + 7046861-7047955,7048822-7049436,7052887-7054692
Length = 1171
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/59 (27%), Positives = 33/59 (55%)
Frame = +2
Query: 191 EVMLEALRNNIELVQPESDAVRRIVIKMTQEIKDSTTPLYNIAMYKSDYDAIKNKNIKT 367
+ M+EAL N ++ E + + +IV + T +KD + + + +D++ IKN ++T
Sbjct: 10 KTMVEALVNKVKSTIKEEEELWQIVQRDTVFMKDEFEMMQSF-LKTADWERIKNNVVRT 67
>02_02_0647 - 12613356-12614040,12615034-12615219,12617168-12617475
Length = 392
Score = 27.9 bits (59), Expect = 6.7
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 243 LSGCTNSILLRRASNITSNVSATQRTLKNFDAKFDKF 133
L+ CT SILL+ N+ + + FD +FD+F
Sbjct: 200 LTTCTISILLKAVGEAFPNLKCLRLNHRWFDVQFDEF 236
>03_06_0418 +
33785482-33785870,33786098-33786173,33786985-33787071,
33788096-33788143
Length = 199
Score = 27.5 bits (58), Expect = 8.9
Identities = 18/65 (27%), Positives = 25/65 (38%)
Frame = -3
Query: 457 SLAGSFANCWTGCGRVQKINRQPVVVQVKQSFNVFVFYGVIIAFVHGNVVQRRGRIFNFL 278
SL S A RV + P + ++ +++F YG I GN RG F
Sbjct: 5 SLRKSNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRLGNAKDTRGTAFVVY 64
Query: 277 RHFYD 263
YD
Sbjct: 65 EDIYD 69
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,777,355
Number of Sequences: 37544
Number of extensions: 236314
Number of successful extensions: 624
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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