Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e22
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical...    33   0.16 
U23411-2|AAC46731.2|  471|Caenorhabditis elegans Hypothetical pr...    31   0.49 
Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z75712-4|CAB00043.1|  694|Caenorhabditis elegans Hypothetical pr...    29   2.6  
AF067943-3|AAC17664.1|  266|Caenorhabditis elegans Hypothetical ...    27   8.0  

>AC006708-10|AAF60430.2| 1250|Caenorhabditis elegans Hypothetical
           protein Y110A7A.16 protein.
          Length = 1250

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 19/64 (29%), Positives = 36/64 (56%)
 Frame = +2

Query: 101 FLNQEDCVMLKNLSNLASKFFNVRCVADTLEVMLEALRNNIELVQPESDAVRRIVIKMTQ 280
           F++ E    L+++ N+ +    V C + +  V+L+A R N+E +QP     RR V+  T+
Sbjct: 626 FIDAESGKTLEDVRNVEAGCELVACDSQSANVILQAARGNLETIQP-----RRYVMAHTR 680

Query: 281 EIKD 292
           ++ D
Sbjct: 681 DLLD 684


>U23411-2|AAC46731.2|  471|Caenorhabditis elegans Hypothetical
           protein T25E4.2 protein.
          Length = 471

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 355 FVFYGV-IIAFVHGNVVQRRGRIFNFLRHFYDYSPYGIAFR 236
           F+FYG+ II F+   +  R  + F F  H Y+Y   G  +R
Sbjct: 397 FIFYGIAIIVFILEIIFHRMTKNFTFFGHSYNYHLSGFEWR 437


>Z83230-1|CAB05741.1| 1049|Caenorhabditis elegans Hypothetical
           protein F56A8.1 protein.
          Length = 1049

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -1

Query: 303 GVVESLISCVIFMTIRRTASLSGCTNSILLRRASNITSNVS-ATQRTLKNFDAKFDKFFS 127
           G ++S+ S  +     +  +  G T ++     + +T   S  TQ  + +FD K + FF+
Sbjct: 291 GFIDSISSAPLDWNHCKVVNFIGQTENVACGMRNGVTLFFSMVTQWFMSSFDTKMNAFFA 350

Query: 126 ITQSSW 109
           +  S W
Sbjct: 351 VFMSIW 356


>Z75712-4|CAB00043.1|  694|Caenorhabditis elegans Hypothetical
           protein K04G2.6 protein.
          Length = 694

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 10/39 (25%), Positives = 23/39 (58%)
 Frame = -3

Query: 340 VIIAFVHGNVVQRRGRIFNFLRHFYDYSPYGIAFRLHQL 224
           V++ ++  +VV+ R  + N++RH +   P  +   +HQ+
Sbjct: 345 VLLKYIKYDVVETRVTVLNWIRHLHSSMPGQLFVHMHQI 383


>AF067943-3|AAC17664.1|  266|Caenorhabditis elegans Hypothetical
           protein F59B1.4 protein.
          Length = 266

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 364 FNVFVFYGVIIAFVHGNVVQRRGRIFNFLRHFY 266
           F  FV++  +I  V   +V R+G+IF+F    Y
Sbjct: 89  FAGFVYFTFMILVVRLKIVARKGKIFDFSNRSY 121


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,441,063
Number of Sequences: 27780
Number of extensions: 226368
Number of successful extensions: 868
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 768
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)