Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28e20
(587 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 79 5e-16
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po... 63 3e-11
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 40 3e-04
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 39 6e-04
SPBC409.12c |||nuclear telomere cap complex subunit Stn1|Schizos... 29 0.38
SPAC17C9.13c |cut8||tethering factor for nuclear proteasome Cut8... 26 3.5
SPCC663.15c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.2
SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr 3||... 25 8.2
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S... 25 8.2
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 79.0 bits (186), Expect = 5e-16
Identities = 42/90 (46%), Positives = 58/90 (64%)
Frame = +2
Query: 317 SLVRRKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDY 496
S + RK LVLDLDETLIHS R T G P + + +HP+ +++HKRPH+DY
Sbjct: 299 SKLPRKTLVLDLDETLIHSVSRGS-RTT--SGQPIEVHVP---GEHPILYYIHKRPHLDY 352
Query: 497 FLDIVSQWYELVVFTASMEIYGAAVADKLD 586
FL VSQW+ L++FTAS++ Y + D L+
Sbjct: 353 FLSNVSQWFRLILFTASVQPYADPIIDYLE 382
>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 325
Score = 63.3 bits (147), Expect = 3e-11
Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 2/88 (2%)
Frame = +2
Query: 329 RKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTID--KHPVRFFVHKRPHVDYFL 502
+K L+LDLDETL+HS + K P DFV+ + ID +H VR V KRP VD FL
Sbjct: 157 KKCLILDLDETLVHS--------SFKYIEPADFVVSIEIDGLQHDVR--VVKRPGVDEFL 206
Query: 503 DIVSQWYELVVFTASMEIYGAAVADKLD 586
+ +E+VVFTAS+ Y V D LD
Sbjct: 207 KKMGDMFEIVVFTASLAKYADPVLDMLD 234
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 39.9 bits (89), Expect = 3e-04
Identities = 30/101 (29%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Frame = +2
Query: 311 RLSLVRRKILVLDLDETLIHSHHDAMVRPTVK-PGTPPDFVLK----VTIDKHPVR---- 463
RL +R L++DLD+T+IH+ D V + PG VL+ + + P
Sbjct: 158 RLRQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSC 217
Query: 464 FFVHKRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKLD 586
+++ RP + FL +S+ YEL ++T + Y VA +D
Sbjct: 218 YYIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIID 258
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 38.7 bits (86), Expect = 6e-04
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +2
Query: 476 KRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKLD 586
KRP +DYFL +S +YE+V+FT + DK+D
Sbjct: 202 KRPGLDYFLGYLSMYYEVVIFTRQYLATAKPIIDKID 238
>SPBC409.12c |||nuclear telomere cap complex subunit
Stn1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 325
Score = 29.5 bits (63), Expect = 0.38
Identities = 9/38 (23%), Positives = 23/38 (60%)
Frame = +2
Query: 446 DKHPVRFFVHKRPHVDYFLDIVSQWYELVVFTASMEIY 559
D H + F H + ++ +++ +W ++V + A+++IY
Sbjct: 25 DVHKISFHPHLQRYIGFWMGFPIRWIQIVGYIAAIDIY 62
>SPAC17C9.13c |cut8||tethering factor for nuclear proteasome
Cut8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 3.5
Identities = 14/56 (25%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Frame = -2
Query: 550 HRRSKHNQLIPL*NYIQKVVYMRPLMNKKSNWMFVDSDFQDKVRRRTR-LNSGPDH 386
H ++ N++ NY++++ PL++++S+ F ++ Q+ R T +N G D+
Sbjct: 197 HNKTSQNRMEEALNYLKQLQKNEPLVHERSH-TFQQTNPQNNFHRHTNSMNIGNDN 251
>SPCC663.15c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 657
Score = 25.4 bits (53), Expect = 6.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +1
Query: 139 LNNSNAEKVANGPSRVHASSIKSM-ELYLLYV 231
L N N + ANGP R+H S+K + E Y L V
Sbjct: 139 LANVNMDD-ANGPERLHYPSVKRLREAYSLLV 169
>SPCC63.10c |||dolichol kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 465
Score = 25.0 bits (52), Expect = 8.2
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 6/80 (7%)
Frame = +2
Query: 122 VLVISF*TIPMLKRLQMGLRAFMLVASKVWSCICYMFKKQYRALAQYQSV------KYEI 283
VL+IS T+ +L + L A + +++ +C+ Y F L V E+
Sbjct: 153 VLLISLPTLILLNLCILKLAAKLHLSALFTTCLIYFFSALLVFLVSRSWVAGQLGQAPEV 212
Query: 284 YPLSPVSRHRLSLVRRKILV 343
+ + + HR SL R KI++
Sbjct: 213 WLFNQIFSHRNSLTRIKIII 232
>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1052
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/41 (26%), Positives = 21/41 (51%)
Frame = +2
Query: 257 QYQSVKYEIYPLSPVSRHRLSLVRRKILVLDLDETLIHSHH 379
+Y ++ +YP P L L+ ++ +DL +T H H+
Sbjct: 845 EYAHIQIGVYPFLPEIVRALLLLDKREQAIDLVKTYGHLHY 885
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,818
Number of Sequences: 5004
Number of extensions: 50410
Number of successful extensions: 111
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 109
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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