Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28e20
(587 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_02_0085 - 6465126-6466049 66 2e-11
01_05_0779 + 25128320-25128518,25129048-25129141,25129867-251300... 62 2e-10
05_07_0137 + 27955876-27956000,27957626-27957714,27957963-279580... 61 7e-10
01_06_0169 - 27172182-27172361,27172552-27172889,27172983-271734... 60 1e-09
03_06_0688 - 35559239-35559433,35560455-35560792,35561357-355617... 58 7e-09
07_01_0759 + 5838726-5838879,5839654-5839778,5840168-5840264,584... 54 8e-08
01_06_1240 - 35654671-35654805,35654887-35655040,35655254-356553... 39 0.003
02_05_1068 + 33862378-33863640 38 0.004
05_06_0056 + 25246631-25246913,25247047-25247141,25247593-252476... 36 0.024
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640... 33 0.13
02_05_1069 + 33865106-33865407,33865584-33866274 32 0.30
11_04_0039 + 12679350-12680057,12680136-12680582,12680670-126815... 29 2.7
01_06_0799 - 32072656-32072841,32072846-32072950,32073726-320738... 29 2.7
08_02_1452 + 27196061-27196519,27196631-27197500 29 3.6
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 28 4.8
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 28 4.8
01_06_0397 + 29017608-29018510,29018751-29019083 28 6.3
12_02_0230 + 15973390-15974645,16002878-16003097 27 8.4
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 27 8.4
>05_02_0085 - 6465126-6466049
Length = 307
Score = 66.1 bits (154), Expect = 2e-11
Identities = 39/86 (45%), Positives = 48/86 (55%)
Frame = +2
Query: 329 RKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDI 508
R+ L LDLDETLIHS D R DF ++ I V F+V KRP VD FL
Sbjct: 129 RRTLFLDLDETLIHSQTDPAARAR------HDFAVRPVIAGQAVTFYVVKRPGVDAFLAA 182
Query: 509 VSQWYELVVFTASMEIYGAAVADKLD 586
+ +ELVVFTA + Y + V D+LD
Sbjct: 183 AAAAFELVVFTAGLPEYASLVLDRLD 208
>01_05_0779 +
25128320-25128518,25129048-25129141,25129867-25130078,
25130924-25131054,25131933-25132041,25132180-25132659,
25133194-25133531,25133810-25133977
Length = 576
Score = 62.5 bits (145), Expect = 2e-10
Identities = 35/83 (42%), Positives = 49/83 (59%)
Frame = +2
Query: 338 LVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDIVSQ 517
LVLDLDETL+HS T+ DF L+V + +V +RPH+ FL+ V+Q
Sbjct: 403 LVLDLDETLVHS--------TLDHCDNVDFTLQVFFNMKNHTVYVRQRPHLKMFLEKVAQ 454
Query: 518 WYELVVFTASMEIYGAAVADKLD 586
++LV+FTAS IY + D+LD
Sbjct: 455 MFDLVIFTASQRIYAEQLIDRLD 477
>05_07_0137 +
27955876-27956000,27957626-27957714,27957963-27958054,
27959338-27959419,27960038-27960454,27960539-27960876,
27961066-27961233
Length = 436
Score = 60.9 bits (141), Expect = 7e-10
Identities = 43/103 (41%), Positives = 59/103 (57%)
Frame = +2
Query: 278 EIYPLSPVSRHRLSLVRRKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHP 457
+IYP S + R ++ LVLDLDETLIHS A+ R G F + + +H
Sbjct: 247 DIYPDSFLPTPRKNIT----LVLDLDETLIHS--SAVDRD----GADFSFPMYHGLKEHT 296
Query: 458 VRFFVHKRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKLD 586
V +V KRPHVD FL VS+ +++V+FTAS+ Y + D LD
Sbjct: 297 V--YVKKRPHVDTFLQKVSEMFKVVIFTASLSSYANRLLDMLD 337
>01_06_0169 -
27172182-27172361,27172552-27172889,27172983-27173426,
27174731-27174836,27175401-27175495,27175802-27175958
Length = 439
Score = 60.5 bits (140), Expect = 1e-09
Identities = 34/87 (39%), Positives = 47/87 (54%)
Frame = +2
Query: 326 RRKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLD 505
R+ LVLDLDETL+HS T + DF V D +V KRPH+ FL
Sbjct: 258 RKVTLVLDLDETLVHS--------TTEQCDDYDFTFPVFFDMKEHMVYVRKRPHLHMFLQ 309
Query: 506 IVSQWYELVVFTASMEIYGAAVADKLD 586
+++ +E+V+FTAS +Y + D LD
Sbjct: 310 KMAEMFEVVIFTASQSVYADQLLDILD 336
>03_06_0688 -
35559239-35559433,35560455-35560792,35561357-35561785,
35562014-35562110,35562314-35562438,35562758-35562908
Length = 444
Score = 57.6 bits (133), Expect = 7e-09
Identities = 32/86 (37%), Positives = 47/86 (54%)
Frame = +2
Query: 329 RKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDI 508
R LVLDLDETL+HS T++P DF V + +V RP++ FL+
Sbjct: 259 RTTLVLDLDETLVHS--------TLEPCEDSDFTFPVHFNLREHTIYVRCRPYLKEFLET 310
Query: 509 VSQWYELVVFTASMEIYGAAVADKLD 586
V+ +E+++FTAS IY + + LD
Sbjct: 311 VASMFEIIIFTASQSIYAEQLLNILD 336
>07_01_0759 +
5838726-5838879,5839654-5839778,5840168-5840264,
5840948-5841421,5842017-5842354,5843039-5843197,
5843273-5843311
Length = 461
Score = 54.0 bits (124), Expect = 8e-08
Identities = 31/83 (37%), Positives = 45/83 (54%)
Frame = +2
Query: 338 LVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDIVSQ 517
LVLDLDETL+HS T++P DF V + +V RP++ FL+ V+
Sbjct: 278 LVLDLDETLVHS--------TLEPCEDADFAFPVYFNFREHTIYVRCRPYLKEFLERVAN 329
Query: 518 WYELVVFTASMEIYGAAVADKLD 586
+E ++FTAS IY + + LD
Sbjct: 330 LFETIIFTASQSIYAEQLLNVLD 352
>01_06_1240 -
35654671-35654805,35654887-35655040,35655254-35655335,
35655413-35655533,35655622-35655750,35656116-35656136,
35656655-35656972
Length = 319
Score = 39.1 bits (87), Expect = 0.003
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 12/109 (11%)
Frame = +2
Query: 296 PVSRHRL-SLVRRKILVLDLDETLIHSHHD----AMVRPTVKPGTPPDFVLKVTIDKHPV 460
P S RL SL ++VLDLDETL+ ++ A+VR F ++ + V
Sbjct: 99 PESLQRLTSLAELWMVVLDLDETLVSAYESSSLPAIVRTQAVEAGLHCFDMECISTEKDV 158
Query: 461 R-------FFVHKRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKLD 586
V +RP + FL S++ +L++FTA +E Y + D++D
Sbjct: 159 EGRNKVNHVTVFERPGLHEFLQKTSEFADLILFTAGLEGYARPLVDRID 207
>02_05_1068 + 33862378-33863640
Length = 420
Score = 38.3 bits (85), Expect = 0.004
Identities = 35/108 (32%), Positives = 46/108 (42%), Gaps = 6/108 (5%)
Frame = +2
Query: 281 IYPLSPVSRHRLSLVRRK--ILVLDLDETLIHSHHDAMVRPTVKPG----TPPDFVLKVT 442
+ P P S + SL+R + ILV+DLD TLI+S A + K D +
Sbjct: 88 LLPPEPTSANLASLLRARKLILVVDLDHTLINSTRFAHLSDDEKANGFTERTGDDRSRGL 147
Query: 443 IDKHPVRFFVHKRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKLD 586
R RP V FL S +E+ V+T Y AVA LD
Sbjct: 148 FRMGLFRMITKLRPFVHEFLREASAMFEMHVYTLGNRNYATAVAKLLD 195
>05_06_0056 +
25246631-25246913,25247047-25247141,25247593-25247629,
25248158-25248219,25248305-25248418,25249248-25249352,
25249441-25249539,25250203-25250359,25250473-25250579
Length = 352
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = +2
Query: 476 KRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKLD 586
KRP VD F++ + ++YE+VV++ M +Y V ++LD
Sbjct: 206 KRPGVDAFIEHMGKFYEVVVYSDQMPMYVDPVLERLD 242
>11_04_0474 + 18162538-18163731,18163800-18163855,18163951-18164011,
18164107-18165495,18166024-18166635,18166706-18166852,
18166941-18167209,18167322-18167412,18167500-18167757,
18168376-18168450,18168937-18168945
Length = 1386
Score = 33.5 bits (73), Expect = 0.13
Identities = 28/102 (27%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Frame = +2
Query: 305 RHRLSLVRRKILVLDLDETLIHS-------H-HDAMVRPTVKPGTPPDFVLKVTIDKHPV 460
+H++ R+ LVLDLD TL++S H H ++R K + + + +
Sbjct: 1080 QHKMFAARKLCLVLDLDHTLLNSAKFIEVDHIHGEILRK--KEEQDRERAERHLFCFNHM 1137
Query: 461 RFFVHKRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKLD 586
+ RP + FL+ S+ YEL ++T ++Y +A LD
Sbjct: 1138 GMWTKLRPGIWNFLEKASKLYELHLYTMGNKVYATEMAKVLD 1179
>02_05_1069 + 33865106-33865407,33865584-33866274
Length = 330
Score = 32.3 bits (70), Expect = 0.30
Identities = 17/36 (47%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Frame = +2
Query: 281 IYPLSPVSRHRLSLVRRK--ILVLDLDETLIHSHHD 382
+ P P S H SL+R + ILV+DLD TL++S D
Sbjct: 59 VLPPEPTSGHLASLLRARKLILVVDLDHTLVNSTAD 94
>11_04_0039 +
12679350-12680057,12680136-12680582,12680670-12681556,
12681635-12681805,12681872-12682160,12682390-12682428
Length = 846
Score = 29.1 bits (62), Expect = 2.7
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 248 ALAQYQSVK--YEIYPLS-PVSRHRLSLVRRKILVLDLDETLIHSHHDAMVRPTVKPGTP 418
A Q SVK YE++PL P + LSL + + + LI + RPT PG P
Sbjct: 428 AKVQVDSVKPEYELFPLKYPPNDEVLSLGNARGTFIQWPKDLIEIR--VIARPTTAPGGP 485
Query: 419 P 421
P
Sbjct: 486 P 486
>01_06_0799 -
32072656-32072841,32072846-32072950,32073726-32073839,
32073935-32073996,32074709-32074745,32075091-32075179,
32075331-32075604
Length = 288
Score = 29.1 bits (62), Expect = 2.7
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 476 KRPHVDYFLDIVSQWYELVVFTASMEI 556
KRP VD FL+ + ++YE+VV++ + +
Sbjct: 201 KRPGVDAFLEHLGKFYEIVVYSDQLSM 227
>08_02_1452 + 27196061-27196519,27196631-27197500
Length = 442
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 122 VLVISF*TIPMLKRLQMGLRAFMLVASKVWSCIC 223
+ VIS + LK++ GL F +++ VW C+C
Sbjct: 240 IFVISKNQLDALKQICGGLSTFCAMSALVWQCMC 273
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 28.3 bits (60), Expect = 4.8
Identities = 22/88 (25%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +2
Query: 227 MFKKQYRALAQYQSVKYEIYPLSPVSRHRLSLVRRKILVLDLDET-LIHSHHDAMVRPTV 403
+F +Y+ + + V+ E+ P + ++ +R + + L+E ++ + D V P
Sbjct: 144 LFVPRYQLAPKVRVVEKEVTP-ALADPPVVNSLRSSLNQMTLEEIPIVREYPD--VFPDD 200
Query: 404 KPGTPPDFVLKVTIDKHPVRFFVHKRPH 487
PG PP ++ ID P +HKRP+
Sbjct: 201 LPGMPPKRDIEFRIDLVPGTTPIHKRPY 228
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 28.3 bits (60), Expect = 4.8
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Frame = +2
Query: 299 VSRHRLSL--VRRKILVLDLDET-LIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFF 469
V+ H LS +R ++ + L+E ++ + D V P PG PP ++ +ID P
Sbjct: 697 VTVHALSSESLRSRLNQITLEEIPIVREYPD--VFPDDLPGMPPKRDIEFSIDLVPGTTP 754
Query: 470 VHKRPH 487
+HKRP+
Sbjct: 755 IHKRPY 760
>01_06_0397 + 29017608-29018510,29018751-29019083
Length = 411
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/67 (23%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +2
Query: 284 YPLSPVSRHRLSLVRRKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTID-KHPV 460
Y L P + + +K + ++ + IH + + RP+ +PP+FV + + K+
Sbjct: 343 YALFPFGIGPRACIGQKFAIQEMKLSAIHFYRHYVFRPSPSMESPPEFVYSIVSNFKNGA 402
Query: 461 RFFVHKR 481
+ V KR
Sbjct: 403 KLQVIKR 409
>12_02_0230 + 15973390-15974645,16002878-16003097
Length = 491
Score = 27.5 bits (58), Expect = 8.4
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 299 VSRHRLSL--VRRKILVLDLDET-LIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFF 469
V+ H LS +R ++ + L+E ++ + D V P PG PP ++ ID P
Sbjct: 249 VTVHALSSESLRSRLNQITLEEIPIVREYPD--VFPDDLPGMPPKRDIEFRIDLVPGMTP 306
Query: 470 VHKRPH 487
+HKRP+
Sbjct: 307 IHKRPY 312
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 27.5 bits (58), Expect = 8.4
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Frame = +2
Query: 299 VSRHRLSL--VRRKILVLDLDET-LIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFF 469
V+ H LS +R ++ + L+E ++ + D V P PG PP ++ ID P
Sbjct: 675 VTVHALSSESLRSRLNQITLEEIPIVREYPD--VFPDDLPGMPPKRDIEFRIDLVPGTTP 732
Query: 470 VHKRPH 487
+HKRP+
Sbjct: 733 IHKRPY 738
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,333,710
Number of Sequences: 37544
Number of extensions: 301324
Number of successful extensions: 639
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 632
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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