Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e20
         (587 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U29536-5|AAA68794.1|  246|Caenorhabditis elegans Hypothetical pr...   185   2e-47
Z83316-9|CAN99655.1|  250|Caenorhabditis elegans Hypothetical pr...    70   1e-12
Z83316-6|CAD30429.2|  491|Caenorhabditis elegans Hypothetical pr...    70   1e-12
Z83316-5|CAD30428.2|  345|Caenorhabditis elegans Hypothetical pr...    70   1e-12
AC006780-5|AAF60646.1|  287|Caenorhabditis elegans Hypothetical ...    50   1e-06
AC006780-4|AAO21411.1|  312|Caenorhabditis elegans Hypothetical ...    50   1e-06
Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical pr...    40   0.001
Z73098-12|CAA97339.1|  452|Caenorhabditis elegans Hypothetical p...    33   0.20 
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z82261-7|CAH60757.2|  300|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z68106-9|CAE17838.1|  551|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z49207-10|CAE17907.1|  551|Caenorhabditis elegans Hypothetical p...    27   7.5  

>U29536-5|AAA68794.1|  246|Caenorhabditis elegans Hypothetical
           protein F45E12.1 protein.
          Length = 246

 Score =  185 bits (450), Expect = 2e-47
 Identities = 83/120 (69%), Positives = 100/120 (83%), Gaps = 1/120 (0%)
 Frame = +2

Query: 230 FKKQYRALAQYQSVKYEI-YPLSPVSRHRLSLVRRKILVLDLDETLIHSHHDAMVRPTVK 406
           F+K  RA  +YQ VKY    P+SP++ HRL  V+RKILVLDLDETLIHSHHD ++R TVK
Sbjct: 23  FRKTSRAYCKYQVVKYHSNIPMSPLTTHRLLTVKRKILVLDLDETLIHSHHDGVLRQTVK 82

Query: 407 PGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDIVSQWYELVVFTASMEIYGAAVADKLD 586
           PGTP DF ++V ID+HPV+F VH+RPHVDYFL +VSQWYELVVFTASME+YG +VAD+LD
Sbjct: 83  PGTPSDFTIRVVIDRHPVKFSVHERPHVDYFLSVVSQWYELVVFTASMEVYGTSVADRLD 142


>Z83316-9|CAN99655.1|  250|Caenorhabditis elegans Hypothetical
           protein B0379.4c protein.
          Length = 250

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 40/86 (46%), Positives = 53/86 (61%)
 Frame = +2

Query: 329 RKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDI 508
           +K LV+DLDETL+HS        + KP   PDFV+ V ID    + +V KRP+VD FL  
Sbjct: 70  KKCLVIDLDETLVHS--------SFKPVKNPDFVIPVEIDGVEHQVYVLKRPYVDEFLAK 121

Query: 509 VSQWYELVVFTASMEIYGAAVADKLD 586
           V + +E ++FTAS+  Y   VAD LD
Sbjct: 122 VGEHFECILFTASLAKYADPVADLLD 147


>Z83316-6|CAD30429.2|  491|Caenorhabditis elegans Hypothetical
           protein B0379.4b protein.
          Length = 491

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 40/86 (46%), Positives = 53/86 (61%)
 Frame = +2

Query: 329 RKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDI 508
           +K LV+DLDETL+HS        + KP   PDFV+ V ID    + +V KRP+VD FL  
Sbjct: 311 KKCLVIDLDETLVHS--------SFKPVKNPDFVIPVEIDGVEHQVYVLKRPYVDEFLAK 362

Query: 509 VSQWYELVVFTASMEIYGAAVADKLD 586
           V + +E ++FTAS+  Y   VAD LD
Sbjct: 363 VGEHFECILFTASLAKYADPVADLLD 388


>Z83316-5|CAD30428.2|  345|Caenorhabditis elegans Hypothetical
           protein B0379.4a protein.
          Length = 345

 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 40/86 (46%), Positives = 53/86 (61%)
 Frame = +2

Query: 329 RKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDI 508
           +K LV+DLDETL+HS        + KP   PDFV+ V ID    + +V KRP+VD FL  
Sbjct: 165 KKCLVIDLDETLVHS--------SFKPVKNPDFVIPVEIDGVEHQVYVLKRPYVDEFLAK 216

Query: 509 VSQWYELVVFTASMEIYGAAVADKLD 586
           V + +E ++FTAS+  Y   VAD LD
Sbjct: 217 VGEHFECILFTASLAKYADPVADLLD 242


>AC006780-5|AAF60646.1|  287|Caenorhabditis elegans Hypothetical
           protein Y47D9A.2a protein.
          Length = 287

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 28/83 (33%), Positives = 44/83 (53%)
 Frame = +2

Query: 338 LVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDIVSQ 517
           LVLDLDETL+H         ++ P      V  V       + +V  RPH+  FL  +++
Sbjct: 67  LVLDLDETLVHC--------SLTPLDNATMVFPVVFQNITYQVYVRLRPHLRTFLSRMAK 118

Query: 518 WYELVVFTASMEIYGAAVADKLD 586
            +E+++FTAS ++Y   + D LD
Sbjct: 119 TFEIIIFTASKKVYANKLCDILD 141


>AC006780-4|AAO21411.1|  312|Caenorhabditis elegans Hypothetical
           protein Y47D9A.2b protein.
          Length = 312

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 28/83 (33%), Positives = 44/83 (53%)
 Frame = +2

Query: 338 LVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLDIVSQ 517
           LVLDLDETL+H         ++ P      V  V       + +V  RPH+  FL  +++
Sbjct: 67  LVLDLDETLVHC--------SLTPLDNATMVFPVVFQNITYQVYVRLRPHLRTFLSRMAK 118

Query: 518 WYELVVFTASMEIYGAAVADKLD 586
            +E+++FTAS ++Y   + D LD
Sbjct: 119 TFEIIIFTASKKVYANKLCDILD 141


>Z81532-3|CAC70088.2|  659|Caenorhabditis elegans Hypothetical
           protein F36F2.6 protein.
          Length = 659

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 27/87 (31%), Positives = 42/87 (48%)
 Frame = +2

Query: 326 RRKILVLDLDETLIHSHHDAMVRPTVKPGTPPDFVLKVTIDKHPVRFFVHKRPHVDYFLD 505
           R+ +L++DLD+T+IH+    M   TV      D + K  +  H   +    RPH   FL+
Sbjct: 142 RKLVLLVDLDQTIIHTSDKPM---TVDTENHKD-ITKYNL--HSRVYTTKLRPHTTEFLN 195

Query: 506 IVSQWYELVVFTASMEIYGAAVADKLD 586
            +S  YE+ + T     Y   +A  LD
Sbjct: 196 KMSNMYEMHIVTYGQRQYAHRIAQILD 222


>Z73098-12|CAA97339.1|  452|Caenorhabditis elegans Hypothetical
           protein T21C9.12 protein.
          Length = 452

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
 Frame = +2

Query: 476 KRPHVDYFLDIVS-QWYELVVFTASMEIYGAAVADKLD 586
           KRP +DYFLD++    +E+V++++   +  A V D  D
Sbjct: 273 KRPALDYFLDVIGYPNFEVVIYSSESMMTAAPVVDSFD 310


>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
           protein D1007.15 protein.
          Length = 1184

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +2

Query: 146 IPMLKRLQMGLRAFMLVASKVWSCICYMFKKQYRALAQYQSVKYEIYPLS 295
           IPM KRL+  ++ F L  S    C+   ++  +  LA   + KY   PL+
Sbjct: 567 IPMSKRLKSSVKDFYLRHSMTGHCLAVSYRPCFSKLATSLAGKYVEVPLN 616


>Z96100-7|CAB09531.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 463 SNWMFVD-SDFQDKVRRRTRLNSGPDH 386
           +N+ +V+ SDF DK  +  R+N GP H
Sbjct: 81  ANYAYVNRSDFDDKQIKHVRVNPGPAH 107


>Z79698-2|CAB01976.1|  824|Caenorhabditis elegans Hypothetical
           protein H15N14.2a protein.
          Length = 824

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 463 SNWMFVD-SDFQDKVRRRTRLNSGPDH 386
           +N+ +V+ SDF DK  +  R+N GP H
Sbjct: 81  ANYAYVNRSDFDDKQIKHVRVNPGPAH 107


>Z79698-1|CAL44963.1|  758|Caenorhabditis elegans Hypothetical
           protein H15N14.2b protein.
          Length = 758

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = -2

Query: 463 SNWMFVD-SDFQDKVRRRTRLNSGPDH 386
           +N+ +V+ SDF DK  +  R+N GP H
Sbjct: 15  ANYAYVNRSDFDDKQIKHVRVNPGPAH 41


>Z82261-7|CAH60757.2|  300|Caenorhabditis elegans Hypothetical
           protein C35D6.10 protein.
          Length = 300

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = +2

Query: 461 RFFVHKRP--HVDYFLDIVSQWYELVVFTASME 553
           RFF+ K     + YFL I+SQ + +VVF  ++E
Sbjct: 86  RFFIFKYLTFSICYFLFIISQTFNIVVFLVAVE 118


>Z68106-9|CAE17838.1|  551|Caenorhabditis elegans Hypothetical
           protein F41E7.9 protein.
          Length = 551

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -2

Query: 550 HRRSKHNQLIPL*NYIQKVVYMRPLMNKKSNWMFVDSDFQDKVRRRTRLNSGPDHR 383
           H  S+H+Q     +Y +    +RPL N +++  F +S  Q  + R  R     DH+
Sbjct: 392 HEYSQHSQNDSYDSYPESEEPIRPLQNMRNSNSFSESSQQRPISRPIRNQPRYDHQ 447


>Z49207-10|CAE17907.1|  551|Caenorhabditis elegans Hypothetical
           protein F41E7.9 protein.
          Length = 551

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = -2

Query: 550 HRRSKHNQLIPL*NYIQKVVYMRPLMNKKSNWMFVDSDFQDKVRRRTRLNSGPDHR 383
           H  S+H+Q     +Y +    +RPL N +++  F +S  Q  + R  R     DH+
Sbjct: 392 HEYSQHSQNDSYDSYPESEEPIRPLQNMRNSNSFSESSQQRPISRPIRNQPRYDHQ 447


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,404,090
Number of Sequences: 27780
Number of extensions: 274706
Number of successful extensions: 631
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 624
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)