Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e19
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744...    32   0.52 
07_01_0879 - 7290890-7291694,7291810-7291943,7292089-7292227,729...    30   2.1  
04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991...    29   3.7  
01_05_0374 - 21598480-21598487,21599547-21600672                       29   4.9  

>02_05_0958 +
           33073302-33073442,33073839-33073913,33074382-33074497,
           33076863-33076977,33077100-33077228,33078907-33078954,
           33079343-33079469,33079634-33079789,33080031-33080287,
           33080431-33080580,33080660-33080714,33080793-33081088,
           33081252-33081335,33081869-33081941,33082164-33082291,
           33082905-33083090,33083179-33083316,33083394-33083519,
           33083705-33083965
          Length = 886

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 507 PYYRLGNHEK-VEYIPLKLALNDDITSEP-QQFSEPVYKMPIDDMMVGYNNTTSNV 668
           P Y    H+K +E IP+     DD   EP    +EP  + P+D+ ++  N    +V
Sbjct: 746 PAYNAKLHQKSLEVIPVGFIFEDDTLVEPANSLAEPQLQQPLDNGLIDVNQLLESV 801


>07_01_0879 -
           7290890-7291694,7291810-7291943,7292089-7292227,
           7292338-7292585
          Length = 441

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +1

Query: 199 KVWCVYILR----QDNGKLYTGITSNLNRRIKQHSNK 297
           + +C Y+LR    +  G  Y G T N  RRI+QH+ +
Sbjct: 62  RFFCCYLLRSLCPRRKGSTYIGFTVNPRRRIRQHNGE 98


>04_04_0447 - 25297351-25297575,25297663-25298370,25298824-25299123,
            25299876-25299927,25300530-25300673,25301002-25301258,
            25301533-25301739,25301819-25301992,25302409-25302432,
            25302610-25302677,25304607-25304665,25304802-25304877,
            25304965-25305070,25305268-25305377,25305831-25305995,
            25306571-25306656,25306893-25306957,25307280-25307330,
            25309009-25309056,25309677-25309796,25310226-25310301,
            25310780-25310877,25312149-25312404,25313117-25313238
          Length = 1198

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 211  VYILRQDNGKLYTGITSNLNRRIKQHSNKQG 303
            +Y++ + + KLY G T +L  R+  H +K+G
Sbjct: 1110 IYVIIRRDSKLYIGQTDDLVGRLSAHRSKEG 1140


>01_05_0374 - 21598480-21598487,21599547-21600672
          Length = 377

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -3

Query: 373 FCSRTRSRCDTRAVNWL 323
           FC RT SR  T+ VNWL
Sbjct: 213 FCKRTFSRSSTKPVNWL 229


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,037,837
Number of Sequences: 37544
Number of extensions: 323835
Number of successful extensions: 828
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)