Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc28e14
(709 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bomb... 488 e-137
UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep: Poly... 310 2e-83
UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep: Pol... 303 3e-81
UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|R... 301 1e-80
UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10; Tym... 299 3e-80
UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; ... 291 8e-78
UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8; Tymovir... 291 8e-78
UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Glob... 288 8e-77
UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden death-a... 287 2e-76
UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2; Tymovir... 286 3e-76
UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|... 278 8e-74
UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimu... 271 1e-71
UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3; Tymovir... 267 2e-70
UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11; Tymovi... 263 3e-69
UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physali... 114 2e-24
UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyst... 111 1e-23
UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep: R... 106 6e-22
UniRef50_P20951 Cluster: RNA replication protein (176 kDa protei... 101 1e-20
UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replic... 97 4e-19
UniRef50_P28897 Cluster: RNA replication protein (150 kDa protei... 96 9e-19
UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protei... 95 1e-18
UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep... 95 2e-18
UniRef50_P09395 Cluster: RNA replication protein (165 kDa protei... 95 2e-18
UniRef50_P15095 Cluster: RNA replication protein (186 kDa protei... 95 2e-18
UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4; Po... 94 3e-18
UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|... 93 6e-18
UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|... 91 2e-17
UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic v... 91 3e-17
UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root... 89 7e-17
UniRef50_P15402 Cluster: RNA replication protein (147 kDa protei... 89 1e-16
UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X... 88 2e-16
UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotio... 87 4e-16
UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Ban... 87 5e-16
UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase R... 85 1e-15
UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: ... 85 1e-15
UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep: Rep... 85 1e-15
UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replic... 85 2e-15
UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pep... 85 2e-15
UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep: Rep... 84 3e-15
UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep:... 84 4e-15
UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Repl... 84 4e-15
UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Re... 83 9e-15
UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Swee... 83 9e-15
UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6; Po... 81 3e-14
UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis vi... 81 3e-14
UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19; Fle... 80 5e-14
UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protei... 80 6e-14
UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein)... 80 6e-14
UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem pitting... 79 8e-14
UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein... 79 1e-13
UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 79 1e-13
UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep: Repl... 78 2e-13
UniRef50_P17965 Cluster: RNA replication protein (147 kDa protei... 78 2e-13
UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narc... 77 3e-13
UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep: Rep... 77 4e-13
UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61; Tric... 75 2e-12
UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replica... 75 2e-12
UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: ... 71 2e-11
UniRef50_P22657 Cluster: RNA replication protein (152 kDa protei... 71 2e-11
UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grap... 71 4e-11
UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replica... 70 5e-11
UniRef50_P22168 Cluster: RNA replication protein (152 kDa protei... 69 9e-11
UniRef50_Q1WAJ5 Cluster: 27 kDa protein; n=1; White ash mosaic v... 60 5e-08
UniRef50_Q04610 Cluster: Non-structural polyprotein; n=538; root... 51 2e-05
UniRef50_Q0WYB5 Cluster: Nonstructural protein; n=141; Hepatitis... 48 2e-04
UniRef50_Q6QLN1 Cluster: Non-structural polyprotein; n=40; root|... 48 3e-04
UniRef50_Q5VI74 Cluster: RNA-dependent RNA polymerase; n=1; Frag... 47 5e-04
UniRef50_Q91NQ3 Cluster: Polymerase P2; n=2; Prune dwarf virus|R... 42 0.011
UniRef50_Q8JJW9 Cluster: Polyprotein; n=4; Sweet potato chloroti... 42 0.011
UniRef50_P03593 Cluster: RNA-directed RNA polymerase 2A; n=1; Al... 42 0.020
UniRef50_Q6JE41 Cluster: P2 protein; n=1; Humulus japonicus late... 40 0.079
UniRef50_A5JM40 Cluster: Polyprotein; n=9; Crinivirus|Rep: Polyp... 40 0.079
UniRef50_Q6RK13 Cluster: P2 protein; n=6; Ilarvirus subgroup 1|R... 39 0.10
UniRef50_Q6VRA8 Cluster: ORF 1a/1b fusion polyprotein; n=14; Cri... 38 0.24
UniRef50_Q6JGW4 Cluster: ORF 1a/1b fusion polyprotein; n=7; Stra... 38 0.24
UniRef50_Q7T737 Cluster: RNA-dependent RNA polymerase; n=11; roo... 38 0.32
UniRef50_Q9Q703 Cluster: P348; n=7; Beet yellows virus|Rep: P348... 37 0.56
UniRef50_Q9DUT2 Cluster: Putative 2a protein; n=1; Pelargonium z... 37 0.56
UniRef50_Q83045 Cluster: RNA-dependent RNA polymerase; n=7; Crin... 37 0.56
UniRef50_Q8BEP8 Cluster: RNA-dependent RNA polymerase; n=75; Clo... 35 1.7
UniRef50_Q86783 Cluster: RNA-directed RNA polymerase 2A; n=94; C... 35 1.7
UniRef50_Q66107 Cluster: Polymerase; n=11; Ilarvirus subgroup 2|... 35 2.3
UniRef50_A7NVU4 Cluster: Chromosome chr18 scaffold_1, whole geno... 35 2.3
UniRef50_Q997A3 Cluster: Putative polymerase p2; n=1; American p... 34 3.0
UniRef50_A4RF10 Cluster: Putative uncharacterized protein; n=1; ... 34 3.9
UniRef50_Q61PF6 Cluster: Putative uncharacterized protein CBG075... 33 5.2
UniRef50_A7SNG1 Cluster: Predicted protein; n=1; Nematostella ve... 33 5.2
UniRef50_Q9DQ91 Cluster: RNA-dependent RNA polymerase; n=1; Pine... 33 6.9
UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep: ... 33 6.9
UniRef50_A7TSR0 Cluster: Putative uncharacterized protein; n=1; ... 33 6.9
UniRef50_A4QTP3 Cluster: Putative uncharacterized protein; n=4; ... 33 6.9
UniRef50_Q8Q064 Cluster: Putative uncharacterized protein; n=1; ... 33 6.9
UniRef50_Q91NQ0 Cluster: Polymerase p2; n=5; Ilarvirus|Rep: Poly... 33 9.1
>UniRef50_Q6AW71 Cluster: RNA-dependent RNA polymerase; n=1; Bombyx
mori Macula-like latent virus|Rep: RNA-dependent RNA
polymerase - Bombyx mori Macula-like latent virus
Length = 1747
Score = 488 bits (1203), Expect = e-137
Identities = 225/236 (95%), Positives = 225/236 (95%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER
Sbjct: 1447 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 1506
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF
Sbjct: 1507 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 1566
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPR
Sbjct: 1567 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRALLAKL 1626
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKE 709
DDRTLPDKIASYLSEFVVGHSLGD FWTLLPADQVIYQSALFDFFCRECSKE
Sbjct: 1627 VLALDDRTLPDKIASYLSEFVVGHSLGDAFWTLLPADQVIYQSALFDFFCRECSKE 1682
>UniRef50_Q0IKR9 Cluster: Polyprotein; n=8; Tymoviridae|Rep:
Polyprotein - Grapevine rupestris vein feathering virus
Length = 2068
Score = 310 bits (762), Expect = 2e-83
Identities = 140/236 (59%), Positives = 176/236 (74%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
D+ DRP N+FVY G TP +++ + ++LKP + V NDY++FDQSQHGEAVV ERKKMER
Sbjct: 1550 DAADRPANIFVYAGHTPSEMANWCRANLKPGE-RVANDYTSFDQSQHGEAVVFERKKMER 1608
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
L+IPSHLIDLH ++KTN+++QFGPLTCMRLTGEPGTYDDNTDYN+AV++ EY + +
Sbjct: 1609 LNIPSHLIDLHIHLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNLAVLHLEYLVGSTPCM 1668
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
VSGDDSL+ PP +P W AV PLL+L FKKE R G FCGYY+G G IR+P
Sbjct: 1669 VSGDDSLLGREPPRNPIWQAVKPLLALRFKKERTRYGEFCGYYVGCEGCIRSPMALFAKL 1728
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKE 709
DD T+ +K+ SY +EF +GHSLGD FW LLP D V +QSA+FDFFCR ++
Sbjct: 1729 MVCVDDGTIEEKMISYATEFSIGHSLGDAFWNLLPIDAVPFQSAVFDFFCRHAPED 1784
>UniRef50_Q91TW9 Cluster: Polyprotein; n=25; Marafivirus|Rep:
Polyprotein - Maize rayado fino virus
Length = 2027
Score = 303 bits (744), Expect = 3e-81
Identities = 133/231 (57%), Positives = 171/231 (74%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
D +DRP L+V+ G TP++++ + +HL P + + NDY+AFDQSQHGEAVV ER KM R
Sbjct: 1477 DQRDRPSTLYVHAGHTPFEMADWCRAHLTPA-VKLANDYTAFDQSQHGEAVVFERYKMNR 1535
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
LSIP+ L+DLH Y+KTN+++QFGPLTCMRLTGEPGTYDDNTDYNIAV++ EY + + +
Sbjct: 1536 LSIPAELVDLHVYLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNIAVLHLEYAVGSTPLM 1595
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
VSGDDSL+ PP W A++P+L+LTFKKE R FCGYY+G GA+R+P
Sbjct: 1596 VSGDDSLLDSEPPVRDQWSAIAPMLALTFKKERGRYATFCGYYVGFTGAVRSPPALFAKL 1655
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCR 694
DD ++ DK+ +YL+EF VGHS GD FWT+LP + V YQSA FDFFCR
Sbjct: 1656 MIAVDDGSISDKLIAYLTEFTVGHSSGDAFWTILPVEAVPYQSACFDFFCR 1706
>UniRef50_Q8UZB6 Cluster: Replicase; n=5; Grapevine fleck virus|Rep:
Replicase - Grapevine fleck virus
Length = 1949
Score = 301 bits (739), Expect = 1e-80
Identities = 136/236 (57%), Positives = 172/236 (72%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
DS+DRP +L+++ GQTP+ LS + +HL P +H+ NDY+AFDQSQHGEAVVLE KM R
Sbjct: 1652 DSRDRPAHLYIHAGQTPHQLSEWCQNHLTP-SVHLANDYTAFDQSQHGEAVVLEAWKMRR 1710
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
SIP I LH ++KTNI QFGPLTCMR+TGEPGTYDDNTDYN+A++Y++Y + V
Sbjct: 1711 ASIPEPFITLHVHVKTNIECQFGPLTCMRITGEPGTYDDNTDYNLAILYTQYLLHRTPVL 1770
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
VSGDDSLV PP +P W A++PL +L K E GLFCGY++GPAGA+RAPR
Sbjct: 1771 VSGDDSLVDRVPPMNPSWPALAPLFALKPKPETSPFGLFCGYFVGPAGAVRAPRALFAKL 1830
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKE 709
+D +LP+KIASY++EF VG SLGD W+L+P + VIYQSA FD CR S +
Sbjct: 1831 AIALEDGSLPEKIASYVAEFSVGQSLGDSLWSLIPPELVIYQSACFDLICRHASPQ 1886
>UniRef50_Q9IW08 Cluster: Replicase-associated protein; n=10;
Tymoviridae|Rep: Replicase-associated protein -
Poinsettia mosaic virus
Length = 1987
Score = 299 bits (735), Expect = 3e-80
Identities = 136/236 (57%), Positives = 171/236 (72%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
DS++RP N++ + G +P ++S +A HL+ H NDY+AFDQSQHGEAVV E KM R
Sbjct: 1474 DSQERPANVYYHAGHSPLEMSEWAQKHLQSGISHT-NDYTAFDQSQHGEAVVFEMAKMRR 1532
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
LSIP LI+LH Y+K N+ +QFGPLTCMRLTGEPGTYDDNTDYN+AVIYS+Y + +
Sbjct: 1533 LSIPESLINLHSYLKRNVDTQFGPLTCMRLTGEPGTYDDNTDYNLAVIYSKYLVLDHPIM 1592
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
VSGDDS++ P +W A+ LL+L FK E ++ LFCGYY+GPAGAIR+P
Sbjct: 1593 VSGDDSVIGGNPTVSRNWPAIEKLLALRFKTESTKHPLFCGYYVGPAGAIRSPITLFAKI 1652
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKE 709
DD ++ DK+ASYLSEF +GHSLG FW LLP DQV YQSA++DFFCR S+E
Sbjct: 1653 MSAVDDLSIDDKLASYLSEFAIGHSLGHDFWDLLPIDQVPYQSAVYDFFCRHASRE 1708
>UniRef50_P89920 Cluster: Replicase-associated polyprotein; n=5; Oat
blue dwarf virus|Rep: Replicase-associated polyprotein -
Oat blue dwarf virus
Length = 2066
Score = 291 bits (715), Expect = 8e-78
Identities = 133/236 (56%), Positives = 165/236 (69%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
D++DRP +L+++ GQTP +S + +HL P + + NDY+AFDQSQHGEAVVLERKKMER
Sbjct: 1518 DARDRPAHLYIHAGQTPSSMSLWCQTHLTPA-VKLANDYTAFDQSQHGEAVVLERKKMER 1576
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
LSIP HLI LH ++KT++ +QFGPLTCMRLTGEPGTYDDNTDYN+AVI EY
Sbjct: 1577 LSIPDHLISLHVHLKTHVETQFGPLTCMRLTGEPGTYDDNTDYNLAVINLEYAAAHVPTM 1636
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
VSGDDSL+ PP P+W A+ PLL+L FKKE FCGYY G +R+P
Sbjct: 1637 VSGDDSLLDFEPPRRPEWVAIEPLLALRFKKERGLYATFCGYYASRVGCVRSPIALFAKL 1696
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSKE 709
DD ++ DK+A+YL EF VGHSLGD W+ LP V +QSA FDFFCR ++
Sbjct: 1697 AIAVDDSSISDKLAAYLMEFAVGHSLGDSLWSALPLSAVPFQSACFDFFCRRAPRD 1752
>UniRef50_P10358 Cluster: RNA replicase polyprotein; n=8;
Tymovirus|Rep: RNA replicase polyprotein - Turnip yellow
mosaic virus
Length = 1844
Score = 291 bits (715), Expect = 8e-78
Identities = 133/235 (56%), Positives = 162/235 (68%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
D+ DRPPN++ + G+TP L + HL + NDY+AFDQSQHGE+VVLE KM+R
Sbjct: 1541 DNADRPPNIYSHCGKTPNQLRDWCQEHLTHSTPKIANDYTAFDQSQHGESVVLEALKMKR 1600
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
L+IPSHLI LH ++KTN+++QFGPLTCMRLTGEPGTYDDNTDYN+AVIYS+YD+ + +
Sbjct: 1601 LNIPSHLIQLHVHLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNLAVIYSQYDVGSCPIM 1660
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
VSGDDSL+ P P DW +V L L FK E + LFCGYY+GPAG IR P
Sbjct: 1661 VSGDDSLIDHPLPTRHDWPSVLKRLHLRFKLELTSHPLFCGYYVGPAGCIRNPLALFCKL 1720
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSK 706
DD L D+ SYL+EF GH LG+ W LLP V YQSA FDFFCR C +
Sbjct: 1721 MIAVDDDALDDRRLSYLTEFTTGHLLGESLWHLLPETHVQYQSACFDFFCRRCPR 1775
>UniRef50_Q71EB6 Cluster: Replicase RdRp; n=1; Grapevine Red Globe
virus|Rep: Replicase RdRp - Grapevine Red Globe virus
Length = 424
Score = 288 bits (707), Expect = 8e-77
Identities = 135/235 (57%), Positives = 166/235 (70%), Gaps = 2/235 (0%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
D+K RP ++ + TP++LS + +H+K Q H+ NDY+A+DQSQ GEAVVLER KM R
Sbjct: 41 DNKARPSKIYYHASHTPFELSTWCQAHMKT-QHHLTNDYTAYDQSQGGEAVVLERLKMLR 99
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEY--DITTQT 355
+SIP LIDLH ++KTN+ +Q GPLT MRLTGEPGTYDDN+DYN+AV +++ D
Sbjct: 100 VSIPQPLIDLHVHLKTNVDTQLGPLTSMRLTGEPGTYDDNSDYNLAVTAAKFILDPEVHA 159
Query: 356 VFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXX 535
V +SGDD +SPPPP P W + +LSL FK E R GLFCGYYLGPAGA+R+P
Sbjct: 160 VLISGDDLDISPPPPVRPTWPILEAMLSLRFKTEVSRYGLFCGYYLGPAGAVRSPLALFA 219
Query: 536 XXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCREC 700
DD ++ DK ASYLSEF VGHSLG WTLLP +QV YQSA FDFFCR C
Sbjct: 220 KLIIAVDDGSIEDKKASYLSEFAVGHSLGQDMWTLLPENQVPYQSANFDFFCRNC 274
>UniRef50_Q3HWZ1 Cluster: Polyprotein; n=7; Citrus sudden
death-associated virus|Rep: Polyprotein - Citrus sudden
death-associated virus
Length = 2189
Score = 287 bits (704), Expect = 2e-76
Identities = 132/235 (56%), Positives = 162/235 (68%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
D +DRP +L+++ G TP +S + HL + + NDY+AFDQSQHGEAVVLERKKMER
Sbjct: 1656 DQRDRPRHLYIHAGNTPSQMSNWCQQHLTTA-VKLANDYTAFDQSQHGEAVVLERKKMER 1714
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
LSIP LIDLH ++KT++++QFGPLTCMRLTGEPGTYDDN+DYN+AVI EY
Sbjct: 1715 LSIPQALIDLHIHLKTHVSTQFGPLTCMRLTGEPGTYDDNSDYNLAVINCEYMAANTPTM 1774
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
VSGDDSL+ PP P+W + PLLSL FKKE R FCGYY G +R+P
Sbjct: 1775 VSGDDSLLDREPPTRPEWVILQPLLSLRFKKERGRYATFCGYYASHVGCVRSPVALFAKL 1834
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSK 706
DD ++ DK+ASYLSEF +GHSLGD W LP + V +QSA FDFFCR +
Sbjct: 1835 AIAVDDGSISDKMASYLSEFALGHSLGDHLWEALPLEAVPFQSACFDFFCRRAPR 1889
>UniRef50_P36304 Cluster: RNA replicase polyprotein; n=2;
Tymovirus|Rep: RNA replicase polyprotein - Kennedya
yellow mosaic virus (strain Jervis bay) (KYMV)
Length = 1874
Score = 286 bits (702), Expect = 3e-76
Identities = 133/231 (57%), Positives = 163/231 (70%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
D+ DRPP+L+ + G++P DLS + +HL QI + NDY+AFDQSQHGE+V+LE KM+R
Sbjct: 1571 DALDRPPHLYTHCGKSPADLSAWCQTHLTG-QIKLTNDYTAFDQSQHGESVILEALKMKR 1629
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
LSIPSHLI LH ++KTN+ +QFGPLTCMRLTGEPGTYDDN+DYN+AVI+S++D+ V
Sbjct: 1630 LSIPSHLIQLHVHLKTNVATQFGPLTCMRLTGEPGTYDDNSDYNLAVIHSQFDMKDIPVM 1689
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
VSGDDSL+ PP W+A LL L FK E + LFCGYY G AGAIR P
Sbjct: 1690 VSGDDSLIDRQPPLAQSWEATKRLLHLRFKTEKTTHPLFCGYYTGSAGAIRNPLALFSKL 1749
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCR 694
DD + D+ SYL+EF GH LGD WTLLP IYQSA FD+FCR
Sbjct: 1750 MIAIDDEAIHDRRLSYLTEFSTGHQLGDALWTLLPESTQIYQSACFDYFCR 1800
>UniRef50_Q32WC7 Cluster: Replicase; n=1; Dulcamara mottle virus|Rep:
Replicase - Dulcamara mottle virus
Length = 1742
Score = 278 bits (682), Expect = 8e-74
Identities = 126/235 (53%), Positives = 167/235 (71%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
D KD P +++ + G+TP DLS + ++L Q+++ NDY++FDQSQHGEAVVLE KM+R
Sbjct: 1440 DQKDCPAHIYKHCGKTPADLSIWCKTNLSH-QVYIENDYTSFDQSQHGEAVVLEVLKMQR 1498
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
L IP LI+LH ++KTN+ +QFGPLTCMRLTGEPGTYDDNTDYN+AVIYS+Y + +
Sbjct: 1499 LQIPKELIELHVHLKTNVDTQFGPLTCMRLTGEPGTYDDNTDYNLAVIYSQYSMGSTPCL 1558
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
VSGDDS+V+ PP +P W+A+ LL L FK LFCGYY+ P GA+R P
Sbjct: 1559 VSGDDSVVAGQPPVNPAWNAIKNLLHLKFKTHCSAYPLFCGYYVSPVGAVRNPHALFAKL 1618
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSK 706
DD ++P+K SYLSEF VGHS+G FW+ +P YQ+A+++FFCR CS+
Sbjct: 1619 MIAHDDGSIPEKKLSYLSEFSVGHSIGHEFWSAIPDSIHCYQAAVYNFFCRHCSR 1673
>UniRef50_P35928 Cluster: RNA replicase polyprotein; n=2; Erysimum
latent virus|Rep: RNA replicase polyprotein - Erysimum
latent virus (ELV)
Length = 1748
Score = 271 bits (664), Expect = 1e-71
Identities = 126/235 (53%), Positives = 158/235 (67%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
D +RP +++ + G TP+DL R+ S HL+ NDY+AFDQSQHGEAVV E KM R
Sbjct: 1444 DQLERPSHIYYHAGNTPHDLRRWCSKHLETSHC-TTNDYTAFDQSQHGEAVVFEVLKMRR 1502
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
LSIP +LI LH ++KTN+ +QFGPLTCMRLTGEPGTYDDNTDYN+AV+ +YD+
Sbjct: 1503 LSIPENLISLHVHLKTNVETQFGPLTCMRLTGEPGTYDDNTDYNLAVLNLQYDLRKTPTL 1562
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
VSGDDS +S +W V LL L K + +GLFCGYYLGP G IR P
Sbjct: 1563 VSGDDSYLSGTLSPRSNWPFVKELLHLRLKPSSLIDGLFCGYYLGPQGCIRNPLALFAKL 1622
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECSK 706
DD + DK+ SYL+EF +GH LGD W LLP+D V+YQSA FD+FCR+ ++
Sbjct: 1623 MIAEDDGSAFDKLPSYLTEFSIGHGLGDSLWQLLPSDLVLYQSACFDYFCRKATR 1677
>UniRef50_P20126 Cluster: RNA replicase polyprotein; n=3;
Tymovirus|Rep: RNA replicase polyprotein - Eggplant
mosaic virus
Length = 1839
Score = 267 bits (655), Expect = 2e-70
Identities = 124/234 (52%), Positives = 160/234 (68%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
DSKDRPP+++ + G+TP LS++ +HL ++ NDY+AFDQSQHGEAVVLE KM R
Sbjct: 1537 DSKDRPPHIYYHCGKTPSQLSQWCQTHLSGSS-YIANDYTAFDQSQHGEAVVLECLKMRR 1595
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
LSIP LI LH ++K ++ +QFGPLTCMRLTGEPGTYDDN+DYN+AVIYS+Y + +
Sbjct: 1596 LSIPDSLIQLHSHLKCSVDTQFGPLTCMRLTGEPGTYDDNSDYNLAVIYSQYSLNGHPIL 1655
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
+SGDDS++ PP P W + +L L FK E + LFCGYY+ P GA R P
Sbjct: 1656 ISGDDSVLCGTPPPSPLWPTLKKMLHLRFKIERTSHPLFCGYYVSPHGAARNPYALFAKL 1715
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECS 703
DD++L DK SYLSEF GH GD ++LP+ + YQSA+ DFFCR C+
Sbjct: 1716 MICVDDKSLHDKKLSYLSEFSTGHLAGDLVTSILPSHLLPYQSAVHDFFCRNCT 1769
>UniRef50_P20127 Cluster: RNA replicase polyprotein; n=11;
Tymovirus|Rep: RNA replicase polyprotein - Ononis yellow
mosaic virus
Length = 1776
Score = 263 bits (645), Expect = 3e-69
Identities = 123/234 (52%), Positives = 157/234 (67%)
Frame = +2
Query: 2 DSKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMER 181
D DRP ++ + G+TP +LS ++ S LK ++CNDY++FDQSQHGEAV+ E KM R
Sbjct: 1467 DHYDRPNFIYTHCGKTPSELSAWSHSFLKG-DAYICNDYTSFDQSQHGEAVIFESLKMHR 1525
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
+ IP HLIDLH Y+KTN+++QFGPLTCMRLTGEPGTYDDNTDYN+AVI+S+Y I+ +
Sbjct: 1526 VGIPRHLIDLHIYLKTNVSTQFGPLTCMRLTGEPGTYDDNTDYNLAVIFSQYVISDHPIM 1585
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
VSGDDS++ PP +P+W AV LL L FK E LFCGYY+GP G R P
Sbjct: 1586 VSGDDSVICGHPPINPNWPAVEKLLHLRFKTEETSLPLFCGYYVGPTGCCRNPFALFAKL 1645
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECS 703
D L + + SYL EF +GH LGD L P + Y SA +D FCR+C+
Sbjct: 1646 MISYDKGNLFETLPSYLYEFSIGHRLGDVVRLLFPDHLLKYYSACWDLFCRKCT 1699
>UniRef50_P36352 Cluster: RNA replicase polyprotein; n=2; Physalis
mottle virus|Rep: RNA replicase polyprotein - Physalis
mottle virus (PhMV) (Belladonna mottle virus-Iowa)
Length = 178
Score = 114 bits (274), Expect = 2e-24
Identities = 52/103 (50%), Positives = 62/103 (60%)
Frame = +2
Query: 395 PPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPD 574
PP P+W A+ LL L FK E + LFCGYYL PAG IR P DD +LP+
Sbjct: 6 PPISPNWPAIKDLLHLKFKTEITSSPLFCGYYLSPAGCIRNPLAHFAKLMTCVDDMSLPE 65
Query: 575 KIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCRECS 703
K+ SYLSE +GH+LGD LP + YQSA FDFFCR C+
Sbjct: 66 KVLSYLSEVSIGHNLGDQIIQHLPPHLIQYQSACFDFFCRNCT 108
>UniRef50_Q80QV2 Cluster: RNA-dependent RNA polymerase; n=1; Oyster
mushroom spherical virus|Rep: RNA-dependent RNA
polymerase - Oyster mushroom spherical virus
Length = 1581
Score = 111 bits (268), Expect = 1e-23
Identities = 74/222 (33%), Positives = 102/222 (45%), Gaps = 2/222 (0%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIH-VCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
P ++ YGG DL ++A H+ + NDY+A+D+S GE + E M +IP
Sbjct: 1296 PDHVMHYGGMDLNDLGQWAREHVPSKRTKSFTNDYTAYDKSCRGETLAFEICIMRLFNIP 1355
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF-VSG 370
+I+LH + +TS G L MR +G+ TY NT YN A +Y T SG
Sbjct: 1356 EWIIELHVELTLCVTSALGKLGIMRTSGQWCTYLFNTWYNDAYFTLKYVFPLNTPRGFSG 1415
Query: 371 DDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXX 550
DD + P P W ++S SL K FCG+ L G IR P
Sbjct: 1416 DDMFILCVPTISPGWLSISRYFSLVGKPVITFLPEFCGWLLTSHGIIRHPYLLYAKYLFH 1475
Query: 551 XDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSAL 676
++ TL + + SY EF +LGD W LP D + YQ L
Sbjct: 1476 KENGTLANVLISYYMEFQHSLTLGDALWESLPYDLLPYQGQL 1517
>UniRef50_Q9DRA1 Cluster: Replicase; n=1; Botrytis virus F|Rep:
Replicase - Botrytis virus F
Length = 1896
Score = 106 bits (254), Expect = 6e-22
Identities = 61/226 (26%), Positives = 99/226 (43%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
PP+++++ +T D +F ++H + DY+A+D SQ V E M RL P
Sbjct: 1642 PPHVYIHSRRTNEDFEKFVAAHWDHTRESTDGDYTAYDASQDATFVNFETLLMRRLDFPL 1701
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDD 376
+I+ + +K +ITS FGPL MR +GE TY NT NIA Y++Y++ + GDD
Sbjct: 1702 DIIEAYVEMKASITSHFGPLAIMRFSGEVWTYLFNTLGNIAFTYAKYEVPSVAQVYGGDD 1761
Query: 377 SLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXD 556
++ P W + +L K FCG+ + P G ++ P+
Sbjct: 1762 KSINSPITVRTGWSQLVGKFNLVEKPVVGYEPTFCGWRIVPGGIVKDPQLLFWRTRYARI 1821
Query: 557 DRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCR 694
Y E V+ D + + + Y AL F+ +
Sbjct: 1822 RYDAALWAPGYYDELVLSLKTSDRLMDHMSPNDLAYLQALVRFYTK 1867
>UniRef50_P20951 Cluster: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=3;
Potexvirus|Rep: RNA replication protein (176 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Papaya mosaic
potexvirus (PMV)
Length = 1547
Score = 101 bits (243), Expect = 1e-20
Identities = 67/226 (29%), Positives = 106/226 (46%), Gaps = 9/226 (3%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASS---HLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERL 184
+P ++ + TP DLS +A+ H K + ND++AFDQSQ G + E K
Sbjct: 1294 QPAHIRINCEMTPEDLSSWAAGEGGHWKFKGPSLANDFTAFDQSQDGAMLQFEILKARHH 1353
Query: 185 SIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTV-F 361
SIP ++D + IKTN G L MRLTGE T+D NT+ NIA +++++I T
Sbjct: 1354 SIPEDILDAYLTIKTNSKIFLGTLAIMRLTGEGPTFDANTECNIAFTHTKFNIPEGTAQL 1413
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRX 526
+GDDS + P P + + L+L K + FCG+ + P G I+ P+
Sbjct: 1414 YAGDDSAIDGLPALRPSFKMIEQKLTLRSKPQVALQQKGDWAEFCGFRITPKGLIKDPKK 1473
Query: 527 XXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIY 664
+ + + SY + + + D LL +++ Y
Sbjct: 1474 LHASWMLEKKKGNVKNVLRSYELDLALAYQHKDSLHELLSEEELKY 1519
>UniRef50_O55601 Cluster: Replicase; n=4; Allexivirus|Rep: Replicase -
Garlic virus C
Length = 1550
Score = 97.1 bits (231), Expect = 4e-19
Identities = 57/217 (26%), Positives = 100/217 (46%), Gaps = 2/217 (0%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
+P N+F+ +TP + F + + + +DY+ +DQSQ + E +K +P
Sbjct: 1229 QPDNVFIMCEKTPEQFNSFVLTKWDFTRPNYTSDYTQYDQSQDAAFLNFELRKARHFGVP 1288
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIA--VIYSEYDITTQTVFVS 367
++D + +IKT+ + G L MRL+GE T+D NT+ NIA + + D T + + +
Sbjct: 1289 EEVVDFYAFIKTHAKTFLGNLAVMRLSGEGPTFDANTECNIAYDALRFQLDSTVKACY-A 1347
Query: 368 GDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXX 547
GDD + P W PL SL K FCG+ L G +++P
Sbjct: 1348 GDDLVRDKACDERPGWKYSEPLFSLKAKPLVTNKPDFCGWRLTKYGIVKSPVQLYQSLQL 1407
Query: 548 XXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQV 658
+ + SY +++ + LGD + + D++
Sbjct: 1408 ALRLGKVEEVKRSYAIDYLFAYRLGDQLYDIFDEDEL 1444
>UniRef50_P28897 Cluster: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (150 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Strawberry mild
yellow edge-associated virus (SMYEaV)
Length = 1323
Score = 95.9 bits (228), Expect = 9e-19
Identities = 65/220 (29%), Positives = 104/220 (47%), Gaps = 6/220 (2%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
+P N+F+ +TP DL +A ++ + ND++AFDQSQ G + E K + +IP
Sbjct: 1077 QPSNIFINCEKTPADLDEWAKANWNFEGLAHSNDFTAFDQSQDGAMLQFEVIKAKFHNIP 1136
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SG 370
S +I+ + +KTN G L MRL+GE T+D NT+ +IA +++Y + V +G
Sbjct: 1137 SDIINSYVELKTNAKVFLGVLKIMRLSGEGPTFDANTECSIAYHHTKYWVEPDVAQVYAG 1196
Query: 371 DDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXX 535
DDS P P ++ + L L K R FCG+ + P G I+ P
Sbjct: 1197 DDSAQDRTPVPRPSFNKIKDRLGLVSKPLTHRQVPGDFATFCGWIITPKGVIKDPLKLYA 1256
Query: 536 XXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQ 655
+ SY + + + LGD ++L D+
Sbjct: 1257 SLQLAIRRGKSHEVALSYAHDAGLAYRLGDDLHSVLTFDE 1296
>UniRef50_Q07518 Cluster: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Potexvirus|Rep: RNA replication protein (156 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Plantago asiatica
mosaic potexvirus (P1AMV)
Length = 1385
Score = 95.5 bits (227), Expect = 1e-18
Identities = 65/225 (28%), Positives = 107/225 (47%), Gaps = 12/225 (5%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P N+ + +TP DLSR+ ++ + ND++AFDQSQ G + E K + ++P
Sbjct: 1138 PNNIMINCEKTPQDLSRWVLNYWDFSKPSYANDFTAFDQSQDGAMLQFEILKAKYFNLPE 1197
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SGD 373
+I+ + IK + G L+ MRLTGE T+D NT+ NIA ++ +DI T + +GD
Sbjct: 1198 WVIEGYLDIKLSPKIFLGTLSIMRLTGEGPTFDANTECNIAYTHTRFDIPEGTAQIYAGD 1257
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXXX 538
D ++ P P + + ++L K + FCGY + P G I+ P
Sbjct: 1258 DCAIAQVCPEKPSFALLKNRIALQAKPAYTPQERGQWAEFCGYLITPKGLIKDPLKLHAS 1317
Query: 539 XXXXXDDR------TLPDKIASYLSEFVVGHSLGDPFWTLLPADQ 655
+ + + +A+Y + + +SLGD LL Q
Sbjct: 1318 LELAKAQKKAGVRDAITNVVANYSLDAKLAYSLGDDLQDLLSPHQ 1362
>UniRef50_Q6RBY9 Cluster: Replicase; n=2; Poplar mosaic virus|Rep:
Replicase - Poplar mosaic virus
Length = 1992
Score = 95.1 bits (226), Expect = 2e-18
Identities = 57/204 (27%), Positives = 95/204 (46%), Gaps = 1/204 (0%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
PPN +++ G++ +L + + K + +DY AFD SQ + E M+ L +P+
Sbjct: 1749 PPNFYIHSGKSLEELDAWVKRY-KFSGVCTESDYEAFDASQDQYIMAFELAVMKHLRLPA 1807
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT-TQTVFVSGD 373
LI+ + YIKT++ S+ G MR +GE T+ NT N+ + YD+ ++ V +GD
Sbjct: 1808 DLIEDYKYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFMRYDMNGSEAVCFAGD 1867
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXX 553
D S + D L L K +F FCG+ L P G + P+
Sbjct: 1868 DMCASKHLRVQSEHDKFLDKLKLKAKVQFTEKPTFCGWNLCPDGIYKKPQLVLERMCIAR 1927
Query: 554 DDRTLPDKIASYLSEFVVGHSLGD 625
+ L + I +Y E + +G+
Sbjct: 1928 ETNNLANCIDNYAIEVAFAYKMGE 1951
>UniRef50_P09395 Cluster: RNA replication protein (165 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=17; Potato virus
X|Rep: RNA replication protein (165 kDa protein) (ORF 1
protein) [Includes: RNA-directed RNA polymerase (EC
2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus X (PVX)
Length = 1456
Score = 95.1 bits (226), Expect = 2e-18
Identities = 59/175 (33%), Positives = 89/175 (50%), Gaps = 6/175 (3%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
+P +F+ TP D+S +A ++ + + NDY+AFDQSQ G + E K + IP
Sbjct: 1209 QPKEVFINCETTPEDMSAWALNNWNFSRPSLANDYTAFDQSQDGAMLQFEVLKAKHHCIP 1268
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SG 370
+I + IKTN G L+ MRLTGE T+D NT+ NIA ++++DI T V +G
Sbjct: 1269 EEIIQAYIDIKTNAHIFLGTLSIMRLTGEGPTFDANTECNIAYTHTKFDIPAGTAQVYAG 1328
Query: 371 DDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGL-----FCGYYLGPAGAIRAP 520
DDS + P + + L L K + FCG+ + P G ++ P
Sbjct: 1329 DDSALDCVPEVKHSFHRLEDKLLLKSKPVITQQKKGSWPEFCGWLITPKGVMKDP 1383
>UniRef50_P15095 Cluster: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (186 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Narcissus mosaic
virus (NMV)
Length = 1643
Score = 94.7 bits (225), Expect = 2e-18
Identities = 64/210 (30%), Positives = 97/210 (46%), Gaps = 6/210 (2%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
+P N+F+ TP DL +F S + ND++AFDQSQ G + E K + +IP
Sbjct: 1345 QPDNIFINCETTPEDLDKFIKSQWDFSRPAHTNDFTAFDQSQDGAMLQFEVIKAKFFNIP 1404
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SG 370
+ +I+ + YIK N G L MRL+GE T+D NT+ +IA + + IT T V +G
Sbjct: 1405 AEIIEGYIYIKLNAAIFLGTLGIMRLSGEGPTFDANTECSIAYNATRFHITDDTAQVYAG 1464
Query: 371 DDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXX 535
DD + ++ + L LT K F + FCG+ + PAG I+
Sbjct: 1465 DDMALDRVSIEKDSFNRLEKQLKLTSKPMFPKQVKGDYAEFCGWVMTPAGIIKHSLKMHA 1524
Query: 536 XXXXXXDDRTLPDKIASYLSEFVVGHSLGD 625
+ + SY + + LGD
Sbjct: 1525 SIQLQKKINNIKESARSYALDLRYAYKLGD 1554
>UniRef50_Q6UNI1 Cluster: Replication-associated protein; n=4;
Potexvirus|Rep: Replication-associated protein - Opuntia
virus X
Length = 1555
Score = 94.3 bits (224), Expect = 3e-18
Identities = 57/175 (32%), Positives = 83/175 (47%), Gaps = 6/175 (3%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
+P N+F+ +TP D+ R+A H ++ NDY+AFDQSQ G + E K IP
Sbjct: 1312 QPANIFINCERTPEDMDRWAREHWNFNRLSYANDYTAFDQSQDGAMLQFEVLKARHHCIP 1371
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTV-FVSG 370
I+ + +K + + G L MRLTGE T+D NT+ NIA ++ I +G
Sbjct: 1372 EEFIEGYIDLKCSSKTFLGILKIMRLTGEGPTFDANTECNIAFAHTMLRIPKNAAQLYAG 1431
Query: 371 DDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAP 520
DD P P + + +SL K F R FCG + P G ++ P
Sbjct: 1432 DDCAFDISPDQKPSFKKIETEISLKAKPSFKRQIKGEWAEFCGMLITPLGVVKDP 1486
>UniRef50_Q2V0S0 Cluster: Replicase protein; n=2; Nerine virus X|Rep:
Replicase protein - Nerine virus X
Length = 1504
Score = 93.1 bits (221), Expect = 6e-18
Identities = 63/228 (27%), Positives = 108/228 (47%), Gaps = 7/228 (3%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
+P +F+ + P D+++F + ND++AFDQSQ G + E K + +P
Sbjct: 1264 QPAEIFINCEKNPEDMTQFIKQGWNFKRQAYSNDFTAFDQSQDGAMLQFEVIKAKHYGVP 1323
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQT-VFVSG 370
+ +I+ + +IK N G L MRL+GE T+D NT+ +IA ++ + + + T F +G
Sbjct: 1324 ADIIEGYLHIKMNAKIFLGTLAIMRLSGEGPTFDANTECSIAYHHTRFHVPSNTRRFFAG 1383
Query: 371 DDSLVSPPPPAHPDWDAVSPLLSLTFK-----KEFVRNGLFCGYYLGPAGAIRAPRXXXX 535
DDS P + A+S +SLT K ++ + FCG+ + P G I+ P
Sbjct: 1384 DDSAQDCPAVEKSSFQAISGRMSLTSKPVSYAQKPGKFAEFCGWSITPLGVIKDPLKLYA 1443
Query: 536 XXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQ-VIYQSAL 676
+ SY + + LGD +L +Q V++Q +
Sbjct: 1444 SLELACRTDNKENVAQSYALDAKHAYQLGDALHDILTPEQFVMHQKTI 1491
>UniRef50_Q0Z8V5 Cluster: ORF 1; n=1; Chenopodium mosaic virus X|Rep:
ORF 1 - Chenopodium mosaic virus X
Length = 1571
Score = 91.1 bits (216), Expect = 2e-17
Identities = 58/173 (33%), Positives = 89/173 (51%), Gaps = 6/173 (3%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
+P N+F+ TP DL++F + + ND++AFDQSQ G + E K + +IP
Sbjct: 1305 QPDNIFINCEATPEDLNKFVKTKWHFNRPAHTNDFTAFDQSQDGAMLQFEVMKAKFFNIP 1364
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SG 370
+ +I+ + YIK N G L MRL+GE T+D NT+ +IA + + I T V +G
Sbjct: 1365 ADIIEGYIYIKLNAVIFLGTLGIMRLSGEGPTFDANTECSIAYNATRFHIEDDTAQVYAG 1424
Query: 371 DDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIR 514
DD + + ++ L LT K +F R FCG+ L PAG ++
Sbjct: 1425 DDMALDRISTEKSSFAKLAHQLKLTSKPQFPRQVRGDYAEFCGWVLTPAGILK 1477
>UniRef50_O37153 Cluster: RNA replicase; n=18; Cymbidium mosaic
virus|Rep: RNA replicase - Cymbidium mosaic virus
Length = 1417
Score = 90.6 bits (215), Expect = 3e-17
Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 7/222 (3%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
+P ++F+ +TP D ++F H Q+ ND++AFDQSQ + E K +IP
Sbjct: 1138 QPAHIFINCEKTPEDFNKFILEHWSYKQVAHTNDFTAFDQSQDAAMLQFEVIKARYFNIP 1197
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQ-TVFVSG 370
+I+ + IK G L+ MRL+GE T+D NT+ +IA + Y I T +G
Sbjct: 1198 EDVIEGYIQIKLTAEIFLGTLSIMRLSGEGPTFDANTECSIAYNATRYHINEDVTQVYAG 1257
Query: 371 DDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXX 535
DD + P + A+ L LT K + + FCG+ + P G I+ P+
Sbjct: 1258 DDMAMDHVCPEKKSFKALEKKLKLTSKPLYPKQKPGDWADFCGWTITPYGIIKNPKKLDA 1317
Query: 536 XXXXXXDDRTLPDKIA-SYLSEFVVGHSLGDPFWTLLPADQV 658
DK+A SY + + LGD +L D++
Sbjct: 1318 CLQLHTQLGD-ADKVARSYALDAKYAYDLGDRIHEVLDVDEM 1358
>UniRef50_Q8BF56 Cluster: RNA-dependent RNA polymerase; n=3; root|Rep:
RNA-dependent RNA polymerase - Tulip virus X
Length = 1361
Score = 89.4 bits (212), Expect = 7e-17
Identities = 64/225 (28%), Positives = 102/225 (45%), Gaps = 12/225 (5%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P N+ + +TP DLSR+ +H + ND++AFDQSQ G + E K + ++P
Sbjct: 1114 PNNIMINCERTPADLSRWVRNHWDFTKPXYANDFTAFDQSQDGAMLQFEILKAKFFNLPE 1173
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTV-FVSGD 373
+I+ + IK G L MRLTGE T+D NT+ NIA ++ + I +GD
Sbjct: 1174 WVIEGYLDIKLTPQIFTGTLAIMRLTGEGPTFDANTECNIAYTHTRFHIPDHVAQLYAGD 1233
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXXX 538
D ++ P + + ++L K + FCGY + P G I+ P
Sbjct: 1234 DCAIAEVCQEKPSFALLKNRIALQAKPAYAPQTRGAWAEFCGYLITPKGLIKDPLKLHSS 1293
Query: 539 XXXXXDDR------TLPDKIASYLSEFVVGHSLGDPFWTLLPADQ 655
R + + +A+Y + + +SLGD LL +Q
Sbjct: 1294 LELAKALRKQGRKDAITNVVANYSLDAKMAYSLGDDLQDLLSPEQ 1338
>UniRef50_P15402 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - White clover
mosaic virus (strain O) (WCMV)
Length = 1294
Score = 88.6 bits (210), Expect = 1e-16
Identities = 60/209 (28%), Positives = 94/209 (44%), Gaps = 6/209 (2%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P +FV TP D + F + ND++AFDQSQ G + E K + +IP
Sbjct: 1045 PRKIFVNCETTPADFNSFILDEWNFNRTCFSNDFTAFDQSQDGSILQFEVIKAKFHNIPE 1104
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SGD 373
+I+ + IKT+ G L+ MRL+GE T+D NT+ NIA +++++I V +GD
Sbjct: 1105 DVIEGYIQIKTHAKIFLGTLSIMRLSGEGPTFDANTEANIAYTHTKFNIPCDAAQVYAGD 1164
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXXX 538
D + P ++ + L+ L K F FCG+ + P G I+ P
Sbjct: 1165 DMSIDYVASVKPSFNMIEHLMKLKGKPVFNTQTQGDFAEFCGWTISPKGIIKKPEKMNMS 1224
Query: 539 XXXXXDDRTLPDKIASYLSEFVVGHSLGD 625
+ + SY + + LGD
Sbjct: 1225 IELQKNINKFHEVKRSYALDHAFAYQLGD 1253
>UniRef50_Q6YNQ7 Cluster: 158kDa replicase; n=1; Botrytis virus X|Rep:
158kDa replicase - Botrytis virus X
Length = 1413
Score = 87.8 bits (208), Expect = 2e-16
Identities = 56/220 (25%), Positives = 96/220 (43%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
+P N+F+ +T + F + +DY+ +D+SQ G + E +K +P
Sbjct: 1117 QPDNVFIMCEKTSNQFNDFVKDWNFERDNYT-SDYTQYDKSQDGLFLNFELRKARHFGVP 1175
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGD 373
++D + IKT+ L MRL+GE T+D NT+ NIA + + ++ +GD
Sbjct: 1176 QAVLDAYTAIKTDAKVFADTLKIMRLSGEGPTFDANTECNIAYDAARFQLSDVKACYAGD 1235
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXX 553
D P W +S +L K R FCG+ L G ++ P+
Sbjct: 1236 DLARDRNCPERASWKYISHQFTLQAKPLVTRKPDFCGWSLTKHGIVKNPKQLWQSMQLGL 1295
Query: 554 DDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSA 673
L D + SY +F ++LGD + + +++ Y A
Sbjct: 1296 KLDKLKDIVPSYSLDFHHAYALGDKVYDIFTEEEMAYHQA 1335
>UniRef50_Q6YI57 Cluster: Polyprotein; n=1; Sclerotinia sclerotiorum
debilitation-associated RNA virus|Rep: Polyprotein -
Sclerotinia sclerotiorum debilitation-associated RNA
virus
Length = 1700
Score = 87.0 bits (206), Expect = 4e-16
Identities = 69/220 (31%), Positives = 99/220 (45%), Gaps = 8/220 (3%)
Frame = +2
Query: 20 PNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSH 199
PN++++ +T D S + + ND AFD SQ G V ER E L +P
Sbjct: 1344 PNVYLHREKTEQDFSTWVKNGWNFSGHATINDCEAFDASQDGAFVEFERLHAEFLGVPRE 1403
Query: 200 LIDLHCYIKTNITSQF--GPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SG 370
LID Y+ T I S G ++ MRL+GE TYD NT N+A + ++Y I + + SG
Sbjct: 1404 LIDF--YVDTKIKSYIWRGTISVMRLSGEGPTYDFNTWANMAFMATKYSIPSVAMTAYSG 1461
Query: 371 DD---SLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGL--FCGYYLGPAGAIRAPRXXXX 535
DD V PA + + L F K R FCG + P G I+ PR
Sbjct: 1462 DDFACDQVLSVKPAFKELECRFKLKEKRFLKSQGRGSYADFCGMIITPNGVIKNPRKLYL 1521
Query: 536 XXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQ 655
+ T+ I +Y ++ SLGD ++ L A +
Sbjct: 1522 SLKSHDEIGTIDKAIVNYYNDLRTLISLGDNIFSALDATE 1561
>UniRef50_Q993S7 Cluster: RNA-dependant RNA polymerase; n=74; Banana
mild mosaic virus|Rep: RNA-dependant RNA polymerase -
Banana mild mosaic virus
Length = 1771
Score = 86.6 bits (205), Expect = 5e-16
Identities = 54/208 (25%), Positives = 96/208 (46%), Gaps = 1/208 (0%)
Frame = +2
Query: 5 SKDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERL 184
+++ P N +++ G+ DL+ + + + + +DY AFD SQ + + E M R+
Sbjct: 1514 NENLPKNFYIHNGKNFDDLNDYVKKNNFSGRC-IESDYEAFDASQDSQILAFEVAIMRRM 1572
Query: 185 SIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT-TQTVF 361
++P ID + ++K N+ S+ G + MR TGE T+ NT NI YD+ + +
Sbjct: 1573 NMPQEFIDDYVWLKCNLRSKLGNMAIMRFTGEAATFLFNTMANIVFTIMAYDLKGDECIL 1632
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXX 541
+GDD ++ A+ + + L L K FCG+ L G + P+
Sbjct: 1633 FAGDDMCMNTVRRANNSYTHILKNLKLKAKVGITEEPTFCGWRLTIHGIYKRPQLILERF 1692
Query: 542 XXXXDDRTLPDKIASYLSEFVVGHSLGD 625
++ L + I +Y E + LGD
Sbjct: 1693 MIAIENGNLENCIDNYAIECSYAYKLGD 1720
>UniRef50_Q918W3 Cluster: Putative RNA-dependent RNA polymerase RdRp;
n=1; Indian citrus ringspot virus|Rep: Putative
RNA-dependent RNA polymerase RdRp - Indian citrus
ringspot virus
Length = 1658
Score = 85.4 bits (202), Expect = 1e-15
Identities = 56/196 (28%), Positives = 93/196 (47%), Gaps = 7/196 (3%)
Frame = +2
Query: 110 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 289
ND+ AFDQSQ + E K + SIP +I + ++K + G + MRL+GE T
Sbjct: 1442 NDFEAFDQSQDANMLQFELIKAKFHSIPEEIIAGYKHLKCHAHIFLGTIAIMRLSGEGPT 1501
Query: 290 YDDNTDYNIAVIYSEYDITTQTV-FVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 466
+D NT+ +IA ++ Y + +GDDS + P P + +SP LSL K + +R
Sbjct: 1502 FDANTECSIAYNHTRYFVPKGCAQLYAGDDSACAAPLSEKPSFQHISPELSLKSKAK-IR 1560
Query: 467 N------GLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDP 628
+ FCG+ + P G I+ P ++ L D +Y + + + L D
Sbjct: 1561 SQTKGDYATFCGWLITPKGFIKNPTQLYASWLLAKHNKDLQDVARNYALDLRIAYQLKDE 1620
Query: 629 FWTLLPADQVIYQSAL 676
+ LL +++ + L
Sbjct: 1621 LYELLSPEELDHHQLL 1636
>UniRef50_Q65980 Cluster: RNA replicase; n=85; Flexiviridae|Rep: RNA
replicase - Cherry virus A
Length = 2342
Score = 85.4 bits (202), Expect = 1e-15
Identities = 55/227 (24%), Positives = 105/227 (46%), Gaps = 1/227 (0%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P N +++ + +L R+ S+ + +DY A+D SQ + E K + L+ +
Sbjct: 1392 PGNFYIHQKKNFDELERWVKSY-NFSGVCTESDYKAYDASQDSCTLAFEYKLLRYLAFSN 1450
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDI-TTQTVFVSGD 373
LI+ + Y+K ++ + G L +R TGE T+ NT N+ + +YD+ T + +GD
Sbjct: 1451 SLIEDYLYLKMHLNCKLGNLAIIRFTGEFCTFLFNTLTNMLFTFMKYDVRKTHAICFAGD 1510
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXX 553
D + P + ++ ++ SL K +F R+ FCG+ L G ++ P
Sbjct: 1511 DMCANVRLPENHEYSSLLKKFSLKAKVDFTRSPTFCGWNLSRYGIVKKPELIAARLAVAR 1570
Query: 554 DDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCR 694
+ + SY E + ++ GD + +L ++ + L FF +
Sbjct: 1571 QKGEVNLVLDSYFLEHLYAYNKGDHLFEILSEKELEHHYNLTRFFVK 1617
>UniRef50_O55597 Cluster: Replicase; n=1; Garlic virus A|Rep:
Replicase - Garlic virus A
Length = 1625
Score = 85.4 bits (202), Expect = 1e-15
Identities = 54/216 (25%), Positives = 95/216 (43%), Gaps = 1/216 (0%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
+P N+F+ +TP + F + + + +DY+ +DQSQ + E +K L +P
Sbjct: 1304 QPDNVFIMCERTPDQFNNFVLTKWDFSRPNYTSDYTQYDQSQDAPFLNFELRKARHLGVP 1363
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQT-VFVSG 370
++ + +IKT+ + G L MRL+GE T+D NT+ NIA + + +G
Sbjct: 1364 DEVLSFYKFIKTHAKTFVGNLAIMRLSGEGPTFDANTECNIAYDALRFRLDDNVRACYAG 1423
Query: 371 DDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXX 550
DD + W L SL K FCG+ L P G +++P
Sbjct: 1424 DDLVRDRACEERAGWVYSERLFSLKAKPLVTSKPDFCGWRLTPHGIVKSPIQLYQSLQLA 1483
Query: 551 XDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQV 658
+ D SY +++ + LGD + + +++
Sbjct: 1484 LRLGKVEDVKRSYAIDYLFAYRLGDKLYDIFDEEEL 1519
>UniRef50_Q9IH80 Cluster: Replicase; n=10; Foveavirus|Rep: Replicase -
Cherry necrotic rusty mottle virus
Length = 2038
Score = 84.6 bits (200), Expect = 2e-15
Identities = 55/209 (26%), Positives = 97/209 (46%), Gaps = 3/209 (1%)
Frame = +2
Query: 8 KDRPPNLFVYGGQTPYDLSRFASSHLKPLQIHVC--NDYSAFDQSQHGEAVVLERKKMER 181
K P NL+++ G+ DL + ++ + C +DY AFD SQ + E M
Sbjct: 1783 KALPRNLYIHSGKNFDDLQDWV---IQNNFVGTCTESDYEAFDSSQDANILAFEVSLMNY 1839
Query: 182 LSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT-TQTV 358
L++P LI+ + ++K N S+ G MR TGE GT+ NT N+ + Y+ + +++
Sbjct: 1840 LNLPRDLIEDYKHLKFNTHSKLGRFAVMRFTGEAGTFLFNTLANMVFTFMRYETSGRESI 1899
Query: 359 FVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXX 538
+GDD + D++ V ++L K ++ FCG+ LG G ++ P+
Sbjct: 1900 CFAGDDMCANKLLRKKGDFEHVLNRMTLKAKVQYTTEPTFCGWRLGSFGIVKRPQLVQER 1959
Query: 539 XXXXXDDRTLPDKIASYLSEFVVGHSLGD 625
+ + I +Y E + LG+
Sbjct: 1960 ILIALEKGNFIECIDNYAIEVSYAYKLGE 1988
>UniRef50_Q5K4J4 Cluster: RNA-directed RNA polymerase; n=154; Pepino
mosaic virus|Rep: RNA-directed RNA polymerase - Pepino
mosaic virus
Length = 1439
Score = 84.6 bits (200), Expect = 2e-15
Identities = 63/221 (28%), Positives = 98/221 (44%), Gaps = 7/221 (3%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
+P ++F+ T DL++F + ND++AFDQSQ G + E K + +IP
Sbjct: 1188 QPKHIFINCETTTDDLNQFVKQGWNFNRTAQTNDFTAFDQSQDGAMLQFEVMKAKFFNIP 1247
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEY--DITTQTVFVS 367
+ +I+ + IK N G L+ MRL+GE T+D NT+ +IA + Y D T + V+ +
Sbjct: 1248 ADIIEGYINIKLNAKIFLGTLSIMRLSGEGPTFDANTECSIAYTATRYHLDSTVKQVY-A 1306
Query: 368 GDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXX 532
GDD + P + + L LT K F + FCG+ P G I+ P
Sbjct: 1307 GDDMALDGVVQEKPSFKNLQNKLKLTSKTLFPKQVKGDYAEFCGWTFTPGGIIKNPLKMH 1366
Query: 533 XXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQ 655
L SY + + +GD L D+
Sbjct: 1367 ASIMLQEAIGNLHTAARSYAIDMKHSYQMGDELHDYLTPDE 1407
>UniRef50_Q85214 Cluster: Replicase; n=1; Potato virus T|Rep:
Replicase - Potato virus T
Length = 248
Score = 84.2 bits (199), Expect = 3e-15
Identities = 53/176 (30%), Positives = 81/176 (46%), Gaps = 1/176 (0%)
Frame = +2
Query: 110 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 289
+DY AFD+SQ + LE + ++ LID + +K + + G + MR TGE GT
Sbjct: 9 SDYEAFDRSQDAIILGLEIECLKLFGWDQDLIDDYRKLKLWMGCRLGAIAIMRFTGEFGT 68
Query: 290 YDDNTDYNIAVIYSEYDITTQTVFV-SGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 466
+ NT NIA Y+IT TV +GDD S D + + L+L K +F
Sbjct: 69 FFFNTIANIAFTCLRYNITRDTVIAFAGDDMYASGKLEIRKDREDLLAHLTLKAKVQFTE 128
Query: 467 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGDPFW 634
+FCG+Y+ G ++ PR + + +Y E G+ LG+ W
Sbjct: 129 KPMFCGWYIKKMGIVKEPRLVLERWLIAERKKVIDQCFINYSIEVSYGYRLGEYLW 184
>UniRef50_Q9E948 Cluster: RNA polymerase; n=17; Flexiviridae|Rep: RNA
polymerase - Apple stem pitting virus
Length = 2185
Score = 83.8 bits (198), Expect = 4e-15
Identities = 55/204 (26%), Positives = 92/204 (45%), Gaps = 1/204 (0%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P NL+++ G+ DL+ + ++H K + +DY AFD SQ + E + M+ L +P
Sbjct: 1938 PKNLYIHSGKNIDDLAEWVTAH-KFNGVCTESDYEAFDASQDHFILAFELEVMKFLGLPP 1996
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT-TQTVFVSGD 373
LI + +IKT++ S+ G MR TGE T+ NT N+ + YD+ + + +GD
Sbjct: 1997 DLIADYTFIKTHLGSKLGNFAIMRFTGEASTFLFNTMANMLFTFLRYDLNGKEAICFAGD 2056
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXX 553
D + + L K +F FCG+ L G + P
Sbjct: 2057 DMCANSRLKVTNQHAKFLDKIKLKAKVQFTITPTFCGWGLCEHGVFKKPDLVLERLQIAR 2116
Query: 554 DDRTLPDKIASYLSEFVVGHSLGD 625
+ R L + I +Y E + +G+
Sbjct: 2117 ETRNLENCIDNYAIEVSCAYKMGE 2140
>UniRef50_Q5GR28 Cluster: Replicase; n=1; Hosta virus X|Rep: Replicase
- Hosta virus X
Length = 1507
Score = 83.8 bits (198), Expect = 4e-15
Identities = 65/221 (29%), Positives = 96/221 (43%), Gaps = 8/221 (3%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P ++ + +TP +S F + ND++AFDQSQ G + E K + +IP
Sbjct: 1247 PKHILINCEKTPTQISDFVKAQWDFSDFAYANDFTAFDQSQDGAMLQFEIIKAKFHNIPE 1306
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFV-SGD 373
+I + IKTN G L MRLTGE T+D NT+ NIA + +++ V +GD
Sbjct: 1307 DIILGYMDIKTNAKIFLGTLAIMRLTGEGPTFDANTECNIAYTHLRFNVPENVAQVYAGD 1366
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAPRXXXXX 538
DS +S P + + L+L K + FCG + P G I+ P
Sbjct: 1367 DSALSKVCPEKDSFKQFADRLTLKSKPQVFPQTQGAWAEFCGLLITPRGIIKDPVKLHAS 1426
Query: 539 XXXXXDDRTLPD--KIASYLSEFVVGHSLGDPFWTLLPADQ 655
TL + SY + + + LGD LL Q
Sbjct: 1427 WVLATKLGTLQQIKCVNSYGEDLKLSYDLGDHLQELLSESQ 1467
>UniRef50_Q65005 Cluster: ORF1=155k; n=10; Bamboo mosaic virus|Rep:
ORF1=155k - Bamboo mosaic virus
Length = 1365
Score = 82.6 bits (195), Expect = 9e-15
Identities = 50/160 (31%), Positives = 79/160 (49%), Gaps = 6/160 (3%)
Frame = +2
Query: 62 SRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITS 241
S++ +H K ++ ND+ A+DQSQ G + E K +P+ LI+ + +K N
Sbjct: 1125 SKWVDTHWKFDRLAYTNDFEAYDQSQDGAMLQFEVMKARHHDLPADLIESYIELKLNAKI 1184
Query: 242 QFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTV-FVSGDDSLVSPPPPAHPDWD 418
G L MRLTGE T+D NT+ NIA ++ + I T +GDD ++ P +
Sbjct: 1185 FLGTLGIMRLTGEGPTFDANTECNIAYTHARFHIPRGTAQLYAGDDCALNCEPEERESFK 1244
Query: 419 AVSPLLSLTFKKEFVRNGL-----FCGYYLGPAGAIRAPR 523
++ +L K +R G FCG + P G ++ PR
Sbjct: 1245 PLAAQFTLKSKPVTIRQGKGSWPEFCGNIITPYGYLKHPR 1284
>UniRef50_Q5L4G0 Cluster: RNA dependent RNA polymerase; n=1; Sweet
potato chlorotic fleck virus|Rep: RNA dependent RNA
polymerase - Sweet potato chlorotic fleck virus
Length = 2090
Score = 82.6 bits (195), Expect = 9e-15
Identities = 54/215 (25%), Positives = 98/215 (45%), Gaps = 1/215 (0%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P N +++ G++ +L+ + + ++ +DY AFD SQ + E ME L +P
Sbjct: 1846 PKNYYIHSGKSLDELNNWVIGN-DFTRVCTESDYEAFDASQDAYILAFEICLMEHLCLPR 1904
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT-TQTVFVSGD 373
LI+ + YIKT++ S+ G + MR +GE T+ NT N+ + +YD+ ++++ +GD
Sbjct: 1905 DLIEDYKYIKTHLGSKLGNFSIMRFSGEASTFLFNTIANMLFTFLKYDLNGSESICFAGD 1964
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXX 553
D + + D L L K F + FCG+ L G + P
Sbjct: 1965 DMCANRRLTLKTEHDGFLSKLKLKAKVCFTSSPTFCGWNLSFYGIYKRPELVFERLCIAK 2024
Query: 554 DDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQV 658
++ + + +Y E + LG+ L+ V
Sbjct: 2025 ENGNFKECLDNYAIELSYAYKLGEKVLPLMDESAV 2059
>UniRef50_Q6UNJ1 Cluster: Replication-associated protein; n=6;
Potexvirus|Rep: Replication-associated protein -
Schlumbergera virus X
Length = 377
Score = 80.6 bits (190), Expect = 3e-14
Identities = 55/175 (31%), Positives = 81/175 (46%), Gaps = 6/175 (3%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
+P ++ + TP LS++A + + NDY+AFDQSQ G + E K SIP
Sbjct: 134 QPKDIMINCETTPEALSQWALENWNFNRTSYANDYTAFDQSQDGAMLQFEILKARHHSIP 193
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTV-FVSG 370
ID + +K + G L MRLTGE T+D NT+ NIA +++ I T +G
Sbjct: 194 DVYIDGYVELKCCSKTFLGVLKIMRLTGEGPTFDANTECNIAFAHTKLKIPIGTAQLYAG 253
Query: 371 DDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRN-----GLFCGYYLGPAGAIRAP 520
DD P + + +SL K + R FCG + P G ++ P
Sbjct: 254 DDCAFDFAPEEKQSFKKIETQISLQAKPTYKRQIKGEWAEFCGMIITPLGVMKDP 308
>UniRef50_A7TZR7 Cluster: Replicase; n=1; Coleus vein necrosis
virus|Rep: Replicase - Coleus vein necrosis virus
Length = 1977
Score = 80.6 bits (190), Expect = 3e-14
Identities = 58/204 (28%), Positives = 88/204 (43%), Gaps = 1/204 (0%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P N +V+ G+ +LS + K I +DY AFD SQ + E K ME L IP
Sbjct: 1730 PSNFYVHSGKGLDELSEWVKKG-KFEGICTESDYEAFDASQDQYIMAFELKVMEYLGIPK 1788
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT-TQTVFVSGD 373
LI + YIKT++ S+ G MR +GE T+ NT N+ + YD+ + + +GD
Sbjct: 1789 DLIADYVYIKTHLGSKLGNFAIMRYSGEASTFLFNTMANMLFTFLRYDVKGNEFICFAGD 1848
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXX 553
D + ++ L L K FV FCG+ L G + P+
Sbjct: 1849 DMCANTKLRKVDTHESFLSKLKLKAKVGFVNKPTFCGWNLCSDGIYKKPQLVLERLCIAK 1908
Query: 554 DDRTLPDKIASYLSEFVVGHSLGD 625
+ L I +Y E + + +
Sbjct: 1909 ETNNLTSCIDNYAIEVSYAYRMSE 1932
>UniRef50_Q4F978 Cluster: RNA-dependent RNA polymerase; n=19;
Flexiviridae|Rep: RNA-dependent RNA polymerase -
Hippeastrum latent virus
Length = 1971
Score = 80.2 bits (189), Expect = 5e-14
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Frame = +2
Query: 110 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 289
+DY AFD SQ V E M L +P L+ + YIKT++ S+ G MR +GE T
Sbjct: 1757 SDYEAFDASQDQYIVAFEVAVMNYLGLPRDLVRDYLYIKTHLGSKLGNFAIMRFSGEAST 1816
Query: 290 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 466
+ NT N+ + YDI + + +GDD S + L L K +F
Sbjct: 1817 FLFNTMANMLFTFLRYDIRGDEAICFAGDDMCASRRLRIRDEHSQFLGKLRLKAKVQFTN 1876
Query: 467 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 625
FCG+ L P G + P+ ++ L + I +Y E + +G+
Sbjct: 1877 KPTFCGWNLCPDGIYKKPQLVLERMCVAKENNNLANCIDNYAIEVAYAYRMGE 1929
>UniRef50_Q04575 Cluster: RNA replication protein (194 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=4;
Allexivirus|Rep: RNA replication protein (194 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Shallot virus X (ShVX)
Length = 1718
Score = 79.8 bits (188), Expect = 6e-14
Identities = 52/216 (24%), Positives = 93/216 (43%), Gaps = 1/216 (0%)
Frame = +2
Query: 14 RPPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIP 193
+P N+F+ +TP + F + + + +DY+ +DQSQ + E +K L +P
Sbjct: 1386 QPDNVFIMCERTPEQFNAFVMTKWDFDRPNYTSDYTQYDQSQDAAFLNFEIRKARHLGVP 1445
Query: 194 SHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQT-VFVSG 370
++ + +IKT+ + G L MRL+ E T+D NT+ NIA + + +G
Sbjct: 1446 EDVLSFYKFIKTHAKTFLGNLAIMRLSAEGPTFDANTECNIAYDALRFRLGDDVRASYAG 1505
Query: 371 DDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXX 550
DD + W L SL K FCG+ L G +++P
Sbjct: 1506 DDLVRDKACEERAGWVYSESLFSLKAKPLVTNKPDFCGWRLTRHGIVKSPIQLYQSLQLA 1565
Query: 551 XDDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQV 658
+ + SY +++ + LGD + + D++
Sbjct: 1566 LRLGKIDEVKRSYAIDYLFAYRLGDKIYDIFDEDEL 1601
>UniRef50_P37987 Cluster: RNA replication protein (ORF 1 protein)
[Includes: RNA-directed RNA polymerase (EC 2.7.7.48);
Helicase (EC 3.6.1.-)]; n=17; Chrysanthemum virus B|Rep:
RNA replication protein (ORF 1 protein) [Includes:
RNA-directed RNA polymerase (EC 2.7.7.48); Helicase (EC
3.6.1.-)] - Chrysanthemum virus B (CVB)
Length = 260
Score = 79.8 bits (188), Expect = 6e-14
Identities = 55/206 (26%), Positives = 93/206 (45%), Gaps = 3/206 (1%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVC--NDYSAFDQSQHGEAVVLERKKMERLSI 190
P +++ G+ +L+ + +K +C +DY AFD SQ V E ME L +
Sbjct: 15 PSRFYIHSGKGLEELNEWV---IKGKFEGICTESDYEAFDASQDQYIVAFELALMEYLGL 71
Query: 191 PSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDI-TTQTVFVS 367
P LI+ + +IK ++ S+ G MR +GE T+ NT N+ + Y+I ++ + +
Sbjct: 72 PRDLIEDYAFIKCHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYNIKDSEHICFA 131
Query: 368 GDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXX 547
GDD S + + L L K FV FCG++L P G + P+
Sbjct: 132 GDDMCASERLCIKKEHEGFLNKLKLKAKVFFVDKPTFCGWHLCPDGIYKKPQLVLERMCI 191
Query: 548 XXDDRTLPDKIASYLSEFVVGHSLGD 625
+ L + + +Y E + LG+
Sbjct: 192 AKEKNNLANCLDNYAIEVSYAYKLGE 217
>UniRef50_O91901 Cluster: Replicase; n=76; Rupestris stem
pitting-associated virus|Rep: Replicase - Rupestris stem
pitting associated virus-1
Length = 2161
Score = 79.4 bits (187), Expect = 8e-14
Identities = 54/214 (25%), Positives = 101/214 (47%), Gaps = 1/214 (0%)
Frame = +2
Query: 20 PNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSH 199
PN +++ G+ +L+ + + I +DY AFD SQ + E + M+ L +P
Sbjct: 1920 PNFYIHSGKGLDELNEWVRTR-GFTGICTESDYEAFDASQDHFILAFELQIMKFLGLPED 1978
Query: 200 LIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT-TQTVFVSGDD 376
LI + +IK ++ S+ G + MR TGE T+ NT N+ + Y++T ++++ +GDD
Sbjct: 1979 LILDYEFIKIHLGSKLGSFSIMRFTGEASTFLFNTMANMLFTFLRYELTGSESIAFAGDD 2038
Query: 377 SLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXD 556
+ + + ++ L K +FV N FCG+ L G + P+ +
Sbjct: 2039 MCANRRLRLKTEHEGFLNMICLKAKVQFVSNPTFCGWCLFKEGIFKKPQLIWERICIARE 2098
Query: 557 DRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQV 658
L + I +Y E + LG+ ++ ++V
Sbjct: 2099 MGNLENCIDNYAIEVSYAYRLGELAIEMMTEEEV 2132
>UniRef50_Q6PLS1 Cluster: Genome polyprotein (241 kDa polyprotein)
(ORF1 polyprotein) [Contains: Putative RNA-directed RNA
polymerase/helicase (EC 2.7.7.48) (EC 3.6.1.-); Coat
protein]; n=18; Apple stem grooving virus|Rep: Genome
polyprotein (241 kDa polyprotein) (ORF1 polyprotein)
[Contains: Putative RNA-directed RNA polymerase/helicase
(EC 2.7.7.48) (EC 3.6.1.-); Coat protein] - Apple stem
grooving virus (strain Korea) (ASGV)
Length = 2105
Score = 79.0 bits (186), Expect = 1e-13
Identities = 56/227 (24%), Positives = 102/227 (44%), Gaps = 5/227 (2%)
Frame = +2
Query: 29 FVYGGQTPYDLSRFASSHLKPLQ-IHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHLI 205
+++ G+ + L F + + + + +DY+AFD SQ + E ++ L +
Sbjct: 1335 YIHSGKNFFCLDSFVTKNAEVFDGFSIESDYTAFDSSQDHVILAFEMALLQYLGVSKEFQ 1394
Query: 206 DLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQT--VFVSGDD- 376
+ +K + + G L MR TGE T+ NT N+ +Y I + + +GDD
Sbjct: 1395 LDYLRLKLTLGCRLGSLAIMRFTGEFCTFLFNTFANMLFTQLKYKIDPRKHRILFAGDDM 1454
Query: 377 -SLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXX 553
SL S + SLT +E + +FCG+YL P G I++P+
Sbjct: 1455 CSLSSLKRRRGERATRLMKSFSLTAVEEVRKFPMFCGWYLSPYGIIKSPKLLWARIKMMS 1514
Query: 554 DDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCR 694
+ + L + + +YL E + + LG+ +T+L + Y + FF +
Sbjct: 1515 ERQLLKECVDNYLFEAIFAYRLGERLYTILKEEDFEYHYLVIRFFVK 1561
>UniRef50_Q0VZD1 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
common latent virus|Rep: RNA-dependent RNA polymerase -
Narcissus common latent virus
Length = 1966
Score = 78.6 bits (185), Expect = 1e-13
Identities = 53/204 (25%), Positives = 90/204 (44%), Gaps = 1/204 (0%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P N +++ G+ +L+ + K + +DY AFD SQ + E + M L +P
Sbjct: 1722 PRNFYIHSGKGLDELNAWVRRG-KFDGVCTESDYEAFDASQDEYIMAFELELMNFLGLPH 1780
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT-TQTVFVSGD 373
LI+ + YIKT++ S+ G MR +GE T+ NT N+ + Y++ + + +GD
Sbjct: 1781 DLIEDYKYIKTSLGSKLGNFAIMRFSGEASTFLFNTLANMLFTFLRYEVKGHEFICFAGD 1840
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXX 553
D S + L K +F FCG++L P G + P+
Sbjct: 1841 DMCASAHLRKTEKYSKFLDKFKLKAKVQFTAKPTFCGWHLSPDGIYKKPQLVFERMCIAM 1900
Query: 554 DDRTLPDKIASYLSEFVVGHSLGD 625
+ L + I +Y E + LG+
Sbjct: 1901 ELNNLSNCIDNYAIEVTFAYKLGE 1924
>UniRef50_Q52V15 Cluster: Replicase; n=17; Flexiviridae|Rep:
Replicase - Mint virus 2
Length = 500
Score = 77.8 bits (183), Expect = 2e-13
Identities = 55/202 (27%), Positives = 91/202 (45%), Gaps = 1/202 (0%)
Frame = +2
Query: 23 NLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPSHL 202
N+ +Y + DL ++ ++ + I +DY AFD+SQ + + E + ++ P L
Sbjct: 236 NVMIYSQKNYTDLDNWSRLYVDGM-IGTDSDYEAFDRSQDEKILSFEVEVLKFFLWPEEL 294
Query: 203 IDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQT-VFVSGDDS 379
I+ + +K + G L MR +GE GT+ NT N+ Y IT T + +GDD
Sbjct: 295 INEYVTLKLMMGCSMGDLAIMRFSGEFGTFFFNTICNMVFTCMRYCITKDTPICYAGDDM 354
Query: 380 LVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDD 559
D++ V L L K + + LFCG+ + P G ++ P D
Sbjct: 355 YAPGVLQVKSDYEHVLKELQLKAKVQVSTSPLFCGWRMTPYGIVKDPNLLLDRWKMAKRD 414
Query: 560 RTLPDKIASYLSEFVVGHSLGD 625
L + +Y E V G+ LG+
Sbjct: 415 GKLDLCMINYALEAVYGYRLGE 436
>UniRef50_P17965 Cluster: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=10;
Carlavirus|Rep: RNA replication protein (147 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Potato virus M
(strain Russian) (PVM)
Length = 1968
Score = 77.8 bits (183), Expect = 2e-13
Identities = 57/207 (27%), Positives = 95/207 (45%), Gaps = 4/207 (1%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P N +++ G+ +L + K +I +DY AFD SQ + E + M+ L +PS
Sbjct: 1724 PKNYYIHSGKGLEELDAWVKKG-KFDRICTESDYEAFDASQDEFIMAFELELMKYLRLPS 1782
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT-TQTVFVSGD 373
LI+ + +IKT++ S+ G MR +GE T+ NT N+ + Y+I + + +GD
Sbjct: 1783 DLIEDYKFIKTSLGSKLGNFAIMRFSGEASTFLFNTLANMLFTFMRYNIRGDEFICFAGD 1842
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR---NGLFCGYYLGPAGAIRAPRXXXXXXX 544
D S + L L K +FV+ FCG++L P G + P+
Sbjct: 1843 DMCASRRLQPTKKFAHFLDKLKLKAKVQFVQFVNKPTFCGWHLCPDGIYKKPQLVLERMC 1902
Query: 545 XXXDDRTLPDKIASYLSEFVVGHSLGD 625
+ L + I +Y E + LG+
Sbjct: 1903 IAKEMNNLSNCIDNYAIEVAYAYKLGE 1929
>UniRef50_A0AAQ6 Cluster: RNA-dependent RNA polymerase; n=1; Narcissus
symptomless virus|Rep: RNA-dependent RNA polymerase -
Narcissus symptomless virus
Length = 1871
Score = 77.4 bits (182), Expect = 3e-13
Identities = 52/215 (24%), Positives = 96/215 (44%), Gaps = 1/215 (0%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P +++ G+ DL+ + ++ + +DY AFD SQ + E M+ L +P
Sbjct: 1630 PAKYYIHSGKNIDDLNDWVKAN-NFSGVCTESDYEAFDASQDHYIMAFEVAVMKYLGLPR 1688
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT-TQTVFVSGD 373
L++ + +IKT++ S+ G MR +GE T+ NT N+ + +Y+IT +++ +GD
Sbjct: 1689 DLVNDYIFIKTHLGSKLGSFAIMRFSGEASTFLFNTMSNMLFTFMKYEITGKESICFAGD 1748
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXX 553
D S + L L K F FCG+ L G + P+
Sbjct: 1749 DMCASKRLRLSTVHSSYLEKLRLKAKVCFTSRPTFCGWSLNRLGIFKKPQLVYGRMCIAI 1808
Query: 554 DDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQV 658
+ L + I +Y E + +G+ L+ +++
Sbjct: 1809 EKNNLQNCIDNYAIEVSYAYLMGENALVLMDEEEI 1843
>UniRef50_Q5GR23 Cluster: Replicase; n=1; Daphne virus S|Rep:
Replicase - Daphne virus S
Length = 2004
Score = 77.0 bits (181), Expect = 4e-13
Identities = 55/204 (26%), Positives = 88/204 (43%), Gaps = 1/204 (0%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P +++ G+ +L+ + H + +DY AFD SQ V E ME L +P
Sbjct: 1762 PDRFYIHSGKGLEELNDWVLKH-DFSGVCTESDYEAFDASQDQYIVGFELAVMEYLGLPR 1820
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDI-TTQTVFVSGD 373
LI+ + YIKT++ S+ G MR +GE T+ NT N+ + Y+I + + +GD
Sbjct: 1821 DLINDYIYIKTHLGSKLGSFAIMRFSGEASTFLFNTMANMLFTFLRYEIHGNENICFAGD 1880
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXX 553
D S L L K +F + FCG+ L G + P+
Sbjct: 1881 DMCASKRLQVKNIHAKFLSKLKLKAKVDFTSHPTFCGWNLTKYGIYKKPQLVLERLCIAK 1940
Query: 554 DDRTLPDKIASYLSEFVVGHSLGD 625
+ L + I +Y E + LG+
Sbjct: 1941 ETNNLINCIDNYAIEVSYAYKLGE 1964
>UniRef50_P54891 Cluster: RNA-directed RNA polymerase; n=61;
Trichovirus|Rep: RNA-directed RNA polymerase - Apple
chlorotic leaf spot virus (isolate apple) (ACLSV)
Length = 1885
Score = 74.9 bits (176), Expect = 2e-12
Identities = 57/227 (25%), Positives = 96/227 (42%), Gaps = 1/227 (0%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P N +++ + +L FA + V +DY+AFD SQ + E + ++
Sbjct: 1609 PDNYYIHQRKNFSELEDFAKRFSNG-SMCVESDYTAFDVSQDHTILAFEVELLKHFGWDD 1667
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQT-VFVSGD 373
++ + +K + + G MR TGE T+ NT N+ + Y++ T + +GD
Sbjct: 1668 KVLQSYIKMKCTLGCRLGGFAIMRFTGEFSTFLFNTLANMVFTFCRYEVPDGTPICFAGD 1727
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXX 553
D + + LSL K + +FCG+ L G I+ P
Sbjct: 1728 DMCALRNLREIDTHECILSKLSLKAKVNRTKVPMFCGWRLCFDGLIKEPCLIYERLQVAI 1787
Query: 554 DDRTLPDKIASYLSEFVVGHSLGDPFWTLLPADQVIYQSALFDFFCR 694
++ L D I SY EF + LG+ ++ L +Q+ Y L FF R
Sbjct: 1788 ENGRLMDVIDSYFLEFSFAYKLGERLYSHLEIEQLNYHQVLTRFFIR 1834
>UniRef50_A4ZWC5 Cluster: Replicase; n=2; Carlavirus|Rep: Replicase -
Phlox virus S
Length = 1990
Score = 74.5 bits (175), Expect = 2e-12
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Frame = +2
Query: 110 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 289
+DY AFD SQ V E ME L +P LI+ + +IKT++ S+ G MR +GE T
Sbjct: 1776 SDYEAFDASQDQYMVAFEVAVMEYLGLPRDLIEDYKFIKTHLGSKLGNFAIMRFSGEAST 1835
Query: 290 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 466
+ NT N+ + +Y+I + + +GDD S L L K V
Sbjct: 1836 FLFNTMANMLFTFLKYEIKGHEFICFAGDDMCASERLATKHKHVGFLSKLKLKAKVFMVS 1895
Query: 467 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 625
FCG+ L P G + P+ + L + I +Y E + LG+
Sbjct: 1896 KPTFCGWNLCPDGIYKKPQLVMERMCIAKEKANLANCIDNYAIEVSYAYKLGE 1948
>UniRef50_Q91BP7 Cluster: RNA polymerase; n=3; Flexiviridae|Rep: RNA
polymerase - Sugarcane striate mosaic associated virus
Length = 1937
Score = 71.3 bits (167), Expect = 2e-11
Identities = 46/172 (26%), Positives = 78/172 (45%), Gaps = 1/172 (0%)
Frame = +2
Query: 110 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 289
+DY AFD SQ + E M+ L +P+ LI+ + YIK ++ S+ G MR TGE T
Sbjct: 1721 SDYEAFDASQDHYILAFELALMKYLGLPNELIEDYKYIKIHLGSKLGDFAIMRFTGEAST 1780
Query: 290 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 466
+ NT N+ + YDI +++ +GDD + ++ +L K +
Sbjct: 1781 FLFNTMANMLFTFLVYDIKGNESICFAGDDMYANTSLKTCSKNKSLLKKFTLKAKVQVTE 1840
Query: 467 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLG 622
+ FCG++L G + P + L + + SY E +++G
Sbjct: 1841 SPTFCGWHLTEDGIYKDPILVSFRFMIALEKGILHECLESYSIECSYAYNMG 1892
>UniRef50_P22657 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=20;
Carlavirus|Rep: RNA replication protein (152 kDa
protein) (ORF 1 protein) [Includes: RNA-directed RNA
polymerase (EC 2.7.7.48); Helicase (EC 3.6.1.-)] -
Potato virus S (strain Peruvian)
Length = 353
Score = 71.3 bits (167), Expect = 2e-11
Identities = 51/204 (25%), Positives = 87/204 (42%), Gaps = 1/204 (0%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P +++ G+ +L+++ K + +DY AFD SQ V E M L +P+
Sbjct: 112 PATFYIHSGKGLEELNKWVIES-KFEGVCTESDYEAFDASQDQYIVAFELALMRYLGLPN 170
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT-TQTVFVSGD 373
LI+ + YIKT++ S+ G MR +GE T+ NT N+ + Y + + + +GD
Sbjct: 171 DLIEDYKYIKTHLGSKLGNFAIMRFSGEASTFLFNTMANMLFTFLRYKLKGDERICFAGD 230
Query: 374 DSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXX 553
D + + L L K + FCG+ L G + P+
Sbjct: 231 DMCANRALFIKDTHEGFLKKLKLKAKVDRTNRPSFCGWSLSSDGIYKKPQLVFERLCIAK 290
Query: 554 DDRTLPDKIASYLSEFVVGHSLGD 625
+ L + I +Y E + LG+
Sbjct: 291 ETANLANCIDNYAIEVSYAYKLGE 314
>UniRef50_Q8B3K7 Cluster: RNA-dependent RNA polymerase; n=7; Grapevine
virus A|Rep: RNA-dependent RNA polymerase - Grapevine
virus A
Length = 1707
Score = 70.5 bits (165), Expect = 4e-11
Identities = 51/204 (25%), Positives = 86/204 (42%), Gaps = 1/204 (0%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
P N+ +Y + DL ++A + ++ + + +DY AFD+SQ + + LE + + P
Sbjct: 1444 PENVMIYSQKNYMDLDKWAKTWVESM-MGTDSDYEAFDRSQDEKVLDLEVEVLRFFLWPE 1502
Query: 197 HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITTQTVFVSGDD 376
LI + +K + G L MR +GE GT+ NT N+ Y + T D
Sbjct: 1503 DLIREYEELKLMMGCALGDLAVMRFSGEFGTFFFNTICNMVFSCMRYHMDRNTPICFAGD 1562
Query: 377 SLVSPP-PPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXX 553
+ SP D++ L+L K LFCG+ + P G ++ P
Sbjct: 1563 DMYSPGILRTKNDYEGTLDQLTLKAKVHISEEPLFCGWRMSPFGIVKEPNLILDRWKIAK 1622
Query: 554 DDRTLPDKIASYLSEFVVGHSLGD 625
L + +Y E G+ L +
Sbjct: 1623 RSGNLSLCLVNYAIEASFGYRLSE 1646
>UniRef50_Q67654 Cluster: Replicase; n=5; Carlavirus|Rep: Replicase -
Garlic latent virus
Length = 1924
Score = 70.1 bits (164), Expect = 5e-11
Identities = 48/173 (27%), Positives = 76/173 (43%), Gaps = 1/173 (0%)
Frame = +2
Query: 110 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 289
+DY AFD SQ + E ME L +P LI+ + YIKT++ + G L MR +GE T
Sbjct: 1710 SDYEAFDASQDQYIMAFEIALMEFLGLPRSLINDYKYIKTHLGCKMGALAIMRFSGEAST 1769
Query: 290 YDDNTDYNIAVIYSEYDIT-TQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 466
+ NT N+ + YD+ +++ +GDD + + L L K F +
Sbjct: 1770 FLFNTLANMLFTFLRYDLNGHESICFAGDDMCANRRLRVSLKHEDFLGKLKLKAKVAFTK 1829
Query: 467 NGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKIASYLSEFVVGHSLGD 625
FCG+ L G + P+ + L + I +Y E + G+
Sbjct: 1830 RPTFCGWNLTFFGIYKKPQLVFERMCIAKETNNLHNCIDNYAIEISFAYVKGE 1882
>UniRef50_P22168 Cluster: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)]; n=5;
Potexvirus|Rep: RNA replication protein (152 kDa protein)
(ORF 1 protein) [Includes: RNA-directed RNA polymerase
(EC 2.7.7.48); Helicase (EC 3.6.1.-)] - Foxtail mosaic
virus
Length = 1335
Score = 69.3 bits (162), Expect = 9e-11
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 11/194 (5%)
Frame = +2
Query: 110 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGT 289
ND++A+DQSQ G + E K IP +++ + +K N G L MRLTGE T
Sbjct: 1107 NDFTAYDQSQDGAMLQFEVLKALHHDIPHEVVEAYVALKLNSKMFLGTLAIMRLTGEGPT 1166
Query: 290 YDDNTDYNIAVIYSEYDITTQTV-FVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 466
+D NT+ NIA ++ ++I +GDD ++ P + + +L K +
Sbjct: 1167 FDANTECNIAYTHARFEIPKNVAQMYAGDDCALNCRPVERQSFLPLVEKFTLKSKPKVFE 1226
Query: 467 NGL-----FCGYYLGPAGAIRAPR-----XXXXXXXXXXDDRTLPDKIASYLSEFVVGHS 616
+ FCG + P G ++ P + +L D +Y + + +
Sbjct: 1227 QKVGSWPEFCGNLITPRGYLKDPMKLQHCLQLAQRKKPSEPGSLKDVAENYAMDLLPTYE 1286
Query: 617 LGDPFWTLLPADQV 658
LGD + + Q+
Sbjct: 1287 LGDALYEIFDERQM 1300
>UniRef50_Q1WAJ5 Cluster: 27 kDa protein; n=1; White ash mosaic
virus|Rep: 27 kDa protein - White ash mosaic virus
Length = 243
Score = 60.1 bits (139), Expect = 5e-08
Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 1/146 (0%)
Frame = +2
Query: 224 KTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDITT-QTVFVSGDDSLVSPPPP 400
K N + G L MRLTGE T+D NT+ NIA + +T + +GDD
Sbjct: 34 KCNARTFAGKLAIMRLTGEGPTFDANTECNIAYDALRFKLTKGKKACYAGDDLAREECAE 93
Query: 401 AHPDWDAVSPLLSLTFKKEFVRNGLFCGYYLGPAGAIRAPRXXXXXXXXXXDDRTLPDKI 580
W ++P LT K FCG+ + G ++ PR + I
Sbjct: 94 ERSSWAYLNPSFKLTAKPIETTRPDFCGWRITKEGIVKQPRQLYQSLVLGFLRGNIASMI 153
Query: 581 ASYLSEFVVGHSLGDPFWTLLPADQV 658
SY +F + +GD + + D +
Sbjct: 154 PSYKIDFTYAYKMGDKLFEIFDEDDL 179
>UniRef50_Q04610 Cluster: Non-structural polyprotein; n=538; root|Rep:
Non-structural polyprotein - Hepatitis E virus (strain
Myanmar) (HEV)
Length = 1693
Score = 51.2 bits (117), Expect = 2e-05
Identities = 47/142 (33%), Positives = 66/142 (46%), Gaps = 8/142 (5%)
Frame = +2
Query: 110 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMR-----LT 274
ND+S FD +Q+ ++ LE ME +P LI L+ I++ Q P +R +
Sbjct: 1459 NDFSEFDSTQNNFSLGLECAIMEECGMPQWLIRLYHLIRSAWILQ-APKESLRGFWKKHS 1517
Query: 275 GEPGTYDDNTDYNIAVIYSEYDITT-QTVFVSGDDSLV-SPPPPAHPDWDAVSPLLSLTF 448
GEPGT NT +N+AVI YD Q GDDS+V P + L
Sbjct: 1518 GEPGTLLWNTVWNMAVITHCYDFRDFQVAAFKGDDSIVLCSEYRQSPGAAVLIAGCGLKL 1577
Query: 449 KKEFVRNGLFCGYYLGPA-GAI 511
K +F GL+ G + P GA+
Sbjct: 1578 KVDFRPIGLYAGVVVAPGLGAL 1599
>UniRef50_Q0WYB5 Cluster: Nonstructural protein; n=141; Hepatitis E
virus|Rep: Nonstructural protein - Hepatitis E virus
Length = 1717
Score = 48.4 bits (110), Expect = 2e-04
Identities = 42/129 (32%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Frame = +2
Query: 17 PPNLFVYGGQTPYDLSRFASSHLKPLQIHVCNDYSAFDQSQHGEAVVLERKKMERLSIPS 196
PPN+F YG + A S + ND+S FD +Q+ ++ LE ME +P
Sbjct: 1454 PPNIF-YGDAFEESVFSAAISGAGSSMVFE-NDFSEFDSTQNNFSLGLECVIMEECGMPQ 1511
Query: 197 HLIDLHCYIKTNITSQFGPLTCM-----RLTGEPGTYDDNTDYNIAVIYSEYDITTQTVF 361
LI L+ +++ T Q P + + +GEPGT NT +N+A+I Y+ V
Sbjct: 1512 WLIRLYHLVRSAWTLQ-APKESLKGFWKKHSGEPGTLLWNTVWNMAIIAHCYEFRDLRVA 1570
Query: 362 V-SGDDSLV 385
GDDS+V
Sbjct: 1571 AFKGDDSVV 1579
>UniRef50_Q6QLN1 Cluster: Non-structural polyprotein; n=40; root|Rep:
Non-structural polyprotein - Avian hepatitis E virus
Length = 1531
Score = 47.6 bits (108), Expect = 3e-04
Identities = 29/97 (29%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Frame = +2
Query: 110 NDYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTN---ITSQFGPLTCMRL-TG 277
ND+S FD +Q+ ++ LE + M R +P ++ L+ +++ + + C + +G
Sbjct: 1300 NDFSEFDSTQNNVSLDLECELMRRFGMPDWMVALYHLVRSYWLLVAPKEALRGCWKKHSG 1359
Query: 278 EPGTYDDNTDYNIAVIYSEYDITTQTVF-VSGDDSLV 385
EPGT NT +N+ V++ Y+ +V GDDS+V
Sbjct: 1360 EPGTLLWNTVWNMTVLHHVYEFDRPSVLCFKGDDSVV 1396
>UniRef50_Q5VI74 Cluster: RNA-dependent RNA polymerase; n=1;
Fragaria chiloensis latent virus|Rep: RNA-dependent RNA
polymerase - Fragaria chiloensis latent virus
Length = 786
Score = 46.8 bits (106), Expect = 5e-04
Identities = 39/136 (28%), Positives = 64/136 (47%), Gaps = 9/136 (6%)
Frame = +2
Query: 113 DYSAFDQSQHGEAVVLERKKMERLSIPSHLID--LHCYIKTNITSQFG---PLTCMRLTG 277
D+S FD+SQ +++K RL +P D +++++I+ G + R TG
Sbjct: 539 DFSKFDKSQQELHHEVQKKIFLRLGLPRDFCDTWFTSHVRSHISDPSGLRFSVNFQRRTG 598
Query: 278 EPGTYDDNTDYNIAVIYSEYDITTQTVFV---SGDDSLVSPPPPAHPDWDAVSPLLSLTF 448
+ TY NT +AV+ YD++ V + SGDDSL+ P + + L F
Sbjct: 599 DAVTYLGNTVVTLAVLSYVYDLSDPNVLMVVASGDDSLIGSYRPLDRSREHLCSTL-FNF 657
Query: 449 KKEFVRNGLF-CGYYL 493
+ +F N F C +L
Sbjct: 658 EAKFPHNQPFICSKFL 673
>UniRef50_Q91NQ3 Cluster: Polymerase P2; n=2; Prune dwarf virus|Rep:
Polymerase P2 - Prune dwarf virus
Length = 788
Score = 42.3 bits (95), Expect = 0.011
Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Frame = +2
Query: 113 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDL----HCYIKTNITSQFG---PLTCMRL 271
D+S FD+SQ ++RK RL +P ++ HC +++I+ G + R
Sbjct: 510 DFSKFDKSQQELHHEIQRKIFLRLGVPQEFVNTWFTSHC--RSHISDASGLRFSVNYQRR 567
Query: 272 TGEPGTYDDNTDYNIAVIYSEYDITTQT---VFVSGDDSLVSPPPPAHPDWDAVSPLLSL 442
G+ TY NT +A + YD+ + V SGDDSL+ ++ + L
Sbjct: 568 AGDACTYLGNTIVTLAALCYVYDLRSSNVAMVVASGDDSLIGSYSELDRSFEHLFSTL-F 626
Query: 443 TFKKEFVRNGLF-CGYYL 493
F+ +F N F C +L
Sbjct: 627 NFEAKFPHNQPFICSKFL 644
>UniRef50_Q8JJW9 Cluster: Polyprotein; n=4; Sweet potato chlorotic
stunt virus|Rep: Polyprotein - Sweet potato chlorotic
stunt virus
Length = 2492
Score = 42.3 bits (95), Expect = 0.011
Identities = 43/166 (25%), Positives = 72/166 (43%), Gaps = 12/166 (7%)
Frame = +2
Query: 32 VYGGQTPYDLSRFASSHLK-PLQIHVCN--DYSAFDQSQHG-----EAVVLERKKM-ERL 184
+Y G LSR S L PL + D+S FD+SQ E ++ K E
Sbjct: 2228 MYSGMNLETLSRVVKSKLPLPLDSYYTLEIDFSKFDKSQGCVFKLYEGMIYRFLKFSEEA 2287
Query: 185 SIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDI-TTQTVF 361
+ + C K+ + G L R TG P T+ NT + ++ + YD+ +
Sbjct: 2288 YLNIETTEYFCRFKS-ASGLTGELGAQRRTGSPNTWLSNTLVTMGMLLNVYDLDDIDLML 2346
Query: 362 VSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGL--FCGYYL 493
VSGDDSL+ + ++ ++ F+ +F+ N + FC ++
Sbjct: 2347 VSGDDSLIFSKKQLENKTNELN--INFGFEAKFIENSVPYFCSKFI 2390
>UniRef50_P03593 Cluster: RNA-directed RNA polymerase 2A; n=1;
Alfalfa mosaic virus (strain 425 / isolate Leiden)|Rep:
RNA-directed RNA polymerase 2A - Alfalfa mosaic virus
(strain 425 / isolate Leiden)
Length = 790
Score = 41.5 bits (93), Expect = 0.020
Identities = 30/100 (30%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Frame = +2
Query: 113 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDL--HCYIKTNITSQ----FGPLTCMRLT 274
D+S FD+SQ+ +++ + ++ L IP+ + L + + K+ I+ F + R T
Sbjct: 530 DFSKFDKSQNELHHLIQERFLKYLGIPNEFLTLWFNAHRKSRISDSKNGVFFNVDFQRRT 589
Query: 275 GEPGTYDDNTDYNIAVIYSEYDI---TTQTVFVSGDDSLV 385
G+ TY NT +A + YD+ + V SGDDSL+
Sbjct: 590 GDALTYLGNTIVTLACLCHVYDLMDPNVKFVVASGDDSLI 629
>UniRef50_Q6JE41 Cluster: P2 protein; n=1; Humulus japonicus latent
virus|Rep: P2 protein - Humulus japonicus latent virus
Length = 853
Score = 39.5 bits (88), Expect = 0.079
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Frame = +2
Query: 113 DYSAFDQSQHGEAVVLERKKMERLSIPSHLID------LHCYIKTNITSQFGPLTCMRLT 274
D+S FD+SQ L+R+ R+ +P + ID +I F + R T
Sbjct: 589 DFSKFDKSQGELHHYLQREIFIRIGVPMNFIDAWVPQVTRSFISDPSNGLFFNVDFQRRT 648
Query: 275 GEPGTYDDNTDYNIAVIYSEYDI---TTQTVFVSGDDSLV 385
G+ TY NT + V+ YD+ +V SGDD L+
Sbjct: 649 GDACTYLGNTLVTLCVLCHVYDLGDANVLSVVASGDDCLI 688
>UniRef50_A5JM40 Cluster: Polyprotein; n=9; Crinivirus|Rep:
Polyprotein - Cucumber yellow stunting disorder virus
Length = 2483
Score = 39.5 bits (88), Expect = 0.079
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 3/85 (3%)
Frame = +2
Query: 248 GPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDI-TTQTVFVSGDDSLVSPPPPAHPDWDAV 424
G L R TG P T+ NT + ++ S+Y++ + VSGDDSL+ P P+ A
Sbjct: 2299 GELGAQRRTGSPNTWLSNTLVTMGILLSQYNLDDIDLMLVSGDDSLIFSKKPL-PNVTA- 2356
Query: 425 SPLLSLTFKKEFVRNGL--FCGYYL 493
F+ +F+ N + FC Y+
Sbjct: 2357 EINKDFGFEAKFLMNSVPYFCSKYI 2381
>UniRef50_Q6RK13 Cluster: P2 protein; n=6; Ilarvirus subgroup 1|Rep:
P2 protein - Parietaria mottle virus
Length = 805
Score = 39.1 bits (87), Expect = 0.10
Identities = 39/137 (28%), Positives = 65/137 (47%), Gaps = 10/137 (7%)
Frame = +2
Query: 113 DYSAFDQSQHGEAVVLERKKMERLSIPSHLID--LHCYIKTNITSQ---FG-PLTCMRLT 274
D+S FD+SQ ++ + L IP H +D + + +++I + G + R T
Sbjct: 471 DFSKFDKSQGRLHHDVQLRLFLHLGIPQHFVDTWFNAHERSHIRDRDCGIGFSVDYQRRT 530
Query: 275 GEPGTYDDNTDYNIAVIYSEYDITTQTV-FV--SGDDSLVSPPPPAHPDWDAVSPLLSLT 445
G+ TY NT ++V+ YD++ + FV SGDDSL+ P D + + L
Sbjct: 531 GDACTYLGNTLVTLSVLSYVYDLSKPDILFVAASGDDSLIGSLNPLPRDKEDLCVSL-FN 589
Query: 446 FKKEFVRNGLF-CGYYL 493
+ +F N F C +L
Sbjct: 590 LETKFPHNQPFLCSKFL 606
>UniRef50_Q6VRA8 Cluster: ORF 1a/1b fusion polyprotein; n=14;
Crinivirus|Rep: ORF 1a/1b fusion polyprotein - Beet
pseudo-yellows virus
Length = 2441
Score = 37.9 bits (84), Expect = 0.24
Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 10/131 (7%)
Frame = +2
Query: 23 NLFVYGGQTPYDLSRFASSHLK-PLQIH--VCNDYSAFDQSQ------HGEAVVLERKKM 175
N+ +Y G L S+ L+ P+ + + D+S FD+ Q + E V +
Sbjct: 2174 NIVLYSGMNLDTLGELISAKLQYPISEYNTIEIDFSKFDKPQGVVFKLYEEIVYKFFRFS 2233
Query: 176 ERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDI-TTQ 352
E + L + C K+ + L R TG P T+ NT + ++ S YD+
Sbjct: 2234 EDIYENIKLTEYFCKAKSR-SGVSVELGAQRRTGSPNTWLSNTLVTLGIVLSTYDLRDID 2292
Query: 353 TVFVSGDDSLV 385
+ VSGDDSL+
Sbjct: 2293 LLLVSGDDSLI 2303
>UniRef50_Q6JGW4 Cluster: ORF 1a/1b fusion polyprotein; n=7;
Strawberry pallidosis associated virus|Rep: ORF 1a/1b
fusion polyprotein - Strawberry pallidosis associated
virus
Length = 2451
Score = 37.9 bits (84), Expect = 0.24
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 10/128 (7%)
Frame = +2
Query: 32 VYGGQTPYDLSRFASSHLK-PLQIHVCN--DYSAFDQSQHG-----EAVVLERKKMERLS 187
+Y G L + S L P+Q + D+S FD+SQ E ++ + K + +
Sbjct: 2187 LYSGMNLETLGKLIRSKLDFPIQEYRTTEIDFSKFDKSQGVIFKLYEEIIYKFFKFDSKT 2246
Query: 188 IPS-HLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDI-TTQTVF 361
+ + C K++ L R TG P T+ NT +A+I + YD+ +
Sbjct: 2247 YEAIKFSEYFCRAKSSCGISV-ELGAQRRTGSPNTWLSNTLVTLAMILTHYDLDDIDLLL 2305
Query: 362 VSGDDSLV 385
VSGDDSL+
Sbjct: 2306 VSGDDSLI 2313
>UniRef50_Q7T737 Cluster: RNA-dependent RNA polymerase; n=11;
root|Rep: RNA-dependent RNA polymerase - Little cherry
virus 2
Length = 515
Score = 37.5 bits (83), Expect = 0.32
Identities = 37/135 (27%), Positives = 57/135 (42%), Gaps = 8/135 (5%)
Frame = +2
Query: 113 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDL-HCYIKTNITSQFGP-----LTCMRLT 274
D S FD+SQ +E + RL + +++ + ++ S F + R T
Sbjct: 280 DISKFDKSQGPLIKQIEEMVLRRLGVDEEVLNWWYSSEYESVCSTFDKSLTVSVDAQRRT 339
Query: 275 GEPGTYDDNTDYNIAVI--YSEYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTF 448
G T+ NT N+ ++ +D T F SGDDSLV P + D+ +S L
Sbjct: 340 GGSNTWLGNTIVNMVLLAYVKNFDPNTFVCF-SGDDSLVLSRDPIYFDFFKLSLELGFDV 398
Query: 449 KKEFVRNGLFCGYYL 493
K V FC Y+
Sbjct: 399 KFTPVATPYFCSKYI 413
>UniRef50_Q9Q703 Cluster: P348; n=7; Beet yellows virus|Rep: P348 -
Beet yellows virus (BYV) (Sugar beet yellows virus)
Length = 3090
Score = 36.7 bits (81), Expect = 0.56
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 9/140 (6%)
Frame = +2
Query: 113 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCY--IKTNITSQFGPLTC----MRLT 274
D+S FD+SQ ER L+D+ +N T+ G L+ R +
Sbjct: 2823 DFSKFDKSQDAFIKSFERTLYSAFGFDEDLLDVWMQGEYTSNATTLDGQLSFSVDNQRKS 2882
Query: 275 GEPGTYDDNTDYNIAVIYSEYDITT-QTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFK 451
G T+ N+ + ++ Y + +FVSGDDSL+ P DA+ L F+
Sbjct: 2883 GASNTWIGNSIVTLGILSMFYYTNRFKALFVSGDDSLIFSESPIRNSADAM--CTELGFE 2940
Query: 452 KEFVRNGL--FCGYYLGPAG 505
+F+ + FC + G
Sbjct: 2941 TKFLTPSVPYFCSKFFVMTG 2960
>UniRef50_Q9DUT2 Cluster: Putative 2a protein; n=1; Pelargonium
zonate spot virus|Rep: Putative 2a protein - Pelargonium
zonate spot virus
Length = 687
Score = 36.7 bits (81), Expect = 0.56
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 7/103 (6%)
Frame = +2
Query: 113 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHC--YIKTNITSQFGPLT--C--MRLT 274
D S FD+SQ + +RK + ++ +P+HL + C + K+ I+ ++ C R T
Sbjct: 433 DLSKFDKSQGLLHLEFQRKILCKIGLPAHLANWWCDFHYKSFISDPRAKVSFNCSFQRRT 492
Query: 275 GEPGTYDDNTDYNIAVIYSEYDITT-QTVFVSGDDSLVSPPPP 400
G+ T+ NT +A+ YD + + +GDDSL P
Sbjct: 493 GDAFTFFGNTLVTMAMFSFCYDTRQFEKMLFAGDDSLAISSSP 535
>UniRef50_Q83045 Cluster: RNA-dependent RNA polymerase; n=7;
Crinivirus|Rep: RNA-dependent RNA polymerase - Lettuce
infectious yellows virus
Length = 476
Score = 36.7 bits (81), Expect = 0.56
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 12/132 (9%)
Frame = +2
Query: 26 LFVYGGQTPYDLSRFASSHLKPLQIHVCN----DYSAFDQSQHGEAVVLERKKMERLSIP 193
+ +Y G L+ S L PL ++ + D+S FD+SQ + E +
Sbjct: 209 IVLYSGMNTDVLAELIESKL-PLGLNAYHTLEIDFSKFDKSQGTCFKLYEEMMYKMFGFS 267
Query: 194 SHLID-------LHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDI-TT 349
L D C K L R TG P T+ NT + ++ S YDI
Sbjct: 268 PELYDRDFKYTEYFCRAKATCGVDL-ELGTQRRTGSPNTWLSNTLVTLGMMLSSYDIDDI 326
Query: 350 QTVFVSGDDSLV 385
+ VSGDDSL+
Sbjct: 327 DLLLVSGDDSLI 338
>UniRef50_Q8BEP8 Cluster: RNA-dependent RNA polymerase; n=75;
Closterovirus|Rep: RNA-dependent RNA polymerase -
Grapevine rootstock stem lesion associated virus
Length = 459
Score = 35.1 bits (77), Expect = 1.7
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 9/131 (6%)
Frame = +2
Query: 20 PNLFVYGGQTPYDLSRFASSHLKPLQI-HVCN-DYSAFDQSQHGEAVVLERKKMERLSIP 193
PN+ + T D + S+ L + H+ D+S +D+SQ E + L +
Sbjct: 160 PNIKFFTEMTNRDFASVVSNMLGDDDVYHIGEVDFSKYDKSQDAFVKSFEEVMYKELGVD 219
Query: 194 SHLIDLH-CYIKTNITSQF-GPLTC----MRLTGEPGTYDDNTDYNIAVIYSEYDITT-Q 352
L+ + C + +I + G L+ R +G T+ N+ + ++ YD+ +
Sbjct: 220 EELLAIWMCGERLSIANTLDGQLSFTIENQRKSGASNTWIGNSLVTLGILSLYYDVRHFE 279
Query: 353 TVFVSGDDSLV 385
++VSGDDSL+
Sbjct: 280 ALYVSGDDSLI 290
>UniRef50_Q86783 Cluster: RNA-directed RNA polymerase 2A; n=94;
Cucumovirus|Rep: RNA-directed RNA polymerase 2A -
Cucumber mosaic virus (strain K) (CMV)
Length = 858
Score = 35.1 bits (77), Expect = 1.7
Identities = 31/104 (29%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
Frame = +2
Query: 113 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHC------YIKTNITSQFGPLTCMRLT 274
D S FD+SQ ++++ + L P+ + C YI+ P++ R T
Sbjct: 517 DLSKFDKSQGEFHLMIQEHILNGLGCPAPITKWWCDFHRFSYIRDRRAGVGMPISFQRRT 576
Query: 275 GEPGTYDDNTDYNIAVIYSEYDITT-QTVFVSGDDSL---VSPP 394
G+ TY NT +A YD + + SGDDSL V PP
Sbjct: 577 GDAFTYFGNTIVTMAEFAWCYDTDQFEKLLFSGDDSLGFSVLPP 620
>UniRef50_Q66107 Cluster: Polymerase; n=11; Ilarvirus subgroup
2|Rep: Polymerase - Citrus leaf rugose virus
Length = 832
Score = 34.7 bits (76), Expect = 2.3
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Frame = +2
Query: 113 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDL------HCYIKTNITSQFGPLTCMRLT 274
D+S FD+SQ +++ + L +P +++ YI T + R T
Sbjct: 440 DFSKFDKSQGELHHKVQKMIFDLLKLPPEFVEMWFTSHERSYITDRDTGVGFAVDFQRRT 499
Query: 275 GEPGTYDDNTDYNIAVIYSEYDITTQTV-FV--SGDDSLV 385
G+ TY NT + + YD+ + FV SGDDSL+
Sbjct: 500 GDANTYLGNTLVTLICLARVYDLCDPKITFVIASGDDSLI 539
>UniRef50_A7NVU4 Cluster: Chromosome chr18 scaffold_1, whole genome
shotgun sequence; n=9; Vitis vinifera|Rep: Chromosome
chr18 scaffold_1, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 512
Score = 34.7 bits (76), Expect = 2.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +2
Query: 188 IPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSE 334
IPS +D+ +I+ + ++GPL C L G P + D+N + E
Sbjct: 87 IPSKSLDVSSFIRKRM-KKYGPLFCTNLVGRPVVVSSDPDFNYYIFQQE 134
>UniRef50_Q997A3 Cluster: Putative polymerase p2; n=1; American plum
line pattern virus|Rep: Putative polymerase p2 -
American plum line pattern virus
Length = 740
Score = 34.3 bits (75), Expect = 3.0
Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 12/103 (11%)
Frame = +2
Query: 113 DYSAFDQSQHGEAVVLERKKMERL-SIPSHLIDLHCYIKTNITSQF-------GPLT-CM 265
DYS FD+SQ ++RK RL S P + + + ++ S+ G T
Sbjct: 476 DYSKFDKSQGRLHHEIQRKLFRRLHSNPDYDNFIETWFSAHMRSKIYDRDAGVGFSTDYQ 535
Query: 266 RLTGEPGTYDDNTDYNIAVIYSEYDITTQT---VFVSGDDSLV 385
R TG+ TY NT + + YD+T+ V SGDDSL+
Sbjct: 536 RRTGDACTYLGNTLVTLCTLSYIYDLTSPNVGLVVASGDDSLI 578
>UniRef50_A4RF10 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 548
Score = 33.9 bits (74), Expect = 3.9
Identities = 17/52 (32%), Positives = 29/52 (55%)
Frame = +2
Query: 311 NIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVR 466
N+ + ++T+T+ D+S V P A P WDA+S L S +++FV+
Sbjct: 241 NVTLGLEPASLSTETLVAQADNSFVFVAPQAAPTWDAISELES---EEDFVK 289
>UniRef50_Q61PF6 Cluster: Putative uncharacterized protein CBG07562;
n=1; Caenorhabditis briggsae|Rep: Putative
uncharacterized protein CBG07562 - Caenorhabditis
briggsae
Length = 3008
Score = 33.5 bits (73), Expect = 5.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +2
Query: 311 NIAVIYSEYDITTQTVFVSGDDSLVSPPPPAHPDW 415
NI+++ +YD +T+F G + V PPPP DW
Sbjct: 1931 NISIV-QDYDEALRTIF-GGTEQAVPPPPPVEVDW 1963
>UniRef50_A7SNG1 Cluster: Predicted protein; n=1; Nematostella
vectensis|Rep: Predicted protein - Nematostella vectensis
Length = 3976
Score = 33.5 bits (73), Expect = 5.2
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 229 GFDVAMEVYKMRWNGKPLHFLPFQDNGLTMLRLV 128
G + AME K+ WN F+P++D G+++L V
Sbjct: 950 GLEKAMEKMKVEWNDMFFEFVPYRDTGVSILSAV 983
>UniRef50_Q9DQ91 Cluster: RNA-dependent RNA polymerase; n=1;
Pineapple mealybug wilt-associated virus 2|Rep:
RNA-dependent RNA polymerase - Pineapple mealybug
wilt-associated virus 2
Length = 559
Score = 33.1 bits (72), Expect = 6.9
Identities = 33/165 (20%), Positives = 66/165 (40%), Gaps = 9/165 (5%)
Frame = +2
Query: 26 LFVYGGQTPYDLSRFASSHLKPLQIHVCN--DYSAFDQSQHGEAVVLERKKMERLSIPSH 199
+ +Y G P +L++ + + + + C D S +D+SQ +E++ + L +
Sbjct: 257 VILYHGMDPSNLAKRIRADIGDINKYYCYELDISKYDKSQGALMKDVEQRVLRLLGLHEE 316
Query: 200 LIDLH------CYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAVIYSEYDIT-TQTV 358
+ID+ C + + R +G T+ NT + ++ + + +
Sbjct: 317 IIDMFFCGEYDCLVSMTTREFETSIGAQRRSGGANTWLGNTIVVMTLLSILLEESHVDYI 376
Query: 359 FVSGDDSLVSPPPPAHPDWDAVSPLLSLTFKKEFVRNGLFCGYYL 493
VSGDDSL+ P D ++ K + FC +L
Sbjct: 377 VVSGDDSLIFSTEPLDLDTHTLTQNYGFDCKLLNMTAPYFCSKFL 421
>UniRef50_Q9LFY6 Cluster: T7N9.5; n=2; Arabidopsis thaliana|Rep:
T7N9.5 - Arabidopsis thaliana (Mouse-ear cress)
Length = 1436
Score = 33.1 bits (72), Expect = 6.9
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +2
Query: 128 DQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGP 253
D+S V E K + +PSHL D HCY T T++ P
Sbjct: 883 DESSSMIFVPSEPKSTRQRKLPSHLQDFHCYNNTPTTTKTSP 924
>UniRef50_A7TSR0 Cluster: Putative uncharacterized protein; n=1;
Vanderwaltozyma polyspora DSM 70294|Rep: Putative
uncharacterized protein - Vanderwaltozyma polyspora DSM
70294
Length = 548
Score = 33.1 bits (72), Expect = 6.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 203 IDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDN 301
+DLHC+IK + FGP+ + L G YD+N
Sbjct: 279 VDLHCFIKKFVN--FGPIESVYLINSNGIYDNN 309
>UniRef50_A4QTP3 Cluster: Putative uncharacterized protein; n=4;
Sordariomycetes|Rep: Putative uncharacterized protein -
Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 824
Score = 33.1 bits (72), Expect = 6.9
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = +2
Query: 371 DDSLVSPPPPAHPDWDAVSPLLSLTFK 451
D S++ PPPPA P +++P+++ TF+
Sbjct: 514 DASMMPPPPPAQPKGPSLNPIITTTFR 540
>UniRef50_Q8Q064 Cluster: Putative uncharacterized protein; n=1;
Methanosarcina mazei|Rep: Putative uncharacterized
protein - Methanosarcina mazei (Methanosarcina frisia)
Length = 1009
Score = 33.1 bits (72), Expect = 6.9
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 284 GTYDDNTDYNIAV-IYSEYDITTQTVFVSGDDSLVSP 391
G Y NT+ V YS YD+ ++TV++ G+D+ + P
Sbjct: 133 GNYSINTESKSYVPSYSSYDVFSKTVYIEGEDNFLPP 169
>UniRef50_Q91NQ0 Cluster: Polymerase p2; n=5; Ilarvirus|Rep:
Polymerase p2 - Prunus necrotic ringspot virus
Length = 799
Score = 32.7 bits (71), Expect = 9.1
Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 9/105 (8%)
Frame = +2
Query: 113 DYSAFDQSQHGEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGP------LTCMRLT 274
D+S FD+SQ +++ L P +D+ + GP + R T
Sbjct: 523 DFSKFDKSQQRLHHLIQFHIFTALGAPKDFLDMWFASHEISHIRDGPCGIGFSVNYQRRT 582
Query: 275 GEPGTYDDNTDYNIAVIYSEYDITTQTV-FV--SGDDSLVSPPPP 400
G+ TY NT ++ + YD+ V FV SGDDSL+ P
Sbjct: 583 GDACTYLGNTIITLSALAYMYDLLDPNVTFVIASGDDSLIGSIKP 627
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,545,592
Number of Sequences: 1657284
Number of extensions: 14796112
Number of successful extensions: 47091
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 44877
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46986
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56611575523
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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