Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e14
         (709 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1024 - 25449163-25449824,25451882-25452191                       29   2.7  
06_01_0087 + 695443-695655,696669-696983                               29   2.7  
09_06_0142 - 21107878-21109104                                         29   3.6  
12_02_1252 - 27346314-27347327                                         29   4.8  
11_03_0066 + 9529969-9530166,9530271-9530450,9530559-9531287,953...    29   4.8  
01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574           28   8.4  

>12_02_1024 - 25449163-25449824,25451882-25452191
          Length = 323

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = +2

Query: 284 GTYDDNTDYNIA---VIYSEYDITTQTVF--VSGDDSLVSPPPPAHP 409
           GT+D   D  +A   V    Y +  +T F   +G+D L  PPPPA P
Sbjct: 186 GTFDTALDAALAYDAVSRRLYGLNAKTNFPAAAGEDDLPPPPPPAKP 232


>06_01_0087 + 695443-695655,696669-696983
          Length = 175

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
 Frame = +2

Query: 371 DDSLVSPPPPAH---PDWDAVSPL 433
           DD L  PPPPA     DW+A +PL
Sbjct: 26  DDELPPPPPPASGSGEDWEATTPL 49


>09_06_0142 - 21107878-21109104
          Length = 408

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 221 IKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIA 319
           I   +   FG L C+ + GEPG Y   T + +A
Sbjct: 259 INRALERHFGDLPCVEVIGEPGRYFAETAFTLA 291


>12_02_1252 - 27346314-27347327
          Length = 337

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -3

Query: 209 GL*DEMEWKAAPFSSVPRQRPHHAEIGQTQSSHCRHEFVMVSDGTK 72
           GL DEM W   P+S+       HA +     +H  + +    DG K
Sbjct: 261 GLADEMTWPQPPYSAFREDSFGHAVLDIKNRTHAYYAWYRNDDGAK 306


>11_03_0066 +
           9529969-9530166,9530271-9530450,9530559-9531287,
           9531554-9531706,9531803-9532238,9532322-9532501,
           9532643-9532889,9533090-9533123,9533385-9533489,
           9533833-9533967,9534220-9534399,9534504-9534626
          Length = 899

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = -1

Query: 223 DVAMEVYKMRWNGK 182
           D+AMEVYK+ WNG+
Sbjct: 689 DIAMEVYKIVWNGQ 702


>01_01_0187 + 1624159-1624279,1624530-1624590,1625118-1625574
          Length = 212

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 25/88 (28%), Positives = 34/88 (38%)
 Frame = +2

Query: 143 GEAVVLERKKMERLSIPSHLIDLHCYIKTNITSQFGPLTCMRLTGEPGTYDDNTDYNIAV 322
           G+  +  R    RLS P      H Y+ T       P + +     P TY     +    
Sbjct: 91  GDPCIPLRPVQPRLS-PPQPPPYHHYLYTTTA----PPSALHPMSYPATYPAPPRHQQPA 145

Query: 323 IYSEYDITTQTVFVSGDDSLVSPPPPAH 406
              +Y I      VS  D+LV+PPPP H
Sbjct: 146 AVGDYVIGHA---VSAGDALVAPPPPPH 170


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,976,950
Number of Sequences: 37544
Number of extensions: 437741
Number of successful extensions: 1520
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)