Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e11
         (662 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0208 - 17941468-17941507,17942073-17942148,17943442-179435...    29   2.5  
09_06_0230 + 21717225-21717301,21717888-21717972,21718045-217181...    28   7.6  

>06_03_0208 -
           17941468-17941507,17942073-17942148,17943442-17943514,
           17944023-17944106,17945335-17945481,17945839-17945863,
           17945966-17946420
          Length = 299

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -1

Query: 416 FLFQLQ-TFCSFLFSMTATSF 357
           F FQ+Q  FC F+ S+TATSF
Sbjct: 67  FQFQIQLAFCEFVMSLTATSF 87


>09_06_0230 + 21717225-21717301,21717888-21717972,21718045-21718165,
            21718244-21718368,21718940-21718984,21719082-21719345,
            21720067-21720111,21720182-21720212,21721644-21721693,
            21722433-21724310,21724406-21724564,21724821-21724939,
            21726917-21727059,21727670-21727735,21728184-21728317,
            21728454-21728591,21728927-21729186,21729295-21729406,
            21730727-21730909
          Length = 1344

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 89   LFSGRPSRTKHNKNDYYRRHDP 154
            L+SG+  +TK NKN Y   H+P
Sbjct: 1156 LYSGKSQKTKQNKNIYDFLHNP 1177


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,535,994
Number of Sequences: 37544
Number of extensions: 279393
Number of successful extensions: 510
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)