Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc28e07
         (620 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6LEZ3 Cluster: Plasmodium falciparum chromosome 6, com...    37   0.45 
UniRef50_Q0GF67 Cluster: E3; n=5; Turkey adenovirus A|Rep: E3 - ...    33   7.3  
UniRef50_Q8I437 Cluster: Putative uncharacterized protein PFE032...    33   7.3  
UniRef50_A3LPV3 Cluster: Fungal transcriptional regulatory prote...    33   7.3  

>UniRef50_Q6LEZ3 Cluster: Plasmodium falciparum chromosome 6, complete
            sequence; segment 4/5; n=18; root|Rep: Plasmodium
            falciparum chromosome 6, complete sequence; segment 4/5 -
            Plasmodium falciparum (isolate 3D7)
          Length = 10287

 Score = 36.7 bits (81), Expect = 0.45
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -3

Query: 261  IFTNKNGNIKGTKQNYNGENIYYIQQYYTRDKRNK 157
            I+TN NG  K  K+ Y  EN++ IQ+Y  R + NK
Sbjct: 1266 IYTNNNGEEKRKKRKYYEENMHEIQRYEKRKRNNK 1300


>UniRef50_Q0GF67 Cluster: E3; n=5; Turkey adenovirus A|Rep: E3 -
           Turkey adenovirus 3
          Length = 300

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = +3

Query: 48  DALTKSE*FVRILISIPVL-NCFSGN*DCPMIGNVFILCFFYHGY 179
           +ALTK E F+  L++ P+  NCF GN DC      F +C  Y  Y
Sbjct: 204 NALTKEE-FMHQLVNFPLCSNCFKGNSDCSC---AFYICKLYSFY 244


>UniRef50_Q8I437 Cluster: Putative uncharacterized protein PFE0320w;
           n=1; Plasmodium falciparum 3D7|Rep: Putative
           uncharacterized protein PFE0320w - Plasmodium falciparum
           (isolate 3D7)
          Length = 990

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 6/59 (10%)
 Frame = -3

Query: 255 TNKNGNIKGTKQNYNGENIYYIQQY------YTRDKRNKV*KHCQSWDSLNCLKNNLKQ 97
           TNK  N+   K NY  E IY + +       +  +K N V  +       N LKNN K+
Sbjct: 189 TNKYNNVDNNKNNYYAETIYIVDEQEKEADCFPNNKSNIVLSYSNQKKEENVLKNNYKK 247


>UniRef50_A3LPV3 Cluster: Fungal transcriptional regulatory protein;
           n=1; Pichia stipitis|Rep: Fungal transcriptional
           regulatory protein - Pichia stipitis (Yeast)
          Length = 876

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = -1

Query: 266 H*FLQIKMVI*KELNKIIMEKTF-IIFNNIIPVIKETKYKNIANHGTVL 123
           H +L  + +   EL+   ++K F II+ +I+P + E  Y N+AN G  L
Sbjct: 621 HLYLHYEKLYNNELSYFYLKKMFAIIYEDILPYLFELLYGNLANSGLTL 669


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 471,851,741
Number of Sequences: 1657284
Number of extensions: 8382762
Number of successful extensions: 17316
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17285
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45221970467
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)